RNA–Protein interactions for RNA: ENST00000560175.5

SMAD3-213, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-213ENST00000560175 NISCHQ9Y2I1 1504 aa32.55■■■□□ 2.8
SMAD3-213ENST00000560175 CCDC180Q9P1Z9 1646 aa29.01■■■□□ 2.23
SMAD3-213ENST00000560175 ABCC9O60706 1549 aa28.42■■■□□ 2.14
SMAD3-213ENST00000560175 RB1CC1Q8TDY2 1594 aa27.33■■□□□ 1.97
SMAD3-213ENST00000560175 NACADO15069 1562 aa27.31■■□□□ 1.96
SMAD3-213ENST00000560175 MYO15BQ96JP2 1530 aa27.18■■□□□ 1.94
SMAD3-213ENST00000560175 DCAF8L2P0C7V8 631 aa27.09■■□□□ 1.93
SMAD3-213ENST00000560175 ZCCHC6Q5VYS8 1495 aaKnown RBP27.07■■□□□ 1.92
SMAD3-213ENST00000560175 DCAF1Q9Y4B6 1507 aa26.99■■□□□ 1.91
SMAD3-213ENST00000560175 UNC13AQ9UPW8 1703 aa26.76■■□□□ 1.87
SMAD3-213ENST00000560175 BICRAQ9NZM4 1560 aa26.58■■□□□ 1.85
SMAD3-213ENST00000560175 PABPN1Q86U42 306 aaKnown RBP eCLIP26.53■■□□□ 1.84
SMAD3-213ENST00000560175 SCRIBQ14160 1630 aa26.33■■□□□ 1.81
SMAD3-213ENST00000560175 DNAJC5BQ9UF47 199 aa26.33■■□□□ 1.81
SMAD3-213ENST00000560175 SHROOM4Q9ULL8 1493 aa26.29■■□□□ 1.8
SMAD3-213ENST00000560175 EIF4G1Q04637 1599 aaKnown RBP25.83■■□□□ 1.73
SMAD3-213ENST00000560175 CC2D2AQ9P2K1 1620 aa25.76■■□□□ 1.71
SMAD3-213ENST00000560175 CECR2Q9BXF3 1484 aa25.59■■□□□ 1.69
SMAD3-213ENST00000560175 SMARCA4P51532 1647 aa25.26■■□□□ 1.63
SMAD3-213ENST00000560175 NCAPD3P42695 1498 aa25.24■■□□□ 1.63
SMAD3-213ENST00000560175 BAZ1AQ9NRL2 1556 aaPredicted RBP25.21■■□□□ 1.63
SMAD3-213ENST00000560175 ATAD2BQ9ULI0 1458 aa25.18■■□□□ 1.62
SMAD3-213ENST00000560175 SMARCA2P51531 1590 aa25.13■■□□□ 1.61
SMAD3-213ENST00000560175 PEG3Q9GZU2 1588 aa25.1■■□□□ 1.61
SMAD3-213ENST00000560175 HMGXB3Q12766 1538 aa25.06■■□□□ 1.6
SMAD3-213ENST00000560175 MROH2BQ7Z745 1585 aa25.05■■□□□ 1.6
SMAD3-213ENST00000560175 BAZ1BQ9UIG0 1483 aaKnown RBP24.9■■□□□ 1.58
SMAD3-213ENST00000560175 WIZO95785 1651 aa24.76■■□□□ 1.55
SMAD3-213ENST00000560175 RSF1Q96T23 1441 aaPredicted RBP24.73■■□□□ 1.55
SMAD3-213ENST00000560175 NESP48681 1621 aa24.58■■□□□ 1.53
SMAD3-213ENST00000560175 LAMC3Q9Y6N6 1575 aa24.54■■□□□ 1.52
SMAD3-213ENST00000560175 TOP2AP11388 1531 aaKnown RBP24.49■■□□□ 1.51
SMAD3-213ENST00000560175 ERCC6Q03468 1493 aa24.46■■□□□ 1.51
SMAD3-213ENST00000560175 CADPSQ9ULU8 1353 aa24.45■■□□□ 1.5
SMAD3-213ENST00000560175 CUX2O14529 1486 aa24.38■■□□□ 1.49
SMAD3-213ENST00000560175 PDS5BQ9NTI5 1447 aa24.36■■□□□ 1.49
SMAD3-213ENST00000560175 KIF21AQ7Z4S6 1674 aa24.3■■□□□ 1.48
SMAD3-213ENST00000560175 CFTRP13569 1480 aa24.29■■□□□ 1.48
SMAD3-213ENST00000560175 THOC2Q8NI27 1593 aaKnown RBP24.27■■□□□ 1.48
SMAD3-213ENST00000560175 CCDC88BA6NC98 1476 aa24.23■■□□□ 1.47
SMAD3-213ENST00000560175 FANCD2Q9BXW9 1451 aa24.12■■□□□ 1.45
SMAD3-213ENST00000560175 MRC2Q9UBG0 1479 aa24.1■■□□□ 1.45
SMAD3-213ENST00000560175 CEP164Q9UPV0 1460 aa24.09■■□□□ 1.45
SMAD3-213ENST00000560175 PRDM2Q13029 1718 aa24.08■■□□□ 1.45
SMAD3-213ENST00000560175 WDR62O43379 1518 aa24.06■■□□□ 1.44
SMAD3-213ENST00000560175 URB2Q14146 1524 aaKnown RBP23.91■■□□□ 1.42
SMAD3-213ENST00000560175 SUPT5HO00267 1087 aaKnown RBP23.86■■□□□ 1.41
SMAD3-213ENST00000560175 DNAJC5Q9H3Z4 198 aa23.84■■□□□ 1.41
SMAD3-213ENST00000560175 ABCC8Q09428 1581 aa23.76■■□□□ 1.39
SMAD3-213ENST00000560175 TOPBP1Q92547 1522 aa23.74■■□□□ 1.39
SMAD3-213ENST00000560175 DNMBPQ6XZF7 1577 aa23.69■■□□□ 1.38
SMAD3-213ENST00000560175 IFT140Q96RY7 1462 aa23.62■■□□□ 1.37
SMAD3-213ENST00000560175 TARBP1Q13395 1621 aaKnown RBP23.53■■□□□ 1.36
SMAD3-213ENST00000560175 POLA1P09884 1462 aaPredicted RBP23.53■■□□□ 1.36
SMAD3-213ENST00000560175 ZNF608Q9ULD9 1512 aaPredicted RBP23.52■■□□□ 1.36
SMAD3-213ENST00000560175 CUX1P39880 1505 aa23.51■■□□□ 1.35
SMAD3-213ENST00000560175 FGD5Q6ZNL6 1462 aa23.43■■□□□ 1.34
SMAD3-213ENST00000560175 SOGA1O94964 1423 aa23.42■■□□□ 1.34
SMAD3-213ENST00000560175 RAD54L2Q9Y4B4 1467 aa23.4■■□□□ 1.34
SMAD3-213ENST00000560175 EIF4G3O43432 1585 aaKnown RBP23.4■■□□□ 1.34
SMAD3-213ENST00000560175 AQRO60306 1485 aaKnown RBP eCLIP23.36■■□□□ 1.336e-7■■■■□ 20.8
SMAD3-213ENST00000560175 WDR97A6NE52 1622 aa23.35■■□□□ 1.33
SMAD3-213ENST00000560175 OSCARQ8IYS5 282 aa23.33■■□□□ 1.33
SMAD3-213ENST00000560175 BIVM-ERCC5R4GMW8 1640 aa23.29■■□□□ 1.32
SMAD3-213ENST00000560175 TDRD9Q8NDG6 1382 aaKnown RBP23.28■■□□□ 1.32
SMAD3-213ENST00000560175 WRNQ14191 1432 aaPredicted RBP eCLIP23.28■■□□□ 1.32
SMAD3-213ENST00000560175 TOP2BQ02880 1626 aa23.28■■□□□ 1.32
SMAD3-213ENST00000560175 ABCA10Q8WWZ4 1543 aa23.23■■□□□ 1.31
SMAD3-213ENST00000560175 SYNJ1O43426 1573 aa23.23■■□□□ 1.31
SMAD3-213ENST00000560175 GRIN2BQ13224 1484 aa23.17■■□□□ 1.3
SMAD3-213ENST00000560175 GAPVD1Q14C86 1478 aa23.15■■□□□ 1.3
SMAD3-213ENST00000560175 ABCA5Q8WWZ7 1642 aa23.15■■□□□ 1.3
SMAD3-213ENST00000560175 CHD1O14646 1710 aa23.14■■□□□ 1.3
SMAD3-213ENST00000560175 MAGI1Q96QZ7 1491 aaPredicted RBP23.13■■□□□ 1.29
SMAD3-213ENST00000560175 SNAPC4Q5SXM2 1469 aa23.11■■□□□ 1.29
SMAD3-213ENST00000560175 PBRM1Q86U86 1689 aa23.09■■□□□ 1.29
SMAD3-213ENST00000560175 SYNJ2O15056 1496 aa23.04■■□□□ 1.28
SMAD3-213ENST00000560175 FBLN2P98095 1184 aa23.02■■□□□ 1.28
SMAD3-213ENST00000560175 CHMP7Q8WUX9 453 aaPredicted RBP23■■□□□ 1.27
SMAD3-213ENST00000560175 ERICH3Q5RHP9 1530 aa22.96■■□□□ 1.27
SMAD3-213ENST00000560175 RIMBP3CA6NJZ7 1639 aa22.95■■□□□ 1.26
SMAD3-213ENST00000560175 RIMBP3BA6NNM3 1639 aa22.95■■□□□ 1.26
SMAD3-213ENST00000560175 RIMBP3Q9UFD9 1639 aa22.95■■□□□ 1.26
SMAD3-213ENST00000560175 CLASP1Q7Z460 1538 aa22.93■■□□□ 1.26
SMAD3-213ENST00000560175 ARHGEF11O15085 1522 aa22.92■■□□□ 1.26
SMAD3-213ENST00000560175 ADAMTS12P58397 1594 aa22.9■■□□□ 1.26
SMAD3-213ENST00000560175 FHAD1B1AJZ9 1412 aa22.88■■□□□ 1.25
SMAD3-213ENST00000560175 GRIN2AQ12879 1464 aa22.86■■□□□ 1.25
SMAD3-213ENST00000560175 TRIM41Q8WV44 630 aa22.82■■□□□ 1.24
SMAD3-213ENST00000560175 NUP160Q12769 1436 aa22.82■■□□□ 1.24
SMAD3-213ENST00000560175 KIF27Q86VH2 1401 aa22.8■■□□□ 1.24
SMAD3-213ENST00000560175 IGF1RP08069 1367 aa22.79■■□□□ 1.24
SMAD3-213ENST00000560175 CEP170Q5SW79 1584 aa22.76■■□□□ 1.23
SMAD3-213ENST00000560175 ARAP1Q96P48 1450 aa22.74■■□□□ 1.23
SMAD3-213ENST00000560175 CYB5RLQ6IPT4 315 aa22.7■■□□□ 1.22
SMAD3-213ENST00000560175 CUL7Q14999 1698 aa22.69■■□□□ 1.22
SMAD3-213ENST00000560175 SHROOM2Q13796 1616 aa22.67■■□□□ 1.22
SMAD3-213ENST00000560175 CARMIL1Q5VZK9 1371 aa22.61■■□□□ 1.21
SMAD3-213ENST00000560175 RUSC2Q8N2Y8 1516 aa22.57■■□□□ 1.2
SMAD3-213ENST00000560175 JPH4Q96JJ6 628 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms