RNA–Protein interactions for RNA: ENST00000565990.2

SF3B3-206, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-206ENST00000565990 LTKP29376 864 aa18.3■□□□□ 0.52
SF3B3-206ENST00000565990 NEUROD1Q13562 356 aa18.3■□□□□ 0.52
SF3B3-206ENST00000565990 ANKLE2Q86XL3 938 aa18.3■□□□□ 0.52
SF3B3-206ENST00000565990 STAC3Q96MF2 364 aa18.3■□□□□ 0.52
SF3B3-206ENST00000565990 PPLO60437 1756 aa18.3■□□□□ 0.52
SF3B3-206ENST00000565990 ZNF326Q5BKZ1 582 aaKnown RBP18.29■□□□□ 0.52
SF3B3-206ENST00000565990 TXNDC2Q86VQ3 553 aa18.29■□□□□ 0.52
SF3B3-206ENST00000565990 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.29■□□□□ 0.52
SF3B3-206ENST00000565990 IFT172Q9UG01 1749 aa18.29■□□□□ 0.52
SF3B3-206ENST00000565990 NEXMIFQ5QGS0 1516 aa18.28■□□□□ 0.52
SF3B3-206ENST00000565990 RIMS2Q9UQ26 1411 aa18.28■□□□□ 0.52
SF3B3-206ENST00000565990 VGFO15240 615 aaPredicted RBP18.27■□□□□ 0.52
SF3B3-206ENST00000565990 TIMELESSQ9UNS1 1208 aa18.27■□□□□ 0.52
SF3B3-206ENST00000565990 EID1Q9Y6B2 187 aa18.27■□□□□ 0.52
SF3B3-206ENST00000565990 MED14O60244 1454 aa18.26■□□□□ 0.51
SF3B3-206ENST00000565990 L3MBTL2Q969R5 705 aa18.25■□□□□ 0.51
SF3B3-206ENST00000565990 POLR1AO95602 1720 aaPredicted RBP18.25■□□□□ 0.51
SF3B3-206ENST00000565990 NCKAP5LQ9HCH0 1330 aa18.24■□□□□ 0.51
SF3B3-206ENST00000565990 SCAF11Q99590 1463 aaKnown RBP18.24■□□□□ 0.51
SF3B3-206ENST00000565990 DCAF11Q8TEB1 546 aa18.23■□□□□ 0.51
SF3B3-206ENST00000565990 NUTM2DQ5VT03 806 aaPredicted RBP18.21■□□□□ 0.51
SF3B3-206ENST00000565990 ADGRF5Q8IZF2 1346 aa18.21■□□□□ 0.51
SF3B3-206ENST00000565990 MYOM2P54296 1465 aa18.2■□□□□ 0.5
SF3B3-206ENST00000565990 NRXN1Q9ULB1 1477 aa18.2■□□□□ 0.5
SF3B3-206ENST00000565990 PLEKHG1Q9ULL1 1385 aa18.2■□□□□ 0.5
SF3B3-206ENST00000565990 DMRT2Q9Y5R5 561 aa18.19■□□□□ 0.5
SF3B3-206ENST00000565990 NPHP4O75161 1426 aaPredicted RBP18.18■□□□□ 0.5
SF3B3-206ENST00000565990 KDM2AQ9Y2K7 1162 aa18.18■□□□□ 0.5
SF3B3-206ENST00000565990 TONSLQ96HA7 1378 aa18.17■□□□□ 0.5
SF3B3-206ENST00000565990 PPP1R15AO75807 674 aaPredicted RBP18.17■□□□□ 0.5
SF3B3-206ENST00000565990 TBX22Q9Y458 520 aa18.17■□□□□ 0.5
SF3B3-206ENST00000565990 IQGAP1P46940 1657 aa18.17■□□□□ 0.5
SF3B3-206ENST00000565990 SETBP1Q9Y6X0 1596 aa18.17■□□□□ 0.5
SF3B3-206ENST00000565990 NRXN3Q9Y4C0 1643 aa18.16■□□□□ 0.5
SF3B3-206ENST00000565990 C14orf93Q9H972 538 aaKnown RBP18.15■□□□□ 0.5
SF3B3-206ENST00000565990 PIK3C2GO75747 1445 aa18.15■□□□□ 0.5
SF3B3-206ENST00000565990 ADAMTS13Q76LX8 1427 aa18.15■□□□□ 0.5
SF3B3-206ENST00000565990 PRAG1Q86YV5 1406 aa18.12■□□□□ 0.49
SF3B3-206ENST00000565990 ALKQ9UM73 1620 aa18.12■□□□□ 0.49
SF3B3-206ENST00000565990 SETD1AO15047 1707 aaKnown RBP18.12■□□□□ 0.49
SF3B3-206ENST00000565990 SLC26A8Q96RN1 970 aa18.11■□□□□ 0.49
SF3B3-206ENST00000565990 KIAA1210Q9ULL0 1709 aa18.1■□□□□ 0.49
SF3B3-206ENST00000565990 NBPF8Q3BBV2 869 aa18.1■□□□□ 0.49
SF3B3-206ENST00000565990 DIP2AQ14689 1571 aa18.09■□□□□ 0.49
SF3B3-206ENST00000565990 CFAP70Q5T0N1 1121 aa18.09■□□□□ 0.49
SF3B3-206ENST00000565990 BCANQ96GW7 911 aa18.09■□□□□ 0.49
SF3B3-206ENST00000565990 PIK3R4Q99570 1358 aa18.08■□□□□ 0.49
SF3B3-206ENST00000565990 CHD2O14647 1828 aaKnown RBP18.08■□□□□ 0.48
SF3B3-206ENST00000565990 METP08581 1390 aa18.07■□□□□ 0.48
SF3B3-206ENST00000565990 LAMC1P11047 1609 aa18.07■□□□□ 0.48
SF3B3-206ENST00000565990 SENP3Q9H4L4 574 aaPredicted RBP18.06■□□□□ 0.48
SF3B3-206ENST00000565990 KCNA6P17658 529 aa18.04■□□□□ 0.48
SF3B3-206ENST00000565990 TRPM1Q7Z4N2 1603 aa18.04■□□□□ 0.48
SF3B3-206ENST00000565990 NBPF1Q3BBV0 1214 aa18.03■□□□□ 0.48
SF3B3-206ENST00000565990 ADGRB1O14514 1584 aa18.03■□□□□ 0.48
SF3B3-206ENST00000565990 TMEM132EQ6IEE7 984 aa18.02■□□□□ 0.48
SF3B3-206ENST00000565990 STRCP1A6NGW2 1772 aa18.02■□□□□ 0.47
SF3B3-206ENST00000565990 PTPRUQ92729 1446 aa18.01■□□□□ 0.47
SF3B3-206ENST00000565990 AMOTL2Q9Y2J4 779 aa18.01■□□□□ 0.47
SF3B3-206ENST00000565990 ASXL1Q8IXJ9 1541 aa18■□□□□ 0.47
SF3B3-206ENST00000565990 SIRT1Q96EB6 747 aa18■□□□□ 0.47
SF3B3-206ENST00000565990 ABCC11Q96J66 1382 aa18■□□□□ 0.47
SF3B3-206ENST00000565990 GPRASP1Q5JY77 1395 aa17.99■□□□□ 0.47
SF3B3-206ENST00000565990 LRPPRCP42704 1394 aaKnown RBP17.98■□□□□ 0.47
SF3B3-206ENST00000565990 NWD1Q149M9 1564 aa17.98■□□□□ 0.47
SF3B3-206ENST00000565990 YTHDC2Q9H6S0 1430 aaKnown RBP17.98■□□□□ 0.47
SF3B3-206ENST00000565990 ZNF335Q9H4Z2 1342 aaPredicted RBP17.98■□□□□ 0.47
SF3B3-206ENST00000565990 RALGAPBQ86X10 1494 aa17.97■□□□□ 0.47
SF3B3-206ENST00000565990 XRN1Q8IZH2 1706 aaKnown RBP17.97■□□□□ 0.47
SF3B3-206ENST00000565990 TECPR2O15040 1411 aa17.96■□□□□ 0.47
SF3B3-206ENST00000565990 LTBP4Q8N2S1 1624 aa17.95■□□□□ 0.46
SF3B3-206ENST00000565990 KNDC1Q76NI1 1749 aa17.95■□□□□ 0.46
SF3B3-206ENST00000565990 ROCK2O75116 1388 aaKnown RBP17.93■□□□□ 0.46
SF3B3-206ENST00000565990 DLC1Q96QB1 1528 aa17.93■□□□□ 0.46
SF3B3-206ENST00000565990 STK26Q9P289 416 aa17.92■□□□□ 0.46
SF3B3-206ENST00000565990 NKTRP30414 1462 aaKnown RBP17.92■□□□□ 0.46
SF3B3-206ENST00000565990 CPS1P31327 1500 aa17.92■□□□□ 0.46
SF3B3-206ENST00000565990 CARD11Q9BXL7 1154 aa17.91■□□□□ 0.46
SF3B3-206ENST00000565990 TRAK1Q9UPV9 953 aa17.91■□□□□ 0.46
SF3B3-206ENST00000565990 ROBO2Q9HCK4 1378 aa17.91■□□□□ 0.46
SF3B3-206ENST00000565990 PTCH1Q13635 1447 aa17.9■□□□□ 0.46
SF3B3-206ENST00000565990 FAM135BQ49AJ0 1406 aa17.9■□□□□ 0.46
SF3B3-206ENST00000565990 NCOA3Q9Y6Q9 1424 aa17.9■□□□□ 0.46
SF3B3-206ENST00000565990 PROSER2Q86WR7 435 aaPredicted RBP17.9■□□□□ 0.46
SF3B3-206ENST00000565990 XIRP1Q702N8 1843 aaKnown RBP17.89■□□□□ 0.45
SF3B3-206ENST00000565990 LRRC7Q96NW7 1537 aa17.89■□□□□ 0.45
SF3B3-206ENST00000565990 ARHGEF28Q8N1W1 1705 aaKnown RBP17.88■□□□□ 0.45
SF3B3-206ENST00000565990 WAPLQ7Z5K2 1190 aa17.87■□□□□ 0.45
SF3B3-206ENST00000565990 PRAM1Q96QH2 718 aa17.85■□□□□ 0.45
SF3B3-206ENST00000565990 TMEM94Q12767 1356 aa17.84■□□□□ 0.45
SF3B3-206ENST00000565990 PLEKHH1Q9ULM0 1364 aa17.84■□□□□ 0.45
SF3B3-206ENST00000565990 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.84■□□□□ 0.45
SF3B3-206ENST00000565990 RBM33Q96EV2 1170 aaKnown RBP17.83■□□□□ 0.44
SF3B3-206ENST00000565990 C19orf44Q9H6X5 657 aa17.82■□□□□ 0.44
SF3B3-206ENST00000565990 POGKQ9P215 609 aa17.82■□□□□ 0.44
SF3B3-206ENST00000565990 IQSEC2Q5JU85 1478 aa17.81■□□□□ 0.44
SF3B3-206ENST00000565990 EIF3AQ14152 1382 aaKnown RBP17.8■□□□□ 0.44
SF3B3-206ENST00000565990 CENPJQ9HC77 1338 aaPredicted RBP17.8■□□□□ 0.44
SF3B3-206ENST00000565990 ST20-MTHFSA0A0A6YYL1 179 aa17.8■□□□□ 0.44
SF3B3-206ENST00000565990 CERKQ8TCT0 537 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms