RNA–Protein interactions for RNA: ENST00000564899.1

SF3B3-205, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-205ENST00000564899 ARHGAP23Q9P227 1491 aa16.21■□□□□ 0.19
SF3B3-205ENST00000564899 SETD1AO15047 1707 aaKnown RBP16.19■□□□□ 0.18
SF3B3-205ENST00000564899 SLIT1O75093 1534 aa16.19■□□□□ 0.18
SF3B3-205ENST00000564899 RBM33Q96EV2 1170 aaKnown RBP16.18■□□□□ 0.18
SF3B3-205ENST00000564899 FOXD1Q16676 465 aa16.17■□□□□ 0.18
SF3B3-205ENST00000564899 ZEB1P37275 1124 aaPredicted RBP16.16■□□□□ 0.18
SF3B3-205ENST00000564899 PIK3C2BO00750 1634 aa16.16■□□□□ 0.18
SF3B3-205ENST00000564899 TXNDC2Q86VQ3 553 aa16.15■□□□□ 0.18
SF3B3-205ENST00000564899 ROBO1Q9Y6N7 1651 aa16.14■□□□□ 0.18
SF3B3-205ENST00000564899 LMTK2Q8IWU2 1503 aa16.14■□□□□ 0.18
SF3B3-205ENST00000564899 TMEM94Q12767 1356 aa16.13■□□□□ 0.17
SF3B3-205ENST00000564899 FAM135BQ49AJ0 1406 aa16.13■□□□□ 0.17
SF3B3-205ENST00000564899 TET3O43151 1660 aa16.13■□□□□ 0.17
SF3B3-205ENST00000564899 ANKRD30BQ9BXX2 1392 aa16.13■□□□□ 0.17
SF3B3-205ENST00000564899 EFCAB6Q5THR3 1501 aa16.11■□□□□ 0.17
SF3B3-205ENST00000564899 SIN3AQ96ST3 1273 aa16.11■□□□□ 0.17
SF3B3-205ENST00000564899 TMEM2Q9UHN6 1383 aa16.1■□□□□ 0.17
SF3B3-205ENST00000564899 NEUROD1Q13562 356 aa16.09■□□□□ 0.17
SF3B3-205ENST00000564899 ARHGAP31Q2M1Z3 1444 aa16.09■□□□□ 0.17
SF3B3-205ENST00000564899 SRCAPQ6ZRS2 3230 aa16.09■□□□□ 0.17
SF3B3-205ENST00000564899 SLC26A8Q96RN1 970 aa16.08■□□□□ 0.16
SF3B3-205ENST00000564899 E9PCH4 1651 aa16.08■□□□□ 0.16
SF3B3-205ENST00000564899 RPRD2Q5VT52 1461 aaKnown RBP16.06■□□□□ 0.16
SF3B3-205ENST00000564899 IDI1Q13907 227 aa16.04■□□□□ 0.16
SF3B3-205ENST00000564899 EID1Q9Y6B2 187 aa16.04■□□□□ 0.16
SF3B3-205ENST00000564899 LRP6O75581 1613 aa16.04■□□□□ 0.16
SF3B3-205ENST00000564899 NWD1Q149M9 1564 aa16.04■□□□□ 0.16
SF3B3-205ENST00000564899 CCDC144AA2RUR9 1427 aa16.03■□□□□ 0.16
SF3B3-205ENST00000564899 PHLPP1O60346 1717 aa16.03■□□□□ 0.16
SF3B3-205ENST00000564899 KCNA6P17658 529 aa16.03■□□□□ 0.16
SF3B3-205ENST00000564899 TRPM2O94759 1503 aa16.03■□□□□ 0.16
SF3B3-205ENST00000564899 TONSLQ96HA7 1378 aa16.02■□□□□ 0.16
SF3B3-205ENST00000564899 PROSER2Q86WR7 435 aaPredicted RBP16.02■□□□□ 0.16
SF3B3-205ENST00000564899 TIMELESSQ9UNS1 1208 aa16.01■□□□□ 0.15
SF3B3-205ENST00000564899 SPHKAPQ2M3C7 1700 aa16.01■□□□□ 0.15
SF3B3-205ENST00000564899 COL16A1Q07092 1604 aaPredicted RBP16.01■□□□□ 0.15
SF3B3-205ENST00000564899 KDM5AP29375 1690 aaKnown RBP16■□□□□ 0.15
SF3B3-205ENST00000564899 ADGRB3O60242 1522 aa15.99■□□□□ 0.15
SF3B3-205ENST00000564899 NKTRP30414 1462 aaKnown RBP15.99■□□□□ 0.15
SF3B3-205ENST00000564899 NOS1P29475 1434 aa15.99■□□□□ 0.15
SF3B3-205ENST00000564899 STAG3Q9UJ98 1225 aa15.98■□□□□ 0.15
SF3B3-205ENST00000564899 MYO5BQ9ULV0 1848 aa15.97■□□□□ 0.15
SF3B3-205ENST00000564899 SLAIN2Q9P270 581 aa15.97■□□□□ 0.15
SF3B3-205ENST00000564899 JCADQ9P266 1359 aa15.96■□□□□ 0.15
SF3B3-205ENST00000564899 CLTCL1P53675 1640 aa15.95■□□□□ 0.14
SF3B3-205ENST00000564899 MSH6P52701 1360 aa15.95■□□□□ 0.14
SF3B3-205ENST00000564899 ZFYVE9O95405 1425 aa15.94■□□□□ 0.14
SF3B3-205ENST00000564899 CHD2O14647 1828 aaKnown RBP15.94■□□□□ 0.14
SF3B3-205ENST00000564899 UPF1Q92900 1129 aaKnown RBP eCLIP15.94■□□□□ 0.14
SF3B3-205ENST00000564899 L3MBTL2Q969R5 705 aa15.92■□□□□ 0.14
SF3B3-205ENST00000564899 SPATA31E1Q6ZUB1 1445 aa15.91■□□□□ 0.14
SF3B3-205ENST00000564899 BCANQ96GW7 911 aa15.9■□□□□ 0.14
SF3B3-205ENST00000564899 SLC52A1Q9NWF4 448 aa15.9■□□□□ 0.14
SF3B3-205ENST00000564899 PPP1R15AO75807 674 aaPredicted RBP15.89■□□□□ 0.13
SF3B3-205ENST00000564899 RGL3Q3MIN7 710 aa15.89■□□□□ 0.13
SF3B3-205ENST00000564899 PLEKHG1Q9ULL1 1385 aa15.88■□□□□ 0.13
SF3B3-205ENST00000564899 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.88■□□□□ 0.13
SF3B3-205ENST00000564899 RIMS2Q9UQ26 1411 aa15.88■□□□□ 0.13
SF3B3-205ENST00000564899 TMEM131LA2VDJ0 1609 aa15.88■□□□□ 0.13
SF3B3-205ENST00000564899 NUTM2DQ5VT03 806 aaPredicted RBP15.88■□□□□ 0.13
SF3B3-205ENST00000564899 DIP2AQ14689 1571 aa15.87■□□□□ 0.13
SF3B3-205ENST00000564899 AHDC1Q5TGY3 1603 aaPredicted RBP15.87■□□□□ 0.13
SF3B3-205ENST00000564899 SHPRHQ149N8 1683 aa15.87■□□□□ 0.13
SF3B3-205ENST00000564899 CHGAP10645 457 aaKnown RBP15.87■□□□□ 0.13
SF3B3-205ENST00000564899 ADAMTS13Q76LX8 1427 aa15.86■□□□□ 0.13
SF3B3-205ENST00000564899 MEX3CQ5U5Q3 659 aaKnown RBP15.84■□□□□ 0.13
SF3B3-205ENST00000564899 DCAF11Q8TEB1 546 aa15.84■□□□□ 0.13
SF3B3-205ENST00000564899 SPATA31A6Q5VVP1 1343 aa15.84■□□□□ 0.13
SF3B3-205ENST00000564899 KIF1BO60333 1816 aa15.84■□□□□ 0.13
SF3B3-205ENST00000564899 ZNF326Q5BKZ1 582 aaKnown RBP15.83■□□□□ 0.12
SF3B3-205ENST00000564899 PTPRUQ92729 1446 aa15.83■□□□□ 0.12
SF3B3-205ENST00000564899 NUTM2BA6NNL0 878 aaPredicted RBP15.82■□□□□ 0.12
SF3B3-205ENST00000564899 NUTM2EB1AL46 878 aaPredicted RBP15.82■□□□□ 0.12
SF3B3-205ENST00000564899 NUTM2AQ8IVF1 878 aaPredicted RBP15.82■□□□□ 0.12
SF3B3-205ENST00000564899 KDM2AQ9Y2K7 1162 aa15.82■□□□□ 0.12
SF3B3-205ENST00000564899 ZNF772Q68DY9 489 aaPredicted RBP15.81■□□□□ 0.12
SF3B3-205ENST00000564899 BRINP3Q76B58 766 aa15.81■□□□□ 0.12
SF3B3-205ENST00000564899 C14orf37Q86TY3 774 aa15.81■□□□□ 0.12
SF3B3-205ENST00000564899 TBX22Q9Y458 520 aa15.8■□□□□ 0.12
SF3B3-205ENST00000564899 RGS12O14924 1447 aa15.79■□□□□ 0.12
SF3B3-205ENST00000564899 RPGRIP1LQ68CZ1 1315 aa15.79■□□□□ 0.12
SF3B3-205ENST00000564899 NBPF8Q3BBV2 869 aa15.79■□□□□ 0.12
SF3B3-205ENST00000564899 STAC3Q96MF2 364 aa15.79■□□□□ 0.12
SF3B3-205ENST00000564899 PRAG1Q86YV5 1406 aa15.78■□□□□ 0.12
SF3B3-205ENST00000564899 NCOA3Q9Y6Q9 1424 aa15.78■□□□□ 0.12
SF3B3-205ENST00000564899 EP400Q96L91 3159 aa15.78■□□□□ 0.12
SF3B3-205ENST00000564899 AFF2P51816 1311 aa15.78■□□□□ 0.12
SF3B3-205ENST00000564899 RXRBP28702 533 aa15.78■□□□□ 0.12
SF3B3-205ENST00000564899 DDX17Q92841 729 aaKnown RBP15.78■□□□□ 0.12
SF3B3-205ENST00000564899 ASXL1Q8IXJ9 1541 aa15.78■□□□□ 0.12
SF3B3-205ENST00000564899 MYOM2P54296 1465 aa15.78■□□□□ 0.12
SF3B3-205ENST00000564899 C19orf44Q9H6X5 657 aa15.77■□□□□ 0.12
SF3B3-205ENST00000564899 NRXN3Q9Y4C0 1643 aa15.76■□□□□ 0.11
SF3B3-205ENST00000564899 CADPS2Q86UW7 1296 aa15.76■□□□□ 0.11
SF3B3-205ENST00000564899 CDK12Q9NYV4 1490 aaPredicted RBP15.76■□□□□ 0.11
SF3B3-205ENST00000564899 NEXMIFQ5QGS0 1516 aa15.75■□□□□ 0.11
SF3B3-205ENST00000564899 ATF3P18847 181 aa15.75■□□□□ 0.11
SF3B3-205ENST00000564899 MST1RQ04912 1400 aa15.75■□□□□ 0.11
SF3B3-205ENST00000564899 NHSL1Q5SYE7 1610 aa15.75■□□□□ 0.11
SF3B3-205ENST00000564899 XRN1Q8IZH2 1706 aaKnown RBP15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 384.8 ms