RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 NISCHQ9Y2I1 1504 aa34.94■■■■□ 3.18
SHMT2-208ENST00000553868 ABCC9O60706 1549 aa32.9■■■□□ 2.86
SHMT2-208ENST00000553868 DNAJC5BQ9UF47 199 aa31.86■■■□□ 2.69
SHMT2-208ENST00000553868 CCDC180Q9P1Z9 1646 aa31.71■■■□□ 2.67
SHMT2-208ENST00000553868 RB1CC1Q8TDY2 1594 aa30.72■■■□□ 2.51
SHMT2-208ENST00000553868 PABPN1Q86U42 306 aaKnown RBP eCLIP30.52■■■□□ 2.48
SHMT2-208ENST00000553868 NACADO15069 1562 aa30.24■■■□□ 2.43
SHMT2-208ENST00000553868 UNC13AQ9UPW8 1703 aa30.13■■■□□ 2.41
SHMT2-208ENST00000553868 DCAF8L2P0C7V8 631 aa30.07■■■□□ 2.4
SHMT2-208ENST00000553868 BICRAQ9NZM4 1560 aa29.96■■■□□ 2.39
SHMT2-208ENST00000553868 DNAJC5Q9H3Z4 198 aa29.88■■■□□ 2.37
SHMT2-208ENST00000553868 CECR2Q9BXF3 1484 aa29.69■■■□□ 2.34
SHMT2-208ENST00000553868 CC2D2AQ9P2K1 1620 aa29.62■■■□□ 2.33
SHMT2-208ENST00000553868 MYO15BQ96JP2 1530 aa29.4■■■□□ 2.3
SHMT2-208ENST00000553868 EIF4G1Q04637 1599 aaKnown RBP29.27■■■□□ 2.28
SHMT2-208ENST00000553868 SHROOM4Q9ULL8 1493 aa29.23■■■□□ 2.27
SHMT2-208ENST00000553868 SCRIBQ14160 1630 aa28.99■■■□□ 2.23
SHMT2-208ENST00000553868 ZCCHC6Q5VYS8 1495 aaKnown RBP28.72■■■□□ 2.19
SHMT2-208ENST00000553868 DCAF1Q9Y4B6 1507 aa28.69■■■□□ 2.18
SHMT2-208ENST00000553868 CUX2O14529 1486 aa28.63■■■□□ 2.17
SHMT2-208ENST00000553868 ERCC6Q03468 1493 aa28.41■■■□□ 2.14
SHMT2-208ENST00000553868 TRIM41Q8WV44 630 aa28.24■■■□□ 2.11
SHMT2-208ENST00000553868 NESP48681 1621 aa28■■■□□ 2.07
SHMT2-208ENST00000553868 NCAPD3P42695 1498 aa27.95■■■□□ 2.07
SHMT2-208ENST00000553868 THOC2Q8NI27 1593 aaKnown RBP27.83■■■□□ 2.05
SHMT2-208ENST00000553868 ATAD2BQ9ULI0 1458 aa27.78■■■□□ 2.04
SHMT2-208ENST00000553868 SMARCA2P51531 1590 aa27.66■■■□□ 2.02
SHMT2-208ENST00000553868 HMGXB3Q12766 1538 aa27.63■■■□□ 2.01
SHMT2-208ENST00000553868 KIF21AQ7Z4S6 1674 aa27.55■■■□□ 2
SHMT2-208ENST00000553868 SMARCA4P51532 1647 aa27.49■■□□□ 1.99
SHMT2-208ENST00000553868 LAMC3Q9Y6N6 1575 aa27.47■■□□□ 1.99
SHMT2-208ENST00000553868 BAZ1BQ9UIG0 1483 aaKnown RBP27.44■■□□□ 1.98
SHMT2-208ENST00000553868 PDS5BQ9NTI5 1447 aa27.35■■□□□ 1.97
SHMT2-208ENST00000553868 BAZ1AQ9NRL2 1556 aaPredicted RBP27.31■■□□□ 1.96
SHMT2-208ENST00000553868 MRC2Q9UBG0 1479 aa27.22■■□□□ 1.95
SHMT2-208ENST00000553868 OSCARQ8IYS5 282 aa27.21■■□□□ 1.95
SHMT2-208ENST00000553868 WDR62O43379 1518 aa27.18■■□□□ 1.94
SHMT2-208ENST00000553868 PEG3Q9GZU2 1588 aa27.15■■□□□ 1.94
SHMT2-208ENST00000553868 CADPSQ9ULU8 1353 aa27.09■■□□□ 1.93
SHMT2-208ENST00000553868 RIMBP3CA6NJZ7 1639 aa27.02■■□□□ 1.92
SHMT2-208ENST00000553868 RIMBP3BA6NNM3 1639 aa27.02■■□□□ 1.92
SHMT2-208ENST00000553868 RIMBP3Q9UFD9 1639 aa27.02■■□□□ 1.92
SHMT2-208ENST00000553868 MROH2BQ7Z745 1585 aa26.98■■□□□ 1.91
SHMT2-208ENST00000553868 CEP164Q9UPV0 1460 aa26.9■■□□□ 1.9
SHMT2-208ENST00000553868 ARHGEF11O15085 1522 aa26.81■■□□□ 1.88
SHMT2-208ENST00000553868 FANCD2Q9BXW9 1451 aa26.81■■□□□ 1.88
SHMT2-208ENST00000553868 TRHP20396 242 aaPredicted RBP26.76■■□□□ 1.87
SHMT2-208ENST00000553868 CYB5RLQ6IPT4 315 aa26.73■■□□□ 1.87
SHMT2-208ENST00000553868 AEBP2Q6ZN18 517 aaPredicted RBP26.69■■□□□ 1.86
SHMT2-208ENST00000553868 URB2Q14146 1524 aaKnown RBP26.69■■□□□ 1.86
SHMT2-208ENST00000553868 WIZO95785 1651 aa26.62■■□□□ 1.85
SHMT2-208ENST00000553868 ZNF608Q9ULD9 1512 aaPredicted RBP26.57■■□□□ 1.84
SHMT2-208ENST00000553868 CFTRP13569 1480 aa26.55■■□□□ 1.84
SHMT2-208ENST00000553868 ARAP1Q96P48 1450 aa26.5■■□□□ 1.83
SHMT2-208ENST00000553868 IFT140Q96RY7 1462 aa26.38■■□□□ 1.81
SHMT2-208ENST00000553868 CHD1O14646 1710 aa26.33■■□□□ 1.81
SHMT2-208ENST00000553868 EIF4G3O43432 1585 aaKnown RBP26.3■■□□□ 1.8
SHMT2-208ENST00000553868 FBLN2P98095 1184 aa26.23■■□□□ 1.79
SHMT2-208ENST00000553868 RSF1Q96T23 1441 aaPredicted RBP26.21■■□□□ 1.79
SHMT2-208ENST00000553868 TOPBP1Q92547 1522 aa26.19■■□□□ 1.78
SHMT2-208ENST00000553868 AQRO60306 1485 aaKnown RBP eCLIP26.18■■□□□ 1.786e-9■■■■□ 26.2
SHMT2-208ENST00000553868 PRDM2Q13029 1718 aa26.17■■□□□ 1.78
SHMT2-208ENST00000553868 TOP2AP11388 1531 aaKnown RBP26.12■■□□□ 1.77
SHMT2-208ENST00000553868 TARBP1Q13395 1621 aaKnown RBP26.03■■□□□ 1.76
SHMT2-208ENST00000553868 DNMBPQ6XZF7 1577 aa25.96■■□□□ 1.75
SHMT2-208ENST00000553868 CLASP1Q7Z460 1538 aa25.96■■□□□ 1.75
SHMT2-208ENST00000553868 ABCC8Q09428 1581 aa25.93■■□□□ 1.74
SHMT2-208ENST00000553868 CCDC88BA6NC98 1476 aa25.9■■□□□ 1.74
SHMT2-208ENST00000553868 TDRD9Q8NDG6 1382 aaKnown RBP25.87■■□□□ 1.73
SHMT2-208ENST00000553868 POLA1P09884 1462 aaPredicted RBP25.86■■□□□ 1.73
SHMT2-208ENST00000553868 SNAPC4Q5SXM2 1469 aa25.85■■□□□ 1.73
SHMT2-208ENST00000553868 RAD54L2Q9Y4B4 1467 aa25.85■■□□□ 1.73
SHMT2-208ENST00000553868 SYNJ1O43426 1573 aa25.81■■□□□ 1.72
SHMT2-208ENST00000553868 CHMP7Q8WUX9 453 aaPredicted RBP25.8■■□□□ 1.72
SHMT2-208ENST00000553868 GAPVD1Q14C86 1478 aa25.78■■□□□ 1.72
SHMT2-208ENST00000553868 ILDR1Q86SU0 546 aaPredicted RBP25.76■■□□□ 1.71
SHMT2-208ENST00000553868 SOGA1O94964 1423 aa25.71■■□□□ 1.71
SHMT2-208ENST00000553868 MAGI1Q96QZ7 1491 aaPredicted RBP25.65■■□□□ 1.7
SHMT2-208ENST00000553868 SYNJ2O15056 1496 aa25.61■■□□□ 1.69
SHMT2-208ENST00000553868 ERCC6L2Q5T890 1561 aa25.6■■□□□ 1.69
SHMT2-208ENST00000553868 GRIN2BQ13224 1484 aa25.58■■□□□ 1.69
SHMT2-208ENST00000553868 FGD5Q6ZNL6 1462 aa25.56■■□□□ 1.68
SHMT2-208ENST00000553868 WDR97A6NE52 1622 aa25.54■■□□□ 1.68
SHMT2-208ENST00000553868 SUPT5HO00267 1087 aaKnown RBP25.53■■□□□ 1.68
SHMT2-208ENST00000553868 KIF13AQ9H1H9 1805 aa25.51■■□□□ 1.67
SHMT2-208ENST00000553868 KDM4FA0A1W2PPD8 638 aa25.46■■□□□ 1.67
SHMT2-208ENST00000553868 PBRM1Q86U86 1689 aa25.44■■□□□ 1.66
SHMT2-208ENST00000553868 CUX1P39880 1505 aa25.39■■□□□ 1.66
SHMT2-208ENST00000553868 CEP170Q5SW79 1584 aa25.36■■□□□ 1.65
SHMT2-208ENST00000553868 FAM69CQ0P6D2 419 aa25.28■■□□□ 1.64
SHMT2-208ENST00000553868 GRIN2AQ12879 1464 aa25.27■■□□□ 1.64
SHMT2-208ENST00000553868 ABCA5Q8WWZ7 1642 aa25.23■■□□□ 1.63
SHMT2-208ENST00000553868 NUP160Q12769 1436 aa25.21■■□□□ 1.63
SHMT2-208ENST00000553868 SHROOM2Q13796 1616 aa25.21■■□□□ 1.63
SHMT2-208ENST00000553868 ABCC10Q5T3U5 1492 aa25.19■■□□□ 1.62
SHMT2-208ENST00000553868 KDM6BO15054 1643 aa25.17■■□□□ 1.62
SHMT2-208ENST00000553868 ABCA10Q8WWZ4 1543 aa25.16■■□□□ 1.62
SHMT2-208ENST00000553868 ADAMTS12P58397 1594 aa25.13■■□□□ 1.61
SHMT2-208ENST00000553868 DIP2BQ9P265 1576 aa25.12■■□□□ 1.61
SHMT2-208ENST00000553868 PRG4Q92954 1404 aaPredicted RBP25.09■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms