RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 NUTM2DQ5VT03 806 aaPredicted RBP29.76■■■□□ 2.35
CLN3-209ENST00000561689 IFT172Q9UG01 1749 aa29.76■■■□□ 2.35
CLN3-209ENST00000561689 CFAP70Q5T0N1 1121 aa29.75■■■□□ 2.35
CLN3-209ENST00000561689 CCDC7Q96M83 1385 aa29.74■■■□□ 2.35
CLN3-209ENST00000561689 STAG3Q9UJ98 1225 aa29.73■■■□□ 2.35
CLN3-209ENST00000561689 NRXN1Q9ULB1 1477 aa29.73■■■□□ 2.35
CLN3-209ENST00000561689 KIF7Q2M1P5 1343 aa29.72■■■□□ 2.35
CLN3-209ENST00000561689 TMEM131LA2VDJ0 1609 aa29.71■■■□□ 2.35
CLN3-209ENST00000561689 LAMC1P11047 1609 aa29.71■■■□□ 2.35
CLN3-209ENST00000561689 PPLO60437 1756 aa29.7■■■□□ 2.35
CLN3-209ENST00000561689 NEXMIFQ5QGS0 1516 aa29.69■■■□□ 2.34
CLN3-209ENST00000561689 VGFO15240 615 aaPredicted RBP29.69■■■□□ 2.34
CLN3-209ENST00000561689 CEBPAP49715 358 aaPredicted RBP29.69■■■□□ 2.34
CLN3-209ENST00000561689 PIK3C2GO75747 1445 aa29.67■■■□□ 2.34
CLN3-209ENST00000561689 TNRQ92752 1358 aa29.66■■■□□ 2.34
CLN3-209ENST00000561689 PLPPR3Q6T4P5 718 aa29.64■■■□□ 2.34
CLN3-209ENST00000561689 POLR3GLQ9BT43 218 aa29.64■■■□□ 2.34
CLN3-209ENST00000561689 MYO5BQ9ULV0 1848 aa29.63■■■□□ 2.33
CLN3-209ENST00000561689 KIAA1210Q9ULL0 1709 aa29.63■■■□□ 2.33
CLN3-209ENST00000561689 C14orf93Q9H972 538 aaKnown RBP29.63■■■□□ 2.33
CLN3-209ENST00000561689 A2ML1A8K2U0 1454 aa29.61■■■□□ 2.33
CLN3-209ENST00000561689 SENP3Q9H4L4 574 aaPredicted RBP29.61■■■□□ 2.33
CLN3-209ENST00000561689 SCAF11Q99590 1463 aaKnown RBP29.61■■■□□ 2.33
CLN3-209ENST00000561689 TESK2Q96S53 571 aa29.59■■■□□ 2.33
CLN3-209ENST00000561689 ZFYVE9O95405 1425 aa29.59■■■□□ 2.33
CLN3-209ENST00000561689 FER1L4A9Z1Z3 1794 aa29.58■■■□□ 2.33
CLN3-209ENST00000561689 TMEM132EQ6IEE7 984 aa29.55■■■□□ 2.32
CLN3-209ENST00000561689 IQGAP1P46940 1657 aa29.55■■■□□ 2.32
CLN3-209ENST00000561689 POLR1AO95602 1720 aaPredicted RBP29.54■■■□□ 2.32
CLN3-209ENST00000561689 C3P01024 1663 aa29.53■■■□□ 2.32
CLN3-209ENST00000561689 RIMS2Q9UQ26 1411 aa29.52■■■□□ 2.32
CLN3-209ENST00000561689 EIF3AQ14152 1382 aaKnown RBP29.51■■■□□ 2.31
CLN3-209ENST00000561689 SETBP1Q9Y6X0 1596 aa29.5■■■□□ 2.31
CLN3-209ENST00000561689 ANP32CO43423 234 aa29.5■■■□□ 2.31
CLN3-209ENST00000561689 DISP3Q9P2K9 1392 aa29.49■■■□□ 2.31
CLN3-209ENST00000561689 ADGRB1O14514 1584 aa29.49■■■□□ 2.31
CLN3-209ENST00000561689 TRAK1Q9UPV9 953 aa29.48■■■□□ 2.31
CLN3-209ENST00000561689 TMF1P82094 1093 aa29.48■■■□□ 2.31
CLN3-209ENST00000561689 NLRP1Q9C000 1473 aa29.46■■■□□ 2.31
CLN3-209ENST00000561689 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.43■■■□□ 2.3
CLN3-209ENST00000561689 TMEM2Q9UHN6 1383 aa29.41■■■□□ 2.3
CLN3-209ENST00000561689 RIMS1Q86UR5 1692 aaKnown RBP29.41■■■□□ 2.3
CLN3-209ENST00000561689 UBR1Q8IWV7 1749 aa29.4■■■□□ 2.3
CLN3-209ENST00000561689 HDGFP51858 240 aaKnown RBP29.39■■■□□ 2.3
CLN3-209ENST00000561689 ADAMTSL3P82987 1691 aa29.38■■■□□ 2.29
CLN3-209ENST00000561689 CENPJQ9HC77 1338 aaPredicted RBP29.38■■■□□ 2.29
CLN3-209ENST00000561689 STK26Q9P289 416 aa29.37■■■□□ 2.29
CLN3-209ENST00000561689 ALKQ9UM73 1620 aa29.37■■■□□ 2.29
CLN3-209ENST00000561689 KDM5AP29375 1690 aaKnown RBP29.37■■■□□ 2.29
CLN3-209ENST00000561689 ASXL1Q8IXJ9 1541 aa29.36■■■□□ 2.29
CLN3-209ENST00000561689 LTKP29376 864 aa29.31■■■□□ 2.28
CLN3-209ENST00000561689 CDCA8Q53HL2 280 aa29.31■■■□□ 2.28
CLN3-209ENST00000561689 BCANQ96GW7 911 aa29.31■■■□□ 2.28
CLN3-209ENST00000561689 YTHDC1Q96MU7 727 aaKnown RBP29.31■■■□□ 2.28
CLN3-209ENST00000561689 MYO3AQ8NEV4 1616 aa29.3■■■□□ 2.28
CLN3-209ENST00000561689 PTPRMP28827 1452 aa29.3■■■□□ 2.28
CLN3-209ENST00000561689 SLC24A1O60721 1099 aa29.3■■■□□ 2.28
CLN3-209ENST00000561689 YTHDC2Q9H6S0 1430 aaKnown RBP29.29■■■□□ 2.28
CLN3-209ENST00000561689 TXNDC2Q86VQ3 553 aa29.29■■■□□ 2.28
CLN3-209ENST00000561689 SBNO2Q9Y2G9 1366 aa29.28■■■□□ 2.28
CLN3-209ENST00000561689 THEMISQ8N1K5 641 aaPredicted RBP29.28■■■□□ 2.28
CLN3-209ENST00000561689 CNGB1Q14028 1251 aaPredicted RBP29.26■■■□□ 2.28
CLN3-209ENST00000561689 PRKRIP1Q9H875 184 aaPredicted RBP29.26■■■□□ 2.28
CLN3-209ENST00000561689 CCER2I3L3R5 266 aa29.26■■■□□ 2.27
CLN3-209ENST00000561689 SAFB2Q14151 953 aaKnown RBP eCLIP29.26■■■□□ 2.27
CLN3-209ENST00000561689 EID1Q9Y6B2 187 aa29.26■■■□□ 2.27
CLN3-209ENST00000561689 NRXN3Q9Y4C0 1643 aa29.25■■■□□ 2.27
CLN3-209ENST00000561689 PANK3Q9H999 370 aa29.23■■■□□ 2.27
CLN3-209ENST00000561689 METP08581 1390 aa29.23■■■□□ 2.27
CLN3-209ENST00000561689 ARHGEF28Q8N1W1 1705 aaKnown RBP29.23■■■□□ 2.27
CLN3-209ENST00000561689 PRAM1Q96QH2 718 aa29.22■■■□□ 2.27
CLN3-209ENST00000561689 SLIT1O75093 1534 aa29.22■■■□□ 2.27
CLN3-209ENST00000561689 QRICH2Q9H0J4 1663 aa29.21■■■□□ 2.27
CLN3-209ENST00000561689 ARHGAP23Q9P227 1491 aa29.21■■■□□ 2.27
CLN3-209ENST00000561689 PLEKHG1Q9ULL1 1385 aa29.21■■■□□ 2.27
CLN3-209ENST00000561689 POGKQ9P215 609 aa29.2■■■□□ 2.26
CLN3-209ENST00000561689 CEP170BQ9Y4F5 1589 aaPredicted RBP29.2■■■□□ 2.26
CLN3-209ENST00000561689 SETD1AO15047 1707 aaKnown RBP29.19■■■□□ 2.26
CLN3-209ENST00000561689 LRPPRCP42704 1394 aaKnown RBP29.19■■■□□ 2.26
CLN3-209ENST00000561689 PER1O15534 1290 aaPredicted RBP29.17■■■□□ 2.26
CLN3-209ENST00000561689 ADAMTS13Q76LX8 1427 aa29.17■■■□□ 2.26
CLN3-209ENST00000561689 SLC26A8Q96RN1 970 aa29.15■■■□□ 2.26
CLN3-209ENST00000561689 ABCC11Q96J66 1382 aa29.14■■■□□ 2.26
CLN3-209ENST00000561689 EVC2Q86UK5 1308 aa29.13■■■□□ 2.25
CLN3-209ENST00000561689 MINK1Q8N4C8 1332 aaPredicted RBP29.13■■■□□ 2.25
CLN3-209ENST00000561689 WAPLQ7Z5K2 1190 aa29.13■■■□□ 2.25
CLN3-209ENST00000561689 PLEKHH1Q9ULM0 1364 aa29.09■■■□□ 2.25
CLN3-209ENST00000561689 DLC1Q96QB1 1528 aa29.09■■■□□ 2.25
CLN3-209ENST00000561689 TULP4Q9NRJ4 1543 aa29.09■■■□□ 2.25
CLN3-209ENST00000561689 CCDC184Q52MB2 194 aa29.08■■■□□ 2.25
CLN3-209ENST00000561689 CABP2Q9NPB3 220 aa29.08■■■□□ 2.25
CLN3-209ENST00000561689 MYOM1P52179 1685 aa29.07■■■□□ 2.24
CLN3-209ENST00000561689 MED14O60244 1454 aa29.07■■■□□ 2.24
CLN3-209ENST00000561689 TMC1Q8TDI8 760 aa29.06■■■□□ 2.24
CLN3-209ENST00000561689 SETD1BQ9UPS6 1966 aaKnown RBP29.05■■■□□ 2.24
CLN3-209ENST00000561689 ZNF142P52746 1687 aaPredicted RBP29.05■■■□□ 2.24
CLN3-209ENST00000561689 SRPK2P78362 688 aaKnown RBP29.04■■■□□ 2.24
CLN3-209ENST00000561689 CC2D1BQ5T0F9 858 aaKnown RBP29.04■■■□□ 2.24
CLN3-209ENST00000561689 ANKLE2Q86XL3 938 aa29.04■■■□□ 2.24
CLN3-209ENST00000561689 SLC12A5Q9H2X9 1139 aa29.04■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms