RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 SIN3AQ96ST3 1273 aa24.91■■□□□ 1.58
SHOX-204ENST00000554971 LTKP29376 864 aa24.9■■□□□ 1.58
SHOX-204ENST00000554971 NEXMIFQ5QGS0 1516 aa24.9■■□□□ 1.58
SHOX-204ENST00000554971 IFT172Q9UG01 1749 aa24.89■■□□□ 1.58
SHOX-204ENST00000554971 PPLO60437 1756 aa24.89■■□□□ 1.58
SHOX-204ENST00000554971 RIMS2Q9UQ26 1411 aa24.88■■□□□ 1.57
SHOX-204ENST00000554971 NCKAP5LQ9HCH0 1330 aa24.87■■□□□ 1.57
SHOX-204ENST00000554971 SCAF11Q99590 1463 aaKnown RBP24.86■■□□□ 1.57
SHOX-204ENST00000554971 RGL3Q3MIN7 710 aa24.86■■□□□ 1.57
SHOX-204ENST00000554971 ZNF326Q5BKZ1 582 aaKnown RBP24.85■■□□□ 1.57
SHOX-204ENST00000554971 NUTM2DQ5VT03 806 aaPredicted RBP24.85■■□□□ 1.57
SHOX-204ENST00000554971 ANKLE2Q86XL3 938 aa24.84■■□□□ 1.57
SHOX-204ENST00000554971 SCAF1Q9H7N4 1312 aaKnown RBP24.84■■□□□ 1.57
SHOX-204ENST00000554971 TXNDC2Q86VQ3 553 aa24.83■■□□□ 1.57
SHOX-204ENST00000554971 MED14O60244 1454 aa24.83■■□□□ 1.57
SHOX-204ENST00000554971 IQGAP1P46940 1657 aa24.81■■□□□ 1.56
SHOX-204ENST00000554971 NEUROD1Q13562 356 aa24.8■■□□□ 1.56
SHOX-204ENST00000554971 EID1Q9Y6B2 187 aa24.79■■□□□ 1.56
SHOX-204ENST00000554971 RPGRIP1LQ68CZ1 1315 aa24.78■■□□□ 1.56
SHOX-204ENST00000554971 NRXN3Q9Y4C0 1643 aa24.78■■□□□ 1.56
SHOX-204ENST00000554971 NPHP4O75161 1426 aaPredicted RBP24.77■■□□□ 1.56
SHOX-204ENST00000554971 TIMELESSQ9UNS1 1208 aa24.76■■□□□ 1.55
SHOX-204ENST00000554971 SENP3Q9H4L4 574 aaPredicted RBP24.76■■□□□ 1.55
SHOX-204ENST00000554971 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.75■■□□□ 1.55
SHOX-204ENST00000554971 PLEKHG1Q9ULL1 1385 aa24.75■■□□□ 1.55
SHOX-204ENST00000554971 ADGRF5Q8IZF2 1346 aa24.73■■□□□ 1.55
SHOX-204ENST00000554971 PPP1R15AO75807 674 aaPredicted RBP24.73■■□□□ 1.55
SHOX-204ENST00000554971 HDGFP51858 240 aaKnown RBP24.72■■□□□ 1.55
SHOX-204ENST00000554971 SETBP1Q9Y6X0 1596 aa24.72■■□□□ 1.55
SHOX-204ENST00000554971 MYOM2P54296 1465 aa24.72■■□□□ 1.55
SHOX-204ENST00000554971 NRXN1Q9ULB1 1477 aa24.72■■□□□ 1.55
SHOX-204ENST00000554971 ADAMTS13Q76LX8 1427 aa24.71■■□□□ 1.55
SHOX-204ENST00000554971 DCAF11Q8TEB1 546 aa24.71■■□□□ 1.55
SHOX-204ENST00000554971 L3MBTL2Q969R5 705 aa24.71■■□□□ 1.55
SHOX-204ENST00000554971 VGFO15240 615 aaPredicted RBP24.7■■□□□ 1.54
SHOX-204ENST00000554971 SETD1AO15047 1707 aaKnown RBP24.7■■□□□ 1.54
SHOX-204ENST00000554971 PIK3C2GO75747 1445 aa24.68■■□□□ 1.54
SHOX-204ENST00000554971 MIER1Q8N108 512 aa24.68■■□□□ 1.54
SHOX-204ENST00000554971 SLC26A8Q96RN1 970 aa24.67■■□□□ 1.54
SHOX-204ENST00000554971 KDM2AQ9Y2K7 1162 aa24.67■■□□□ 1.54
SHOX-204ENST00000554971 DMRT2Q9Y5R5 561 aa24.66■■□□□ 1.54
SHOX-204ENST00000554971 ALKQ9UM73 1620 aa24.64■■□□□ 1.53
SHOX-204ENST00000554971 STRCP1A6NGW2 1772 aa24.63■■□□□ 1.53
SHOX-204ENST00000554971 DIP2AQ14689 1571 aa24.63■■□□□ 1.53
SHOX-204ENST00000554971 TONSLQ96HA7 1378 aa24.62■■□□□ 1.53
SHOX-204ENST00000554971 BCANQ96GW7 911 aa24.62■■□□□ 1.53
SHOX-204ENST00000554971 PRAG1Q86YV5 1406 aa24.6■■□□□ 1.53
SHOX-204ENST00000554971 CHD2O14647 1828 aaKnown RBP24.6■■□□□ 1.53
SHOX-204ENST00000554971 ASXL1Q8IXJ9 1541 aa24.59■■□□□ 1.53
SHOX-204ENST00000554971 STAC3Q96MF2 364 aa24.59■■□□□ 1.53
SHOX-204ENST00000554971 TBX22Q9Y458 520 aa24.59■■□□□ 1.53
SHOX-204ENST00000554971 METP08581 1390 aa24.59■■□□□ 1.53
SHOX-204ENST00000554971 ZNF335Q9H4Z2 1342 aaPredicted RBP24.58■■□□□ 1.52
SHOX-204ENST00000554971 LAMC1P11047 1609 aa24.56■■□□□ 1.52
SHOX-204ENST00000554971 CFAP70Q5T0N1 1121 aa24.55■■□□□ 1.52
SHOX-204ENST00000554971 PTPRUQ92729 1446 aa24.55■■□□□ 1.52
SHOX-204ENST00000554971 C14orf93Q9H972 538 aaKnown RBP24.55■■□□□ 1.52
SHOX-204ENST00000554971 KIAA1210Q9ULL0 1709 aa24.53■■□□□ 1.52
SHOX-204ENST00000554971 NWD1Q149M9 1564 aa24.53■■□□□ 1.52
SHOX-204ENST00000554971 LTBP4Q8N2S1 1624 aa24.53■■□□□ 1.52
SHOX-204ENST00000554971 NBPF8Q3BBV2 869 aa24.53■■□□□ 1.52
SHOX-204ENST00000554971 ADGRB1O14514 1584 aa24.52■■□□□ 1.52
SHOX-204ENST00000554971 TRPM1Q7Z4N2 1603 aa24.52■■□□□ 1.52
SHOX-204ENST00000554971 XRN1Q8IZH2 1706 aaKnown RBP24.52■■□□□ 1.52
SHOX-204ENST00000554971 PIK3R4Q99570 1358 aa24.51■■□□□ 1.51
SHOX-204ENST00000554971 TMEM132EQ6IEE7 984 aa24.5■■□□□ 1.51
SHOX-204ENST00000554971 GTF3C3Q9Y5Q9 886 aa24.47■■□□□ 1.51
SHOX-204ENST00000554971 KCNA6P17658 529 aa24.47■■□□□ 1.51
SHOX-204ENST00000554971 PELP1Q8IZL8 1130 aaKnown RBP24.47■■□□□ 1.51
SHOX-204ENST00000554971 NBPF1Q3BBV0 1214 aa24.46■■□□□ 1.51
SHOX-204ENST00000554971 XIRP1Q702N8 1843 aaKnown RBP24.45■■□□□ 1.5
SHOX-204ENST00000554971 AMOTL2Q9Y2J4 779 aa24.45■■□□□ 1.5
SHOX-204ENST00000554971 KNDC1Q76NI1 1749 aa24.43■■□□□ 1.5
SHOX-204ENST00000554971 YTHDC2Q9H6S0 1430 aaKnown RBP24.43■■□□□ 1.5
SHOX-204ENST00000554971 NKTRP30414 1462 aaKnown RBP24.42■■□□□ 1.5
SHOX-204ENST00000554971 CPS1P31327 1500 aa24.41■■□□□ 1.5
SHOX-204ENST00000554971 LRRC7Q96NW7 1537 aa24.4■■□□□ 1.5
SHOX-204ENST00000554971 RALGAPBQ86X10 1494 aa24.4■■□□□ 1.5
SHOX-204ENST00000554971 LRPPRCP42704 1394 aaKnown RBP24.4■■□□□ 1.5
SHOX-204ENST00000554971 TECPR2O15040 1411 aa24.4■■□□□ 1.5
SHOX-204ENST00000554971 ROBO2Q9HCK4 1378 aa24.39■■□□□ 1.49
SHOX-204ENST00000554971 ABCC11Q96J66 1382 aa24.38■■□□□ 1.49
SHOX-204ENST00000554971 STK26Q9P289 416 aa24.38■■□□□ 1.49
SHOX-204ENST00000554971 PTCH1Q13635 1447 aa24.38■■□□□ 1.49
SHOX-204ENST00000554971 RBM33Q96EV2 1170 aaKnown RBP24.37■■□□□ 1.49
SHOX-204ENST00000554971 ARHGEF28Q8N1W1 1705 aaKnown RBP24.37■■□□□ 1.49
SHOX-204ENST00000554971 GPRASP1Q5JY77 1395 aa24.36■■□□□ 1.49
SHOX-204ENST00000554971 YTHDC1Q96MU7 727 aaKnown RBP24.35■■□□□ 1.49
SHOX-204ENST00000554971 ROCK2O75116 1388 aaKnown RBP24.35■■□□□ 1.49
SHOX-204ENST00000554971 TMEM94Q12767 1356 aa24.33■■□□□ 1.49
SHOX-204ENST00000554971 DLC1Q96QB1 1528 aa24.33■■□□□ 1.48
SHOX-204ENST00000554971 PLEKHH1Q9ULM0 1364 aa24.32■■□□□ 1.48
SHOX-204ENST00000554971 TRAK1Q9UPV9 953 aa24.32■■□□□ 1.48
SHOX-204ENST00000554971 PROSER2Q86WR7 435 aaPredicted RBP24.31■■□□□ 1.48
SHOX-204ENST00000554971 NALCNQ8IZF0 1738 aa24.31■■□□□ 1.48
SHOX-204ENST00000554971 WAPLQ7Z5K2 1190 aa24.3■■□□□ 1.48
SHOX-204ENST00000554971 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.3■■□□□ 1.48
SHOX-204ENST00000554971 FAM135BQ49AJ0 1406 aa24.29■■□□□ 1.48
SHOX-204ENST00000554971 CERKQ8TCT0 537 aa24.26■■□□□ 1.47
SHOX-204ENST00000554971 CARD11Q9BXL7 1154 aa24.26■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms