RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.15■□□□□ 0.66
NEDD8-208ENST00000560427 MYO5BQ9ULV0 1848 aa19.15■□□□□ 0.66
NEDD8-208ENST00000560427 LTKP29376 864 aa19.13■□□□□ 0.65
NEDD8-208ENST00000560427 ANKRD30BQ9BXX2 1392 aa19.12■□□□□ 0.65
NEDD8-208ENST00000560427 PLEKHG1Q9ULL1 1385 aa19.11■□□□□ 0.65
NEDD8-208ENST00000560427 NEXMIFQ5QGS0 1516 aa19.1■□□□□ 0.65
NEDD8-208ENST00000560427 SPATA31E1Q6ZUB1 1445 aa19.09■□□□□ 0.65
NEDD8-208ENST00000560427 RPGRIP1LQ68CZ1 1315 aa19.09■□□□□ 0.65
NEDD8-208ENST00000560427 PPP1R15AO75807 674 aaPredicted RBP19.09■□□□□ 0.65
NEDD8-208ENST00000560427 ZNF326Q5BKZ1 582 aaKnown RBP19.08■□□□□ 0.64
NEDD8-208ENST00000560427 DIP2AQ14689 1571 aa19.07■□□□□ 0.64
NEDD8-208ENST00000560427 LTBP4Q8N2S1 1624 aa19.04■□□□□ 0.64
NEDD8-208ENST00000560427 SETBP1Q9Y6X0 1596 aa19.04■□□□□ 0.64
NEDD8-208ENST00000560427 CPS1P31327 1500 aa19.04■□□□□ 0.64
NEDD8-208ENST00000560427 ZNF335Q9H4Z2 1342 aaPredicted RBP19.02■□□□□ 0.64
NEDD8-208ENST00000560427 PPLO60437 1756 aa19.02■□□□□ 0.64
NEDD8-208ENST00000560427 VGFO15240 615 aaPredicted RBP19.02■□□□□ 0.64
NEDD8-208ENST00000560427 DHX57Q6P158 1386 aaKnown RBP19.01■□□□□ 0.63
NEDD8-208ENST00000560427 IQSEC2Q5JU85 1478 aa19.01■□□□□ 0.63
NEDD8-208ENST00000560427 ADAMTS13Q76LX8 1427 aa19■□□□□ 0.63
NEDD8-208ENST00000560427 IFT172Q9UG01 1749 aa19■□□□□ 0.63
NEDD8-208ENST00000560427 PIK3R4Q99570 1358 aa18.99■□□□□ 0.63
NEDD8-208ENST00000560427 BCANQ96GW7 911 aa18.99■□□□□ 0.63
NEDD8-208ENST00000560427 TBX22Q9Y458 520 aa18.99■□□□□ 0.63
NEDD8-208ENST00000560427 NRXN3Q9Y4C0 1643 aa18.99■□□□□ 0.63
NEDD8-208ENST00000560427 NUTM2DQ5VT03 806 aaPredicted RBP18.98■□□□□ 0.63
NEDD8-208ENST00000560427 NWD1Q149M9 1564 aa18.98■□□□□ 0.63
NEDD8-208ENST00000560427 MYOM2P54296 1465 aa18.97■□□□□ 0.63
NEDD8-208ENST00000560427 SLC26A8Q96RN1 970 aa18.96■□□□□ 0.63
NEDD8-208ENST00000560427 PCGF6Q9BYE7 350 aa18.96■□□□□ 0.63
NEDD8-208ENST00000560427 NKTRP30414 1462 aaKnown RBP18.96■□□□□ 0.63
NEDD8-208ENST00000560427 RGL3Q3MIN7 710 aa18.95■□□□□ 0.62
NEDD8-208ENST00000560427 CERKQ8TCT0 537 aa18.95■□□□□ 0.62
NEDD8-208ENST00000560427 STAC3Q96MF2 364 aa18.95■□□□□ 0.62
NEDD8-208ENST00000560427 KCNA6P17658 529 aa18.94■□□□□ 0.62
NEDD8-208ENST00000560427 NRXN1Q9ULB1 1477 aa18.93■□□□□ 0.62
NEDD8-208ENST00000560427 PIK3C2GO75747 1445 aa18.92■□□□□ 0.62
NEDD8-208ENST00000560427 STRCP1A6NGW2 1772 aa18.91■□□□□ 0.62
NEDD8-208ENST00000560427 CHD2O14647 1828 aaKnown RBP18.9■□□□□ 0.62
NEDD8-208ENST00000560427 ADGRF5Q8IZF2 1346 aa18.9■□□□□ 0.62
NEDD8-208ENST00000560427 LRRC7Q96NW7 1537 aa18.9■□□□□ 0.62
NEDD8-208ENST00000560427 ALKQ9UM73 1620 aa18.89■□□□□ 0.62
NEDD8-208ENST00000560427 LAMC1P11047 1609 aa18.89■□□□□ 0.61
NEDD8-208ENST00000560427 SETD1AO15047 1707 aaKnown RBP18.88■□□□□ 0.61
NEDD8-208ENST00000560427 PRAG1Q86YV5 1406 aa18.88■□□□□ 0.61
NEDD8-208ENST00000560427 XRN1Q8IZH2 1706 aaKnown RBP18.87■□□□□ 0.61
NEDD8-208ENST00000560427 METP08581 1390 aa18.86■□□□□ 0.61
NEDD8-208ENST00000560427 NCOA3Q9Y6Q9 1424 aa18.85■□□□□ 0.61
NEDD8-208ENST00000560427 SENP3Q9H4L4 574 aaPredicted RBP18.85■□□□□ 0.61
NEDD8-208ENST00000560427 DCAF11Q8TEB1 546 aa18.84■□□□□ 0.61
NEDD8-208ENST00000560427 PTPRUQ92729 1446 aa18.83■□□□□ 0.61
NEDD8-208ENST00000560427 CLSPNQ9HAW4 1339 aa18.83■□□□□ 0.61
NEDD8-208ENST00000560427 PTCH1Q13635 1447 aa18.83■□□□□ 0.6
NEDD8-208ENST00000560427 AMOTL2Q9Y2J4 779 aa18.82■□□□□ 0.6
NEDD8-208ENST00000560427 TMEM94Q12767 1356 aa18.81■□□□□ 0.6
NEDD8-208ENST00000560427 FBXO41Q8TF61 875 aa18.81■□□□□ 0.6
NEDD8-208ENST00000560427 C14orf93Q9H972 538 aaKnown RBP18.81■□□□□ 0.6
NEDD8-208ENST00000560427 PROSER2Q86WR7 435 aaPredicted RBP18.8■□□□□ 0.6
NEDD8-208ENST00000560427 SIN3AQ96ST3 1273 aa18.8■□□□□ 0.6
NEDD8-208ENST00000560427 ASXL1Q8IXJ9 1541 aa18.79■□□□□ 0.6
NEDD8-208ENST00000560427 TECPR2O15040 1411 aa18.79■□□□□ 0.6
NEDD8-208ENST00000560427 KDM2AQ9Y2K7 1162 aa18.78■□□□□ 0.6
NEDD8-208ENST00000560427 XIRP1Q702N8 1843 aaKnown RBP18.78■□□□□ 0.6
NEDD8-208ENST00000560427 LRPPRCP42704 1394 aaKnown RBP18.78■□□□□ 0.6
NEDD8-208ENST00000560427 KNDC1Q76NI1 1749 aa18.77■□□□□ 0.59
NEDD8-208ENST00000560427 NEUROD1Q13562 356 aa18.76■□□□□ 0.59
NEDD8-208ENST00000560427 KIAA1210Q9ULL0 1709 aa18.76■□□□□ 0.59
NEDD8-208ENST00000560427 ABCC11Q96J66 1382 aa18.76■□□□□ 0.59
NEDD8-208ENST00000560427 ADGRB1O14514 1584 aa18.76■□□□□ 0.59
NEDD8-208ENST00000560427 YTHDC2Q9H6S0 1430 aaKnown RBP18.75■□□□□ 0.59
NEDD8-208ENST00000560427 CFAP70Q5T0N1 1121 aa18.75■□□□□ 0.59
NEDD8-208ENST00000560427 L3MBTL2Q969R5 705 aa18.75■□□□□ 0.59
NEDD8-208ENST00000560427 MSH6P52701 1360 aa18.75■□□□□ 0.59
NEDD8-208ENST00000560427 TONSLQ96HA7 1378 aa18.74■□□□□ 0.59
NEDD8-208ENST00000560427 TOM1O60784 492 aa18.74■□□□□ 0.59
NEDD8-208ENST00000560427 DCCP43146 1447 aa18.74■□□□□ 0.59
NEDD8-208ENST00000560427 ROBO2Q9HCK4 1378 aa18.72■□□□□ 0.59
NEDD8-208ENST00000560427 UBAP1LF5GYI3 381 aa18.72■□□□□ 0.59
NEDD8-208ENST00000560427 DLC1Q96QB1 1528 aa18.71■□□□□ 0.59
NEDD8-208ENST00000560427 SIRT1Q96EB6 747 aa18.71■□□□□ 0.59
NEDD8-208ENST00000560427 FAM135BQ49AJ0 1406 aa18.71■□□□□ 0.59
NEDD8-208ENST00000560427 ADGRL3Q9HAR2 1447 aa18.71■□□□□ 0.59
NEDD8-208ENST00000560427 TMEM132EQ6IEE7 984 aa18.7■□□□□ 0.58
NEDD8-208ENST00000560427 C19orf44Q9H6X5 657 aa18.7■□□□□ 0.58
NEDD8-208ENST00000560427 C14orf37Q86TY3 774 aa18.68■□□□□ 0.58
NEDD8-208ENST00000560427 TIMELESSQ9UNS1 1208 aa18.68■□□□□ 0.58
NEDD8-208ENST00000560427 CADPS2Q86UW7 1296 aa18.67■□□□□ 0.58
NEDD8-208ENST00000560427 CCER1Q8TC90 406 aaPredicted RBP18.67■□□□□ 0.58
NEDD8-208ENST00000560427 RBM33Q96EV2 1170 aaKnown RBP18.67■□□□□ 0.58
NEDD8-208ENST00000560427 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.66■□□□□ 0.58
NEDD8-208ENST00000560427 STK26Q9P289 416 aa18.66■□□□□ 0.58
NEDD8-208ENST00000560427 NALCNQ8IZF0 1738 aa18.66■□□□□ 0.58
NEDD8-208ENST00000560427 TRPM1Q7Z4N2 1603 aa18.65■□□□□ 0.58
NEDD8-208ENST00000560427 CDC42BPGQ6DT37 1551 aa18.64■□□□□ 0.58
NEDD8-208ENST00000560427 ATF3P18847 181 aa18.64■□□□□ 0.57
NEDD8-208ENST00000560427 ILDR1Q86SU0 546 aaPredicted RBP18.64■□□□□ 0.57
NEDD8-208ENST00000560427 RALGAPBQ86X10 1494 aa18.6■□□□□ 0.57
NEDD8-208ENST00000560427 GPRASP1Q5JY77 1395 aa18.6■□□□□ 0.57
NEDD8-208ENST00000560427 ARHGEF28Q8N1W1 1705 aaKnown RBP18.6■□□□□ 0.57
NEDD8-208ENST00000560427 ADGRB2O60241 1585 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms