RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 STAG3Q9UJ98 1225 aa21.79■■□□□ 1.08
SHMT2-208ENST00000553868 AFF2P51816 1311 aa21.79■■□□□ 1.08
SHMT2-208ENST00000553868 SETBP1Q9Y6X0 1596 aa21.77■■□□□ 1.08
SHMT2-208ENST00000553868 KDM5AP29375 1690 aaKnown RBP21.76■■□□□ 1.07
SHMT2-208ENST00000553868 ARHGEF5Q12774 1597 aa21.76■■□□□ 1.07
SHMT2-208ENST00000553868 NUTM2DQ5VT03 806 aaPredicted RBP21.76■■□□□ 1.07
SHMT2-208ENST00000553868 EIF2AK4Q9P2K8 1649 aaKnown RBP21.75■■□□□ 1.07
SHMT2-208ENST00000553868 EFCAB6Q5THR3 1501 aa21.74■■□□□ 1.07
SHMT2-208ENST00000553868 BCANQ96GW7 911 aa21.73■■□□□ 1.07
SHMT2-208ENST00000553868 AHDC1Q5TGY3 1603 aaPredicted RBP21.73■■□□□ 1.07
SHMT2-208ENST00000553868 FAM50AQ14320 339 aaKnown RBP21.72■■□□□ 1.07
SHMT2-208ENST00000553868 IDI1Q13907 227 aa21.71■■□□□ 1.07
SHMT2-208ENST00000553868 ARHGAP31Q2M1Z3 1444 aa21.71■■□□□ 1.07
SHMT2-208ENST00000553868 DIP2AQ14689 1571 aa21.7■■□□□ 1.06
SHMT2-208ENST00000553868 ZRANB1Q9UGI0 708 aa21.7■■□□□ 1.06
SHMT2-208ENST00000553868 QTRT2Q9H974 415 aaKnown RBP21.69■■□□□ 1.06
SHMT2-208ENST00000553868 PTPN23Q9H3S7 1636 aa21.69■■□□□ 1.06
SHMT2-208ENST00000553868 CHD2O14647 1828 aaKnown RBP21.67■■□□□ 1.06
SHMT2-208ENST00000553868 RBM6P78332 1123 aaKnown RBP21.67■■□□□ 1.06
SHMT2-208ENST00000553868 C14orf37Q86TY3 774 aa21.67■■□□□ 1.06
SHMT2-208ENST00000553868 MAST1Q9Y2H9 1570 aa21.66■■□□□ 1.06
SHMT2-208ENST00000553868 C8orf37Q96NL8 207 aa21.66■■□□□ 1.06
SHMT2-208ENST00000553868 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.65■■□□□ 1.06
SHMT2-208ENST00000553868 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.64■■□□□ 1.06
SHMT2-208ENST00000553868 BRINP3Q76B58 766 aa21.62■■□□□ 1.05
SHMT2-208ENST00000553868 ATAD2Q6PL18 1390 aa21.61■■□□□ 1.05
SHMT2-208ENST00000553868 EP400Q96L91 3159 aa21.6■■□□□ 1.05
SHMT2-208ENST00000553868 CADPS2Q86UW7 1296 aa21.6■■□□□ 1.05
SHMT2-208ENST00000553868 DUOX2Q9NRD8 1548 aa21.6■■□□□ 1.05
SHMT2-208ENST00000553868 ATF3P18847 181 aa21.59■■□□□ 1.05
SHMT2-208ENST00000553868 ADGRB3O60242 1522 aa21.59■■□□□ 1.05
SHMT2-208ENST00000553868 ITGAEP38570 1179 aa21.58■■□□□ 1.05
SHMT2-208ENST00000553868 C19orf44Q9H6X5 657 aa21.57■■□□□ 1.04
SHMT2-208ENST00000553868 NCOA3Q9Y6Q9 1424 aa21.55■■□□□ 1.04
SHMT2-208ENST00000553868 PLEKHG1Q9ULL1 1385 aa21.54■■□□□ 1.04
SHMT2-208ENST00000553868 DDX17Q92841 729 aaKnown RBP21.54■■□□□ 1.04
SHMT2-208ENST00000553868 SETD5Q9C0A6 1442 aa21.54■■□□□ 1.04
SHMT2-208ENST00000553868 FOXD1Q16676 465 aa21.53■■□□□ 1.04
SHMT2-208ENST00000553868 ZFYVE9O95405 1425 aa21.53■■□□□ 1.04
SHMT2-208ENST00000553868 MYO5BQ9ULV0 1848 aa21.52■■□□□ 1.04
SHMT2-208ENST00000553868 KIF15Q9NS87 1388 aa21.52■■□□□ 1.04
SHMT2-208ENST00000553868 ASXL1Q8IXJ9 1541 aa21.52■■□□□ 1.04
SHMT2-208ENST00000553868 ADAMTS2O95450 1211 aa21.52■■□□□ 1.04
SHMT2-208ENST00000553868 NGLY1Q96IV0 654 aa21.52■■□□□ 1.04
SHMT2-208ENST00000553868 RRP7BPQ9NSQ0 103 aa21.52■■□□□ 1.04
SHMT2-208ENST00000553868 PPP1R15AO75807 674 aaPredicted RBP21.51■■□□□ 1.03
SHMT2-208ENST00000553868 NOS1P29475 1434 aa21.5■■□□□ 1.03
SHMT2-208ENST00000553868 PNPLA6Q8IY17 1366 aa21.49■■□□□ 1.03
SHMT2-208ENST00000553868 DAPK1P53355 1430 aa21.49■■□□□ 1.03
SHMT2-208ENST00000553868 TBX22Q9Y458 520 aa21.49■■□□□ 1.03
SHMT2-208ENST00000553868 NHSL1Q5SYE7 1610 aa21.48■■□□□ 1.03
SHMT2-208ENST00000553868 ERBINQ96RT1 1412 aa21.48■■□□□ 1.03
SHMT2-208ENST00000553868 RIMS2Q9UQ26 1411 aa21.48■■□□□ 1.03
SHMT2-208ENST00000553868 KANK1Q14678 1352 aa21.48■■□□□ 1.03
SHMT2-208ENST00000553868 LRRC59Q96AG4 307 aaKnown RBP21.47■■□□□ 1.03
SHMT2-208ENST00000553868 ABCC5O15440 1437 aa21.46■■□□□ 1.03
SHMT2-208ENST00000553868 ADAMTS13Q76LX8 1427 aa21.46■■□□□ 1.03
SHMT2-208ENST00000553868 USP21Q9UK80 565 aa21.45■■□□□ 1.02
SHMT2-208ENST00000553868 LMTK2Q8IWU2 1503 aa21.45■■□□□ 1.02
SHMT2-208ENST00000553868 SLC52A1Q9NWF4 448 aa21.43■■□□□ 1.02
SHMT2-208ENST00000553868 ROCK1Q13464 1354 aa21.43■■□□□ 1.02
SHMT2-208ENST00000553868 GCC2Q8IWJ2 1684 aa21.43■■□□□ 1.02
SHMT2-208ENST00000553868 MST1RQ04912 1400 aa21.42■■□□□ 1.02
SHMT2-208ENST00000553868 HFM1A2PYH4 1435 aa21.41■■□□□ 1.02
SHMT2-208ENST00000553868 PTPRUQ92729 1446 aa21.41■■□□□ 1.02
SHMT2-208ENST00000553868 TRPC5Q9UL62 973 aaPredicted RBP21.41■■□□□ 1.02
SHMT2-208ENST00000553868 AMOTL2Q9Y2J4 779 aa21.41■■□□□ 1.02
SHMT2-208ENST00000553868 CCDC125Q86Z20 511 aa21.39■■□□□ 1.01
SHMT2-208ENST00000553868 CROCC2H7BZ55 1655 aa21.39■■□□□ 1.01
SHMT2-208ENST00000553868 TMEM131LA2VDJ0 1609 aa21.38■■□□□ 1.01
SHMT2-208ENST00000553868 HRCP23327 699 aa21.38■■□□□ 1.01
SHMT2-208ENST00000553868 DEFB132Q7Z7B7 95 aa21.37■■□□□ 1.01
SHMT2-208ENST00000553868 CHIC2Q9UKJ5 165 aa21.37■■□□□ 1.01
SHMT2-208ENST00000553868 ATRNO75882 1429 aa21.37■■□□□ 1.01
SHMT2-208ENST00000553868 LRP5O75197 1615 aa21.37■■□□□ 1.01
SHMT2-208ENST00000553868 ANKRD30AQ9BXX3 1397 aa21.36■■□□□ 1.01
SHMT2-208ENST00000553868 ACIN1Q9UKV3 1341 aaKnown RBP21.36■■□□□ 1.01
SHMT2-208ENST00000553868 HDGFP51858 240 aaKnown RBP21.36■■□□□ 1.01
SHMT2-208ENST00000553868 ADGRL2O95490 1459 aa21.36■■□□□ 1.01
SHMT2-208ENST00000553868 DCCP43146 1447 aa21.36■■□□□ 1.01
SHMT2-208ENST00000553868 CHGAP10645 457 aaKnown RBP21.35■■□□□ 1.01
SHMT2-208ENST00000553868 PIK3R4Q99570 1358 aa21.35■■□□□ 1.01
SHMT2-208ENST00000553868 RAB3GAP2Q9H2M9 1393 aa21.35■■□□□ 1.01
SHMT2-208ENST00000553868 FNBP4Q8N3X1 1017 aaPredicted RBP21.34■■□□□ 1.01
SHMT2-208ENST00000553868 NAIPQ13075 1403 aa21.34■■□□□ 1.01
SHMT2-208ENST00000553868 TRPM2O94759 1503 aa21.33■■□□□ 1
SHMT2-208ENST00000553868 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.31■■□□□ 1
SHMT2-208ENST00000553868 CCER1Q8TC90 406 aaPredicted RBP21.3■■□□□ 1
SHMT2-208ENST00000553868 PSDA5PKW4 1024 aaPredicted RBP21.29■■□□□ 1
SHMT2-208ENST00000553868 BLMP54132 1417 aaPredicted RBP21.29■■□□□ 1
SHMT2-208ENST00000553868 XRN1Q8IZH2 1706 aaKnown RBP21.26■□□□□ 0.99
SHMT2-208ENST00000553868 BCL9LQ86UU0 1499 aa21.26■□□□□ 0.99
SHMT2-208ENST00000553868 PTCH1Q13635 1447 aa21.25■□□□□ 0.99
SHMT2-208ENST00000553868 UNC13BO14795 1591 aa21.24■□□□□ 0.99
SHMT2-208ENST00000553868 RPRD2Q5VT52 1461 aaKnown RBP21.24■□□□□ 0.99
SHMT2-208ENST00000553868 GJD4Q96KN9 370 aaPredicted RBP21.23■□□□□ 0.99
SHMT2-208ENST00000553868 NALCNQ8IZF0 1738 aa21.23■□□□□ 0.99
SHMT2-208ENST00000553868 SOS2Q07890 1332 aaPredicted RBP21.22■□□□□ 0.99
SHMT2-208ENST00000553868 ADGRL3Q9HAR2 1447 aa21.21■□□□□ 0.99
SHMT2-208ENST00000553868 ORAI2Q96SN7 254 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms