RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 LTKP29376 864 aa23.59■■□□□ 1.37
CHMP1A-204ENST00000547687 SENP3Q9H4L4 574 aaPredicted RBP23.57■■□□□ 1.36
CHMP1A-204ENST00000547687 TXNDC2Q86VQ3 553 aa23.56■■□□□ 1.36
CHMP1A-204ENST00000547687 MED14O60244 1454 aa23.56■■□□□ 1.36
CHMP1A-204ENST00000547687 ADGRB3O60242 1522 aa23.55■■□□□ 1.36
CHMP1A-204ENST00000547687 SLIT1O75093 1534 aa23.55■■□□□ 1.36
CHMP1A-204ENST00000547687 SCAF11Q99590 1463 aaKnown RBP23.55■■□□□ 1.36
CHMP1A-204ENST00000547687 ARHGAP23Q9P227 1491 aa23.55■■□□□ 1.36
CHMP1A-204ENST00000547687 KDM5AP29375 1690 aaKnown RBP23.54■■□□□ 1.36
CHMP1A-204ENST00000547687 TMEM2Q9UHN6 1383 aa23.53■■□□□ 1.36
CHMP1A-204ENST00000547687 CHGAP10645 457 aaKnown RBP23.52■■□□□ 1.36
CHMP1A-204ENST00000547687 SLC52A1Q9NWF4 448 aa23.52■■□□□ 1.36
CHMP1A-204ENST00000547687 SPHKAPQ2M3C7 1700 aa23.51■■□□□ 1.35
CHMP1A-204ENST00000547687 STRCP1A6NGW2 1772 aa23.51■■□□□ 1.35
CHMP1A-204ENST00000547687 TMEM131LA2VDJ0 1609 aa23.5■■□□□ 1.35
CHMP1A-204ENST00000547687 EID1Q9Y6B2 187 aa23.49■■□□□ 1.35
CHMP1A-204ENST00000547687 CENPBP07199 599 aaPredicted RBP23.48■■□□□ 1.35
CHMP1A-204ENST00000547687 NUTM2DQ5VT03 806 aaPredicted RBP23.46■■□□□ 1.35
CHMP1A-204ENST00000547687 L3MBTL2Q969R5 705 aa23.46■■□□□ 1.35
CHMP1A-204ENST00000547687 SLC26A8Q96RN1 970 aa23.42■■□□□ 1.34
CHMP1A-204ENST00000547687 RIMS2Q9UQ26 1411 aa23.41■■□□□ 1.34
CHMP1A-204ENST00000547687 PELP1Q8IZL8 1130 aaKnown RBP23.4■■□□□ 1.34
CHMP1A-204ENST00000547687 BCANQ96GW7 911 aa23.4■■□□□ 1.34
CHMP1A-204ENST00000547687 ZFYVE9O95405 1425 aa23.4■■□□□ 1.34
CHMP1A-204ENST00000547687 CLTCL1P53675 1640 aa23.4■■□□□ 1.34
CHMP1A-204ENST00000547687 CPS1P31327 1500 aa23.39■■□□□ 1.33
CHMP1A-204ENST00000547687 IQSEC2Q5JU85 1478 aa23.38■■□□□ 1.33
CHMP1A-204ENST00000547687 UBAP1LF5GYI3 381 aa23.36■■□□□ 1.33
CHMP1A-204ENST00000547687 YTHDC1Q96MU7 727 aaKnown RBP23.36■■□□□ 1.33
CHMP1A-204ENST00000547687 TRPM2O94759 1503 aa23.35■■□□□ 1.33
CHMP1A-204ENST00000547687 CCDC144AA2RUR9 1427 aa23.35■■□□□ 1.33
CHMP1A-204ENST00000547687 KIF1BO60333 1816 aa23.34■■□□□ 1.33
CHMP1A-204ENST00000547687 LRRC7Q96NW7 1537 aa23.33■■□□□ 1.32
CHMP1A-204ENST00000547687 XIRP1Q702N8 1843 aaKnown RBP23.32■■□□□ 1.32
CHMP1A-204ENST00000547687 ZNF326Q5BKZ1 582 aaKnown RBP23.32■■□□□ 1.32
CHMP1A-204ENST00000547687 HIRIP3Q9BW71 556 aaPredicted RBP23.32■■□□□ 1.32
CHMP1A-204ENST00000547687 SCAF1Q9H7N4 1312 aaKnown RBP23.32■■□□□ 1.32
CHMP1A-204ENST00000547687 PLEKHG1Q9ULL1 1385 aa23.3■■□□□ 1.32
CHMP1A-204ENST00000547687 RBM33Q96EV2 1170 aaKnown RBP23.3■■□□□ 1.32
CHMP1A-204ENST00000547687 NBPF8Q3BBV2 869 aa23.29■■□□□ 1.32
CHMP1A-204ENST00000547687 DDX10Q13206 875 aaKnown RBP23.28■■□□□ 1.32
CHMP1A-204ENST00000547687 HDGFP51858 240 aaKnown RBP23.27■■□□□ 1.32
CHMP1A-204ENST00000547687 PIP4K2BP78356 416 aa23.27■■□□□ 1.32
CHMP1A-204ENST00000547687 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.26■■□□□ 1.31
CHMP1A-204ENST00000547687 CHD2O14647 1828 aaKnown RBP23.25■■□□□ 1.31
CHMP1A-204ENST00000547687 ALKQ9UM73 1620 aa23.24■■□□□ 1.31
CHMP1A-204ENST00000547687 ADAMTS13Q76LX8 1427 aa23.23■■□□□ 1.31
CHMP1A-204ENST00000547687 KCNA6P17658 529 aa23.23■■□□□ 1.31
CHMP1A-204ENST00000547687 NEXMIFQ5QGS0 1516 aa23.23■■□□□ 1.31
CHMP1A-204ENST00000547687 RGL3Q3MIN7 710 aa23.22■■□□□ 1.31
CHMP1A-204ENST00000547687 NRXN3Q9Y4C0 1643 aa23.22■■□□□ 1.31
CHMP1A-204ENST00000547687 DCAF11Q8TEB1 546 aa23.21■■□□□ 1.31
CHMP1A-204ENST00000547687 KDM2AQ9Y2K7 1162 aa23.2■■□□□ 1.3
CHMP1A-204ENST00000547687 NWD1Q149M9 1564 aa23.2■■□□□ 1.3
CHMP1A-204ENST00000547687 TOM1O60784 492 aa23.2■■□□□ 1.3
CHMP1A-204ENST00000547687 TMEM94Q12767 1356 aa23.19■■□□□ 1.3
CHMP1A-204ENST00000547687 PROSER2Q86WR7 435 aaPredicted RBP23.19■■□□□ 1.3
CHMP1A-204ENST00000547687 TBX22Q9Y458 520 aa23.17■■□□□ 1.3
CHMP1A-204ENST00000547687 PPLO60437 1756 aa23.16■■□□□ 1.3
CHMP1A-204ENST00000547687 DIP2AQ14689 1571 aa23.15■■□□□ 1.3
CHMP1A-204ENST00000547687 SPATA31E1Q6ZUB1 1445 aa23.15■■□□□ 1.3
CHMP1A-204ENST00000547687 HSPA5P11021 654 aaKnown RBP23.15■■□□□ 1.3
CHMP1A-204ENST00000547687 SETBP1Q9Y6X0 1596 aa23.14■■□□□ 1.29
CHMP1A-204ENST00000547687 EIF4G2P78344 907 aaKnown RBP eCLIP23.14■■□□□ 1.29
CHMP1A-204ENST00000547687 PTPRUQ92729 1446 aa23.13■■□□□ 1.29
CHMP1A-204ENST00000547687 NKTRP30414 1462 aaKnown RBP23.13■■□□□ 1.29
CHMP1A-204ENST00000547687 METP08581 1390 aa23.1■■□□□ 1.29
CHMP1A-204ENST00000547687 HSPA1LP34931 641 aa23.1■■□□□ 1.29
CHMP1A-204ENST00000547687 AMOTL2Q9Y2J4 779 aa23.09■■□□□ 1.29
CHMP1A-204ENST00000547687 GTF3C3Q9Y5Q9 886 aa23.09■■□□□ 1.29
CHMP1A-204ENST00000547687 PRAG1Q86YV5 1406 aa23.07■■□□□ 1.28
CHMP1A-204ENST00000547687 RALGAPBQ86X10 1494 aa23.07■■□□□ 1.28
CHMP1A-204ENST00000547687 SETD1AO15047 1707 aaKnown RBP23.07■■□□□ 1.28
CHMP1A-204ENST00000547687 IFT172Q9UG01 1749 aa23.07■■□□□ 1.28
CHMP1A-204ENST00000547687 VGFO15240 615 aaPredicted RBP23.06■■□□□ 1.28
CHMP1A-204ENST00000547687 XRN1Q8IZH2 1706 aaKnown RBP23.05■■□□□ 1.28
CHMP1A-204ENST00000547687 PIK3R4Q99570 1358 aa23.05■■□□□ 1.28
CHMP1A-204ENST00000547687 ANP32CO43423 234 aa23.04■■□□□ 1.28
CHMP1A-204ENST00000547687 C14orf37Q86TY3 774 aa23.04■■□□□ 1.28
CHMP1A-204ENST00000547687 RPGRIP1LQ68CZ1 1315 aa23.04■■□□□ 1.28
CHMP1A-204ENST00000547687 ADGRF5Q8IZF2 1346 aa23.04■■□□□ 1.28
CHMP1A-204ENST00000547687 MSH6P52701 1360 aa23.03■■□□□ 1.28
CHMP1A-204ENST00000547687 TRPM1Q7Z4N2 1603 aa23.02■■□□□ 1.28
CHMP1A-204ENST00000547687 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.01■■□□□ 1.27
CHMP1A-204ENST00000547687 WASHC2AQ641Q2 1341 aa23.01■■□□□ 1.27
CHMP1A-204ENST00000547687 CARD11Q9BXL7 1154 aa23■■□□□ 1.27
CHMP1A-204ENST00000547687 ROBO1Q9Y6N7 1651 aa23■■□□□ 1.27
CHMP1A-204ENST00000547687 ROCK2O75116 1388 aaKnown RBP22.99■■□□□ 1.27
CHMP1A-204ENST00000547687 USP47Q96K76 1375 aa22.99■■□□□ 1.27
CHMP1A-204ENST00000547687 CCER2I3L3R5 266 aa22.97■■□□□ 1.27
CHMP1A-204ENST00000547687 NBPF1Q3BBV0 1214 aa22.96■■□□□ 1.27
CHMP1A-204ENST00000547687 STAC3Q96MF2 364 aa22.96■■□□□ 1.27
CHMP1A-204ENST00000547687 SLAIN2Q9P270 581 aa22.94■■□□□ 1.26
CHMP1A-204ENST00000547687 NALCNQ8IZF0 1738 aa22.93■■□□□ 1.26
CHMP1A-204ENST00000547687 MYT1Q01538 1121 aa22.93■■□□□ 1.26
CHMP1A-204ENST00000547687 DISP3Q9P2K9 1392 aa22.92■■□□□ 1.26
CHMP1A-204ENST00000547687 C11orf95C9JLR9 678 aaPredicted RBP22.92■■□□□ 1.26
CHMP1A-204ENST00000547687 C19orf44Q9H6X5 657 aa22.92■■□□□ 1.26
CHMP1A-204ENST00000547687 GPRASP1Q5JY77 1395 aa22.92■■□□□ 1.26
CHMP1A-204ENST00000547687 TMEM132EQ6IEE7 984 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms