RNA–Protein interactions for RNA: ENST00000560175.5

SMAD3-213, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-213ENST00000560175 SETD5Q9C0A6 1442 aa19.8■□□□□ 0.76
SMAD3-213ENST00000560175 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.8■□□□□ 0.76
SMAD3-213ENST00000560175 SLC4A1APQ9BWU0 796 aaKnown RBP19.8■□□□□ 0.76
SMAD3-213ENST00000560175 CLTCL1P53675 1640 aa19.79■□□□□ 0.76
SMAD3-213ENST00000560175 LRRC7Q96NW7 1537 aa19.78■□□□□ 0.76
SMAD3-213ENST00000560175 CHGAP10645 457 aaKnown RBP19.76■□□□□ 0.75
SMAD3-213ENST00000560175 MPHOSPH9Q99550 1183 aa19.76■□□□□ 0.75
SMAD3-213ENST00000560175 KIF1BO60333 1816 aa19.75■□□□□ 0.75
SMAD3-213ENST00000560175 KCNA6P17658 529 aa19.75■□□□□ 0.75
SMAD3-213ENST00000560175 SLC26A8Q96RN1 970 aa19.75■□□□□ 0.75
SMAD3-213ENST00000560175 TBX22Q9Y458 520 aa19.75■□□□□ 0.75
SMAD3-213ENST00000560175 HRCP23327 699 aa19.74■□□□□ 0.75
SMAD3-213ENST00000560175 CHD2O14647 1828 aaKnown RBP19.74■□□□□ 0.75
SMAD3-213ENST00000560175 XIRP1Q702N8 1843 aaKnown RBP19.73■□□□□ 0.75
SMAD3-213ENST00000560175 ADAMTS13Q76LX8 1427 aa19.73■□□□□ 0.75
SMAD3-213ENST00000560175 NWD1Q149M9 1564 aa19.72■□□□□ 0.75
SMAD3-213ENST00000560175 ALKQ9UM73 1620 aa19.71■□□□□ 0.75
SMAD3-213ENST00000560175 RAB3GAP2Q9H2M9 1393 aa19.7■□□□□ 0.74
SMAD3-213ENST00000560175 UBAP1LF5GYI3 381 aa19.7■□□□□ 0.74
SMAD3-213ENST00000560175 PPP1R15AO75807 674 aaPredicted RBP19.7■□□□□ 0.74
SMAD3-213ENST00000560175 NEXMIFQ5QGS0 1516 aa19.7■□□□□ 0.74
SMAD3-213ENST00000560175 DIP2AQ14689 1571 aa19.7■□□□□ 0.74
SMAD3-213ENST00000560175 PIK3R4Q99570 1358 aa19.69■□□□□ 0.74
SMAD3-213ENST00000560175 FOXD1Q16676 465 aa19.68■□□□□ 0.74
SMAD3-213ENST00000560175 SETBP1Q9Y6X0 1596 aa19.68■□□□□ 0.74
SMAD3-213ENST00000560175 NRXN3Q9Y4C0 1643 aa19.68■□□□□ 0.74
SMAD3-213ENST00000560175 NKTRP30414 1462 aaKnown RBP19.67■□□□□ 0.74
SMAD3-213ENST00000560175 TOM1O60784 492 aa19.67■□□□□ 0.74
SMAD3-213ENST00000560175 NUTM2DQ5VT03 806 aaPredicted RBP19.67■□□□□ 0.74
SMAD3-213ENST00000560175 RPGRIP1LQ68CZ1 1315 aa19.67■□□□□ 0.74
SMAD3-213ENST00000560175 ZNF326Q5BKZ1 582 aaKnown RBP19.65■□□□□ 0.74
SMAD3-213ENST00000560175 BCANQ96GW7 911 aa19.65■□□□□ 0.74
SMAD3-213ENST00000560175 SPATA31E1Q6ZUB1 1445 aa19.63■□□□□ 0.73
SMAD3-213ENST00000560175 CCDC144AA2RUR9 1427 aa19.62■□□□□ 0.73
SMAD3-213ENST00000560175 TMEM94Q12767 1356 aa19.62■□□□□ 0.73
SMAD3-213ENST00000560175 PPLO60437 1756 aa19.62■□□□□ 0.73
SMAD3-213ENST00000560175 NCOA3Q9Y6Q9 1424 aa19.61■□□□□ 0.73
SMAD3-213ENST00000560175 VGFO15240 615 aaPredicted RBP19.61■□□□□ 0.73
SMAD3-213ENST00000560175 PROSER2Q86WR7 435 aaPredicted RBP19.61■□□□□ 0.73
SMAD3-213ENST00000560175 PTPRUQ92729 1446 aa19.59■□□□□ 0.73
SMAD3-213ENST00000560175 SENP3Q9H4L4 574 aaPredicted RBP19.58■□□□□ 0.72
SMAD3-213ENST00000560175 ANKRD30BQ9BXX2 1392 aa19.57■□□□□ 0.72
SMAD3-213ENST00000560175 SETD1AO15047 1707 aaKnown RBP19.56■□□□□ 0.72
SMAD3-213ENST00000560175 IFT172Q9UG01 1749 aa19.56■□□□□ 0.72
SMAD3-213ENST00000560175 AMOTL2Q9Y2J4 779 aa19.56■□□□□ 0.72
SMAD3-213ENST00000560175 XRN1Q8IZH2 1706 aaKnown RBP19.56■□□□□ 0.72
SMAD3-213ENST00000560175 METP08581 1390 aa19.56■□□□□ 0.72
SMAD3-213ENST00000560175 PIP4K2BP78356 416 aa19.54■□□□□ 0.72
SMAD3-213ENST00000560175 RBM33Q96EV2 1170 aaKnown RBP19.53■□□□□ 0.72
SMAD3-213ENST00000560175 FAM135BQ49AJ0 1406 aa19.52■□□□□ 0.72
SMAD3-213ENST00000560175 PRAG1Q86YV5 1406 aa19.51■□□□□ 0.71
SMAD3-213ENST00000560175 MSH6P52701 1360 aa19.5■□□□□ 0.71
SMAD3-213ENST00000560175 HSPA1LP34931 641 aa19.5■□□□□ 0.71
SMAD3-213ENST00000560175 RGL3Q3MIN7 710 aa19.5■□□□□ 0.71
SMAD3-213ENST00000560175 ADGRF5Q8IZF2 1346 aa19.5■□□□□ 0.71
SMAD3-213ENST00000560175 C19orf44Q9H6X5 657 aa19.49■□□□□ 0.71
SMAD3-213ENST00000560175 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.48■□□□□ 0.71
SMAD3-213ENST00000560175 SCAF1Q9H7N4 1312 aaKnown RBP19.47■□□□□ 0.71
SMAD3-213ENST00000560175 NRXN1Q9ULB1 1477 aa19.47■□□□□ 0.71
SMAD3-213ENST00000560175 PIK3C2GO75747 1445 aa19.45■□□□□ 0.7
SMAD3-213ENST00000560175 SLAIN2Q9P270 581 aa19.45■□□□□ 0.7
SMAD3-213ENST00000560175 DCCP43146 1447 aa19.43■□□□□ 0.7
SMAD3-213ENST00000560175 PTCH1Q13635 1447 aa19.43■□□□□ 0.7
SMAD3-213ENST00000560175 MYOM2P54296 1465 aa19.43■□□□□ 0.7
SMAD3-213ENST00000560175 CADPS2Q86UW7 1296 aa19.42■□□□□ 0.7
SMAD3-213ENST00000560175 ROBO1Q9Y6N7 1651 aa19.42■□□□□ 0.7
SMAD3-213ENST00000560175 STAC3Q96MF2 364 aa19.41■□□□□ 0.7
SMAD3-213ENST00000560175 C14orf93Q9H972 538 aaKnown RBP19.41■□□□□ 0.7
SMAD3-213ENST00000560175 ROBO2Q9HCK4 1378 aa19.4■□□□□ 0.7
SMAD3-213ENST00000560175 TECPR2O15040 1411 aa19.39■□□□□ 0.69
SMAD3-213ENST00000560175 ADGRL3Q9HAR2 1447 aa19.39■□□□□ 0.69
SMAD3-213ENST00000560175 ATF3P18847 181 aa19.38■□□□□ 0.69
SMAD3-213ENST00000560175 ASXL1Q8IXJ9 1541 aa19.38■□□□□ 0.69
SMAD3-213ENST00000560175 ABCC11Q96J66 1382 aa19.38■□□□□ 0.69
SMAD3-213ENST00000560175 LRPPRCP42704 1394 aaKnown RBP19.37■□□□□ 0.69
SMAD3-213ENST00000560175 C14orf37Q86TY3 774 aa19.37■□□□□ 0.69
SMAD3-213ENST00000560175 NALCNQ8IZF0 1738 aa19.37■□□□□ 0.69
SMAD3-213ENST00000560175 SIRT1Q96EB6 747 aa19.36■□□□□ 0.69
SMAD3-213ENST00000560175 LAMC1P11047 1609 aa19.36■□□□□ 0.69
SMAD3-213ENST00000560175 DHX57Q6P158 1386 aaKnown RBP19.35■□□□□ 0.69
SMAD3-213ENST00000560175 KNDC1Q76NI1 1749 aa19.35■□□□□ 0.69
SMAD3-213ENST00000560175 MST1RQ04912 1400 aa19.34■□□□□ 0.69
SMAD3-213ENST00000560175 TMEM132EQ6IEE7 984 aa19.33■□□□□ 0.68
SMAD3-213ENST00000560175 CFAP70Q5T0N1 1121 aa19.32■□□□□ 0.68
SMAD3-213ENST00000560175 YTHDC2Q9H6S0 1430 aaKnown RBP19.32■□□□□ 0.68
SMAD3-213ENST00000560175 TRIM26Q12899 539 aaPredicted RBP19.31■□□□□ 0.68
SMAD3-213ENST00000560175 DCAF11Q8TEB1 546 aa19.31■□□□□ 0.68
SMAD3-213ENST00000560175 AHDC1Q5TGY3 1603 aaPredicted RBP19.3■□□□□ 0.68
SMAD3-213ENST00000560175 BRINP3Q76B58 766 aa19.3■□□□□ 0.68
SMAD3-213ENST00000560175 PHLPP1O60346 1717 aa19.28■□□□□ 0.68
SMAD3-213ENST00000560175 ADGRB1O14514 1584 aa19.28■□□□□ 0.68
SMAD3-213ENST00000560175 COL16A1Q07092 1604 aaPredicted RBP19.28■□□□□ 0.68
SMAD3-213ENST00000560175 DISP3Q9P2K9 1392 aa19.28■□□□□ 0.68
SMAD3-213ENST00000560175 MED1Q15648 1581 aaPredicted RBP19.27■□□□□ 0.68
SMAD3-213ENST00000560175 WAPLQ7Z5K2 1190 aa19.26■□□□□ 0.67
SMAD3-213ENST00000560175 STK26Q9P289 416 aa19.26■□□□□ 0.67
SMAD3-213ENST00000560175 KDM2AQ9Y2K7 1162 aa19.26■□□□□ 0.67
SMAD3-213ENST00000560175 C1orf167Q5SNV9 1468 aa19.26■□□□□ 0.67
SMAD3-213ENST00000560175 CDC42BPGQ6DT37 1551 aa19.25■□□□□ 0.67
SMAD3-213ENST00000560175 NHSL1Q5SYE7 1610 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms