RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 ADGRF5Q8IZF2 1346 aa15.5■□□□□ 0.07
TDP1-211ENST00000555178 KDM5AP29375 1690 aaKnown RBP15.49■□□□□ 0.07
TDP1-211ENST00000555178 TIMELESSQ9UNS1 1208 aa15.48■□□□□ 0.07
TDP1-211ENST00000555178 LTKP29376 864 aa15.47■□□□□ 0.07
TDP1-211ENST00000555178 ZFYVE9O95405 1425 aa15.47■□□□□ 0.07
TDP1-211ENST00000555178 RIMS2Q9UQ26 1411 aa15.46■□□□□ 0.07
TDP1-211ENST00000555178 HSPA2P54652 639 aa15.45■□□□□ 0.06
TDP1-211ENST00000555178 UHRF1BP1Q6BDS2 1440 aa15.45■□□□□ 0.06
TDP1-211ENST00000555178 PRAG1Q86YV5 1406 aa15.45■□□□□ 0.06
TDP1-211ENST00000555178 TMEM2Q9UHN6 1383 aa15.45■□□□□ 0.06
TDP1-211ENST00000555178 TRPM1Q7Z4N2 1603 aa15.44■□□□□ 0.06
TDP1-211ENST00000555178 LMTK3Q96Q04 1460 aa15.43■□□□□ 0.06
TDP1-211ENST00000555178 NBPF1Q3BBV0 1214 aa15.43■□□□□ 0.06
TDP1-211ENST00000555178 NRXN3Q9Y4C0 1643 aa15.43■□□□□ 0.06
TDP1-211ENST00000555178 ARHGAP23Q9P227 1491 aa15.43■□□□□ 0.06
TDP1-211ENST00000555178 IQGAP1P46940 1657 aa15.42■□□□□ 0.06
TDP1-211ENST00000555178 SLIT1O75093 1534 aa15.42■□□□□ 0.06
TDP1-211ENST00000555178 MYOM2P54296 1465 aa15.42■□□□□ 0.06
TDP1-211ENST00000555178 NRXN1Q9ULB1 1477 aa15.42■□□□□ 0.06
TDP1-211ENST00000555178 CFAP70Q5T0N1 1121 aa15.41■□□□□ 0.06
TDP1-211ENST00000555178 THEMISQ8N1K5 641 aaPredicted RBP15.4■□□□□ 0.06
TDP1-211ENST00000555178 RPGRIP1LQ68CZ1 1315 aa15.4■□□□□ 0.06
TDP1-211ENST00000555178 SETD1AO15047 1707 aaKnown RBP15.4■□□□□ 0.06
TDP1-211ENST00000555178 TXNDC2Q86VQ3 553 aa15.4■□□□□ 0.06
TDP1-211ENST00000555178 PIK3C2GO75747 1445 aa15.4■□□□□ 0.06
TDP1-211ENST00000555178 NCKAP5LQ9HCH0 1330 aa15.38■□□□□ 0.05
TDP1-211ENST00000555178 POLR1AO95602 1720 aaPredicted RBP15.38■□□□□ 0.05
TDP1-211ENST00000555178 STRCQ7RTU9 1775 aa15.38■□□□□ 0.05
TDP1-211ENST00000555178 ASXL1Q8IXJ9 1541 aa15.37■□□□□ 0.05
TDP1-211ENST00000555178 VGFO15240 615 aaPredicted RBP15.37■□□□□ 0.05
TDP1-211ENST00000555178 TMEM132EQ6IEE7 984 aa15.37■□□□□ 0.05
TDP1-211ENST00000555178 ALKQ9UM73 1620 aa15.36■□□□□ 0.05
TDP1-211ENST00000555178 HIRIP3Q9BW71 556 aaPredicted RBP15.36■□□□□ 0.05
TDP1-211ENST00000555178 SCAF11Q99590 1463 aaKnown RBP15.36■□□□□ 0.05
TDP1-211ENST00000555178 RALGAPBQ86X10 1494 aa15.35■□□□□ 0.05
TDP1-211ENST00000555178 KIAA1210Q9ULL0 1709 aa15.35■□□□□ 0.05
TDP1-211ENST00000555178 SLC26A8Q96RN1 970 aa15.35■□□□□ 0.05
TDP1-211ENST00000555178 ADAMTS13Q76LX8 1427 aa15.34■□□□□ 0.05
TDP1-211ENST00000555178 C14orf93Q9H972 538 aaKnown RBP15.33■□□□□ 0.05
TDP1-211ENST00000555178 ADGRB1O14514 1584 aa15.33■□□□□ 0.04
TDP1-211ENST00000555178 SETBP1Q9Y6X0 1596 aa15.33■□□□□ 0.04
TDP1-211ENST00000555178 PLEKHG1Q9ULL1 1385 aa15.32■□□□□ 0.04
TDP1-211ENST00000555178 ANKLE2Q86XL3 938 aa15.32■□□□□ 0.04
TDP1-211ENST00000555178 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.32■□□□□ 0.04
TDP1-211ENST00000555178 EID1Q9Y6B2 187 aa15.32■□□□□ 0.04
TDP1-211ENST00000555178 METP08581 1390 aa15.31■□□□□ 0.04
TDP1-211ENST00000555178 BCANQ96GW7 911 aa15.31■□□□□ 0.04
TDP1-211ENST00000555178 ROCK2O75116 1388 aaKnown RBP15.31■□□□□ 0.04
TDP1-211ENST00000555178 MED14O60244 1454 aa15.31■□□□□ 0.04
TDP1-211ENST00000555178 LAMC1P11047 1609 aa15.29■□□□□ 0.04
TDP1-211ENST00000555178 STAC3Q96MF2 364 aa15.29■□□□□ 0.04
TDP1-211ENST00000555178 CARD11Q9BXL7 1154 aa15.29■□□□□ 0.04
TDP1-211ENST00000555178 GPRASP1Q5JY77 1395 aa15.28■□□□□ 0.04
TDP1-211ENST00000555178 PTPRUQ92729 1446 aa15.28■□□□□ 0.04
TDP1-211ENST00000555178 STK26Q9P289 416 aa15.28■□□□□ 0.04
TDP1-211ENST00000555178 NPHP4O75161 1426 aaPredicted RBP15.27■□□□□ 0.04
TDP1-211ENST00000555178 HDGFP51858 240 aaKnown RBP15.27■□□□□ 0.03
TDP1-211ENST00000555178 ARHGEF28Q8N1W1 1705 aaKnown RBP15.26■□□□□ 0.03
TDP1-211ENST00000555178 HSPA5P11021 654 aaKnown RBP15.26■□□□□ 0.03
TDP1-211ENST00000555178 TRAK1Q9UPV9 953 aa15.26■□□□□ 0.03
TDP1-211ENST00000555178 STRCP1A6NGW2 1772 aa15.26■□□□□ 0.03
TDP1-211ENST00000555178 CHD2O14647 1828 aaKnown RBP15.25■□□□□ 0.03
TDP1-211ENST00000555178 USP47Q96K76 1375 aa15.24■□□□□ 0.03
TDP1-211ENST00000555178 ZNF316A6NFI3 1004 aaPredicted RBP15.24■□□□□ 0.03
TDP1-211ENST00000555178 YTHDC2Q9H6S0 1430 aaKnown RBP15.23■□□□□ 0.03
TDP1-211ENST00000555178 ST20-MTHFSA0A0A6YYL1 179 aa15.22■□□□□ 0.03
TDP1-211ENST00000555178 TBX22Q9Y458 520 aa15.22■□□□□ 0.03
TDP1-211ENST00000555178 PLEKHH1Q9ULM0 1364 aa15.21■□□□□ 0.03
TDP1-211ENST00000555178 C11orf95C9JLR9 678 aaPredicted RBP15.21■□□□□ 0.03
TDP1-211ENST00000555178 AEBP2Q6ZN18 517 aaPredicted RBP15.21■□□□□ 0.03
TDP1-211ENST00000555178 SAFB2Q14151 953 aaKnown RBP eCLIP15.2■□□□□ 0.02
TDP1-211ENST00000555178 WAPLQ7Z5K2 1190 aa15.2■□□□□ 0.02
TDP1-211ENST00000555178 RBM33Q96EV2 1170 aaKnown RBP15.2■□□□□ 0.02
TDP1-211ENST00000555178 DIP2AQ14689 1571 aa15.2■□□□□ 0.02
TDP1-211ENST00000555178 XRN1Q8IZH2 1706 aaKnown RBP15.2■□□□□ 0.02
TDP1-211ENST00000555178 EIF4G2P78344 907 aaKnown RBP eCLIP15.2■□□□□ 0.02
TDP1-211ENST00000555178 KNDC1Q76NI1 1749 aa15.19■□□□□ 0.02
TDP1-211ENST00000555178 QRICH2Q9H0J4 1663 aa15.19■□□□□ 0.02
TDP1-211ENST00000555178 LRPPRCP42704 1394 aaKnown RBP15.19■□□□□ 0.02
TDP1-211ENST00000555178 ROBO2Q9HCK4 1378 aa15.19■□□□□ 0.02
TDP1-211ENST00000555178 AMOTL2Q9Y2J4 779 aa15.19■□□□□ 0.02
TDP1-211ENST00000555178 KCNA6P17658 529 aa15.17■□□□□ 0.02
TDP1-211ENST00000555178 TESK2Q96S53 571 aa15.17■□□□□ 0.02
TDP1-211ENST00000555178 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.17■□□□□ 0.02
TDP1-211ENST00000555178 PRAM1Q96QH2 718 aa15.16■□□□□ 0.02
TDP1-211ENST00000555178 ABCC11Q96J66 1382 aa15.15■□□□□ 0.02
TDP1-211ENST00000555178 CPS1P31327 1500 aa15.15■□□□□ 0.02
TDP1-211ENST00000555178 ZNF335Q9H4Z2 1342 aaPredicted RBP15.14■□□□□ 0.01
TDP1-211ENST00000555178 XIRP1Q702N8 1843 aaKnown RBP15.14■□□□□ 0.01
TDP1-211ENST00000555178 TECPR2O15040 1411 aa15.14■□□□□ 0.01
TDP1-211ENST00000555178 NWD1Q149M9 1564 aa15.13■□□□□ 0.01
TDP1-211ENST00000555178 DLC1Q96QB1 1528 aa15.13■□□□□ 0.01
TDP1-211ENST00000555178 DISP3Q9P2K9 1392 aa15.13■□□□□ 0.01
TDP1-211ENST00000555178 MINK1Q8N4C8 1332 aaPredicted RBP15.13■□□□□ 0.01
TDP1-211ENST00000555178 CENPJQ9HC77 1338 aaPredicted RBP15.13■□□□□ 0.01
TDP1-211ENST00000555178 NALCNQ8IZF0 1738 aa15.11■□□□□ 0.01
TDP1-211ENST00000555178 PIK3R4Q99570 1358 aa15.11■□□□□ 0.01
TDP1-211ENST00000555178 TULP4Q9NRJ4 1543 aa15.1■□□□□ 0.01
TDP1-211ENST00000555178 POGKQ9P215 609 aa15.1■□□□□ 0.01
TDP1-211ENST00000555178 WASHC2AQ641Q2 1341 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms