RNA–Protein interactions for RNA: ENST00000562610.5

COMMD4-206, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 850 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-206ENST00000562610 ZFYVE9O95405 1425 aa24.09■■□□□ 1.45
COMMD4-206ENST00000562610 RIMS2Q9UQ26 1411 aa24.09■■□□□ 1.45
COMMD4-206ENST00000562610 PPP1R15AO75807 674 aaPredicted RBP24.05■■□□□ 1.44
COMMD4-206ENST00000562610 RAB3GAP2Q9H2M9 1393 aa24.04■■□□□ 1.44
COMMD4-206ENST00000562610 BCANQ96GW7 911 aa24.01■■□□□ 1.43
COMMD4-206ENST00000562610 SENP3Q9H4L4 574 aaPredicted RBP24.01■■□□□ 1.43
COMMD4-206ENST00000562610 HDGFP51858 240 aaKnown RBP24■■□□□ 1.43
COMMD4-206ENST00000562610 PLEKHG1Q9ULL1 1385 aa24■■□□□ 1.43
COMMD4-206ENST00000562610 FOXD1Q16676 465 aa23.99■■□□□ 1.43
COMMD4-206ENST00000562610 ACIN1Q9UKV3 1341 aaKnown RBP23.99■■□□□ 1.43
COMMD4-206ENST00000562610 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.98■■□□□ 1.43
COMMD4-206ENST00000562610 MPHOSPH9Q99550 1183 aa23.98■■□□□ 1.43
COMMD4-206ENST00000562610 NEXMIFQ5QGS0 1516 aa23.98■■□□□ 1.43
COMMD4-206ENST00000562610 XIRP1Q702N8 1843 aaKnown RBP23.98■■□□□ 1.43
COMMD4-206ENST00000562610 DIP2AQ14689 1571 aa23.97■■□□□ 1.43
COMMD4-206ENST00000562610 ZNF326Q5BKZ1 582 aaKnown RBP23.97■■□□□ 1.43
COMMD4-206ENST00000562610 NUTM2DQ5VT03 806 aaPredicted RBP23.97■■□□□ 1.43
COMMD4-206ENST00000562610 SLC26A8Q96RN1 970 aa23.97■■□□□ 1.43
COMMD4-206ENST00000562610 CHD2O14647 1828 aaKnown RBP23.96■■□□□ 1.43
COMMD4-206ENST00000562610 PPLO60437 1756 aa23.96■■□□□ 1.43
COMMD4-206ENST00000562610 NWD1Q149M9 1564 aa23.95■■□□□ 1.43
COMMD4-206ENST00000562610 NRXN3Q9Y4C0 1643 aa23.94■■□□□ 1.42
COMMD4-206ENST00000562610 LRRC7Q96NW7 1537 aa23.94■■□□□ 1.42
COMMD4-206ENST00000562610 CCDC144AA2RUR9 1427 aa23.93■■□□□ 1.42
COMMD4-206ENST00000562610 SETBP1Q9Y6X0 1596 aa23.9■■□□□ 1.42
COMMD4-206ENST00000562610 IFT172Q9UG01 1749 aa23.9■■□□□ 1.42
COMMD4-206ENST00000562610 NKTRP30414 1462 aaKnown RBP23.88■■□□□ 1.41
COMMD4-206ENST00000562610 ADAMTS13Q76LX8 1427 aa23.88■■□□□ 1.41
COMMD4-206ENST00000562610 UBAP1LF5GYI3 381 aa23.87■■□□□ 1.41
COMMD4-206ENST00000562610 KCNA6P17658 529 aa23.84■■□□□ 1.41
COMMD4-206ENST00000562610 SETD1AO15047 1707 aaKnown RBP23.83■■□□□ 1.41
COMMD4-206ENST00000562610 TBX22Q9Y458 520 aa23.81■■□□□ 1.4
COMMD4-206ENST00000562610 XRN1Q8IZH2 1706 aaKnown RBP23.81■■□□□ 1.4
COMMD4-206ENST00000562610 ALKQ9UM73 1620 aa23.8■■□□□ 1.4
COMMD4-206ENST00000562610 SPATA31E1Q6ZUB1 1445 aa23.79■■□□□ 1.4
COMMD4-206ENST00000562610 HRCP23327 699 aa23.79■■□□□ 1.4
COMMD4-206ENST00000562610 SCAF1Q9H7N4 1312 aaKnown RBP23.79■■□□□ 1.4
COMMD4-206ENST00000562610 TMEM94Q12767 1356 aa23.78■■□□□ 1.4
COMMD4-206ENST00000562610 RPGRIP1LQ68CZ1 1315 aa23.78■■□□□ 1.4
COMMD4-206ENST00000562610 PIK3R4Q99570 1358 aa23.78■■□□□ 1.4
COMMD4-206ENST00000562610 TOM1O60784 492 aa23.77■■□□□ 1.4
COMMD4-206ENST00000562610 PROSER2Q86WR7 435 aaPredicted RBP23.76■■□□□ 1.39
COMMD4-206ENST00000562610 VGFO15240 615 aaPredicted RBP23.75■■□□□ 1.39
COMMD4-206ENST00000562610 PIP4K2BP78356 416 aa23.75■■□□□ 1.39
COMMD4-206ENST00000562610 RGL3Q3MIN7 710 aa23.75■■□□□ 1.39
COMMD4-206ENST00000562610 RBM33Q96EV2 1170 aaKnown RBP23.73■■□□□ 1.39
COMMD4-206ENST00000562610 PTPRUQ92729 1446 aa23.73■■□□□ 1.39
COMMD4-206ENST00000562610 ANKRD30BQ9BXX2 1392 aa23.72■■□□□ 1.39
COMMD4-206ENST00000562610 METP08581 1390 aa23.7■■□□□ 1.38
COMMD4-206ENST00000562610 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.69■■□□□ 1.38
COMMD4-206ENST00000562610 MSH6P52701 1360 aa23.68■■□□□ 1.38
COMMD4-206ENST00000562610 AMOTL2Q9Y2J4 779 aa23.68■■□□□ 1.38
COMMD4-206ENST00000562610 LAMC1P11047 1609 aa23.66■■□□□ 1.38
COMMD4-206ENST00000562610 NALCNQ8IZF0 1738 aa23.66■■□□□ 1.38
COMMD4-206ENST00000562610 ADGRF5Q8IZF2 1346 aa23.65■■□□□ 1.38
COMMD4-206ENST00000562610 ROBO1Q9Y6N7 1651 aa23.65■■□□□ 1.38
COMMD4-206ENST00000562610 MYOM2P54296 1465 aa23.65■■□□□ 1.38
COMMD4-206ENST00000562610 C14orf37Q86TY3 774 aa23.65■■□□□ 1.38
COMMD4-206ENST00000562610 PIK3C2GO75747 1445 aa23.63■■□□□ 1.37
COMMD4-206ENST00000562610 NCOA3Q9Y6Q9 1424 aa23.62■■□□□ 1.37
COMMD4-206ENST00000562610 KNDC1Q76NI1 1749 aa23.62■■□□□ 1.37
COMMD4-206ENST00000562610 ASXL1Q8IXJ9 1541 aa23.6■■□□□ 1.37
COMMD4-206ENST00000562610 TRIM26Q12899 539 aaPredicted RBP23.59■■□□□ 1.37
COMMD4-206ENST00000562610 NRXN1Q9ULB1 1477 aa23.59■■□□□ 1.37
COMMD4-206ENST00000562610 PTCH1Q13635 1447 aa23.59■■□□□ 1.37
COMMD4-206ENST00000562610 HSPA1LP34931 641 aa23.57■■□□□ 1.36
COMMD4-206ENST00000562610 PRAG1Q86YV5 1406 aa23.55■■□□□ 1.36
COMMD4-206ENST00000562610 ADGRL3Q9HAR2 1447 aa23.54■■□□□ 1.36
COMMD4-206ENST00000562610 DCCP43146 1447 aa23.53■■□□□ 1.36
COMMD4-206ENST00000562610 PHLPP1O60346 1717 aa23.53■■□□□ 1.36
COMMD4-206ENST00000562610 ROBO2Q9HCK4 1378 aa23.52■■□□□ 1.36
COMMD4-206ENST00000562610 FAM135BQ49AJ0 1406 aa23.52■■□□□ 1.36
COMMD4-206ENST00000562610 C19orf44Q9H6X5 657 aa23.52■■□□□ 1.36
COMMD4-206ENST00000562610 ATF3P18847 181 aa23.51■■□□□ 1.35
COMMD4-206ENST00000562610 CADPS2Q86UW7 1296 aa23.5■■□□□ 1.35
COMMD4-206ENST00000562610 DCAF11Q8TEB1 546 aa23.5■■□□□ 1.35
COMMD4-206ENST00000562610 SLAIN2Q9P270 581 aa23.49■■□□□ 1.35
COMMD4-206ENST00000562610 KDM2AQ9Y2K7 1162 aa23.49■■□□□ 1.35
COMMD4-206ENST00000562610 TMEM132EQ6IEE7 984 aa23.48■■□□□ 1.35
COMMD4-206ENST00000562610 STK26Q9P289 416 aa23.48■■□□□ 1.35
COMMD4-206ENST00000562610 LRPPRCP42704 1394 aaKnown RBP23.48■■□□□ 1.35
COMMD4-206ENST00000562610 TECPR2O15040 1411 aa23.48■■□□□ 1.35
COMMD4-206ENST00000562610 YTHDC2Q9H6S0 1430 aaKnown RBP23.48■■□□□ 1.35
COMMD4-206ENST00000562610 CFAP70Q5T0N1 1121 aa23.46■■□□□ 1.35
COMMD4-206ENST00000562610 DHX57Q6P158 1386 aaKnown RBP23.46■■□□□ 1.35
COMMD4-206ENST00000562610 C14orf93Q9H972 538 aaKnown RBP23.45■■□□□ 1.34
COMMD4-206ENST00000562610 CDC42BPGQ6DT37 1551 aa23.44■■□□□ 1.34
COMMD4-206ENST00000562610 KIAA1210Q9ULL0 1709 aa23.44■■□□□ 1.34
COMMD4-206ENST00000562610 ADGRB1O14514 1584 aa23.44■■□□□ 1.34
COMMD4-206ENST00000562610 MST1RQ04912 1400 aa23.43■■□□□ 1.34
COMMD4-206ENST00000562610 MED1Q15648 1581 aaPredicted RBP23.42■■□□□ 1.34
COMMD4-206ENST00000562610 ABCC11Q96J66 1382 aa23.41■■□□□ 1.34
COMMD4-206ENST00000562610 COL16A1Q07092 1604 aaPredicted RBP23.41■■□□□ 1.34
COMMD4-206ENST00000562610 NHSL1Q5SYE7 1610 aa23.41■■□□□ 1.34
COMMD4-206ENST00000562610 AHDC1Q5TGY3 1603 aaPredicted RBP23.41■■□□□ 1.34
COMMD4-206ENST00000562610 STAC3Q96MF2 364 aa23.4■■□□□ 1.34
COMMD4-206ENST00000562610 ARHGEF28Q8N1W1 1705 aaKnown RBP23.39■■□□□ 1.34
COMMD4-206ENST00000562610 FMN2Q9NZ56 1722 aa23.39■■□□□ 1.33
COMMD4-206ENST00000562610 DLC1Q96QB1 1528 aa23.38■■□□□ 1.33
COMMD4-206ENST00000562610 PLEKHH1Q9ULM0 1364 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms