RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 AMER1Q5JTC6 1135 aaPredicted RBP15.78■□□□□ 0.12
PTCH1-212ENST00000546744 SMC4Q9NTJ3 1288 aa15.78■□□□□ 0.12
PTCH1-212ENST00000546744 RAPGEF6Q8TEU7 1601 aa15.78■□□□□ 0.12
PTCH1-212ENST00000546744 CRBNQ96SW2 442 aa15.78■□□□□ 0.12
PTCH1-212ENST00000546744 UBE2Q2Q8WVN8 375 aa15.77■□□□□ 0.12
PTCH1-212ENST00000546744 MIA2Q96PC5 1412 aa15.77■□□□□ 0.12
PTCH1-212ENST00000546744 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.77■□□□□ 0.11
PTCH1-212ENST00000546744 NUP153P49790 1475 aaKnown RBP15.76■□□□□ 0.11
PTCH1-212ENST00000546744 REC8O95072 547 aa15.76■□□□□ 0.11
PTCH1-212ENST00000546744 ARGLU1Q9NWB6 273 aaPredicted RBP15.76■□□□□ 0.11
PTCH1-212ENST00000546744 LMOD3Q0VAK6 560 aa15.75■□□□□ 0.11
PTCH1-212ENST00000546744 NASPP49321 788 aaPredicted RBP15.75■□□□□ 0.11
PTCH1-212ENST00000546744 BRD4O60885 1362 aaPredicted RBP15.74■□□□□ 0.11
PTCH1-212ENST00000546744 CALRP27797 417 aaKnown RBP15.74■□□□□ 0.11
PTCH1-212ENST00000546744 GOLGA6L19H0YKK7 550 aa15.74■□□□□ 0.11
PTCH1-212ENST00000546744 MBD3O95983 291 aa15.74■□□□□ 0.11
PTCH1-212ENST00000546744 ZKSCAN2Q63HK3 967 aa15.74■□□□□ 0.11
PTCH1-212ENST00000546744 SLC4A3P48751 1232 aa15.73■□□□□ 0.11
PTCH1-212ENST00000546744 GPATCH3Q96I76 525 aa15.73■□□□□ 0.11
PTCH1-212ENST00000546744 BACH2Q9BYV9 841 aa15.73■□□□□ 0.11
PTCH1-212ENST00000546744 CWC15Q9P013 229 aaKnown RBP15.73■□□□□ 0.11
PTCH1-212ENST00000546744 IL27Q8NEV9 243 aa15.73■□□□□ 0.11
PTCH1-212ENST00000546744 CCDC7Q96M83 1385 aa15.72■□□□□ 0.11
PTCH1-212ENST00000546744 RSPH4AQ5TD94 716 aa15.72■□□□□ 0.11
PTCH1-212ENST00000546744 DDX19BQ9UMR2 479 aa15.72■□□□□ 0.11
PTCH1-212ENST00000546744 U2AF1L5P0DN76 240 aaPredicted RBP15.72■□□□□ 0.11
PTCH1-212ENST00000546744 U2AF1Q01081 240 aaKnown RBP eCLIP15.72■□□□□ 0.11
PTCH1-212ENST00000546744 BRPF3Q9ULD4 1205 aa15.72■□□□□ 0.11
PTCH1-212ENST00000546744 PODXL2Q9NZ53 605 aa15.71■□□□□ 0.11
PTCH1-212ENST00000546744 POGKQ9P215 609 aa15.71■□□□□ 0.11
PTCH1-212ENST00000546744 TRAK2O60296 914 aa15.71■□□□□ 0.11
PTCH1-212ENST00000546744 DHX8Q14562 1220 aaKnown RBP15.71■□□□□ 0.1
PTCH1-212ENST00000546744 ACBD3Q9H3P7 528 aa15.71■□□□□ 0.1
PTCH1-212ENST00000546744 LETM1O95202 739 aaPredicted RBP15.7■□□□□ 0.1
PTCH1-212ENST00000546744 FOXD1Q16676 465 aa15.7■□□□□ 0.1
PTCH1-212ENST00000546744 PTPN23Q9H3S7 1636 aa15.7■□□□□ 0.1
PTCH1-212ENST00000546744 NINLQ9Y2I6 1382 aa15.69■□□□□ 0.1
PTCH1-212ENST00000546744 CIZ1Q9ULV3 898 aaPredicted RBP15.69■□□□□ 0.1
PTCH1-212ENST00000546744 CYB5RLQ6IPT4 315 aa15.69■□□□□ 0.1
PTCH1-212ENST00000546744 NUP155O75694 1391 aa15.69■□□□□ 0.1
PTCH1-212ENST00000546744 WASHC2AQ641Q2 1341 aa15.68■□□□□ 0.1
PTCH1-212ENST00000546744 WASHC2CQ9Y4E1 1318 aa15.68■□□□□ 0.1
PTCH1-212ENST00000546744 GNL2Q13823 731 aaKnown RBP15.68■□□□□ 0.1
PTCH1-212ENST00000546744 USP47Q96K76 1375 aa15.68■□□□□ 0.1
PTCH1-212ENST00000546744 SMG6Q86US8 1419 aaKnown RBP15.68■□□□□ 0.1
PTCH1-212ENST00000546744 BECN2A8MW95 431 aa15.68■□□□□ 0.1
PTCH1-212ENST00000546744 CCDC70Q6NSX1 233 aa15.68■□□□□ 0.1
PTCH1-212ENST00000546744 C22orf23Q9BZE7 217 aa15.68■□□□□ 0.1
PTCH1-212ENST00000546744 HDGFL2Q7Z4V5 671 aaPredicted RBP15.67■□□□□ 0.1
PTCH1-212ENST00000546744 ESPNB1AK53 854 aa15.67■□□□□ 0.1
PTCH1-212ENST00000546744 R3HCC1Q9Y3T6 440 aaKnown RBP15.67■□□□□ 0.1
PTCH1-212ENST00000546744 ATP10BO94823 1461 aa15.67■□□□□ 0.1
PTCH1-212ENST00000546744 NAP1L2Q9ULW6 460 aaPredicted RBP15.67■□□□□ 0.1
PTCH1-212ENST00000546744 PDCL2Q8N4E4 241 aa15.66■□□□□ 0.1
PTCH1-212ENST00000546744 HFM1A2PYH4 1435 aa15.66■□□□□ 0.1
PTCH1-212ENST00000546744 CAVIN1Q6NZI2 390 aaKnown RBP15.66■□□□□ 0.1
PTCH1-212ENST00000546744 STAC3Q96MF2 364 aa15.66■□□□□ 0.1
PTCH1-212ENST00000546744 RTF1Q92541 710 aaKnown RBP15.65■□□□□ 0.1
PTCH1-212ENST00000546744 ARHGEF11O15085 1522 aa15.65■□□□□ 0.1
PTCH1-212ENST00000546744 NOC3LQ8WTT2 800 aaKnown RBP15.65■□□□□ 0.1
PTCH1-212ENST00000546744 CHD1O14646 1710 aa15.65■□□□□ 0.1
PTCH1-212ENST00000546744 PAK3O75914 559 aaPredicted RBP15.65■□□□□ 0.1
PTCH1-212ENST00000546744 ROCK1Q13464 1354 aa15.64■□□□□ 0.09
PTCH1-212ENST00000546744 KIF14Q15058 1648 aa15.64■□□□□ 0.09
PTCH1-212ENST00000546744 ARHGAP5Q13017 1502 aa15.64■□□□□ 0.09
PTCH1-212ENST00000546744 CLUAP1Q96AJ1 413 aa15.64■□□□□ 0.09
PTCH1-212ENST00000546744 STK31Q9BXU1 1019 aa15.64■□□□□ 0.09
PTCH1-212ENST00000546744 PDCL3Q9H2J4 239 aa15.64■□□□□ 0.09
PTCH1-212ENST00000546744 DAPK1P53355 1430 aa15.63■□□□□ 0.09
PTCH1-212ENST00000546744 MCM2P49736 904 aa15.63■□□□□ 0.09
PTCH1-212ENST00000546744 FRAT2O75474 233 aaPredicted RBP15.63■□□□□ 0.09
PTCH1-212ENST00000546744 TPM1P09493 284 aa15.63■□□□□ 0.09
PTCH1-212ENST00000546744 TSPYL1Q9H0U9 437 aa15.63■□□□□ 0.09
PTCH1-212ENST00000546744 SPAG9O60271 1321 aaKnown RBP15.62■□□□□ 0.09
PTCH1-212ENST00000546744 NAIPQ13075 1403 aa15.61■□□□□ 0.09
PTCH1-212ENST00000546744 PDE3AQ14432 1141 aa15.61■□□□□ 0.09
PTCH1-212ENST00000546744 ZBTB7CA1YPR0 619 aa15.61■□□□□ 0.09
PTCH1-212ENST00000546744 GRPEL1Q9HAV7 217 aa15.6■□□□□ 0.09
PTCH1-212ENST00000546744 MAGI3Q5TCQ9 1506 aa15.6■□□□□ 0.09
PTCH1-212ENST00000546744 CAMSAP2Q08AD1 1489 aa15.6■□□□□ 0.09
PTCH1-212ENST00000546744 INTS3Q68E01 1043 aaKnown RBP15.6■□□□□ 0.09
PTCH1-212ENST00000546744 TRIM6-TRIM34B2RNG4 842 aa15.59■□□□□ 0.09
PTCH1-212ENST00000546744 ST20-MTHFSA0A0A6YYL1 179 aa15.59■□□□□ 0.09
PTCH1-212ENST00000546744 PLIN1O60240 522 aa15.59■□□□□ 0.09
PTCH1-212ENST00000546744 DZIP1LQ8IYY4 767 aaKnown RBP15.59■□□□□ 0.09
PTCH1-212ENST00000546744 TERF2IPQ9NYB0 399 aa15.59■□□□□ 0.09
PTCH1-212ENST00000546744 CCP110O43303 1012 aa15.59■□□□□ 0.09
PTCH1-212ENST00000546744 RUFY2Q8WXA3 655 aa15.59■□□□□ 0.09
PTCH1-212ENST00000546744 FOXD4L1Q9NU39 408 aa15.59■□□□□ 0.09
PTCH1-212ENST00000546744 COG6Q9Y2V7 657 aa15.59■□□□□ 0.09
PTCH1-212ENST00000546744 GPATCH8Q9UKJ3 1502 aaKnown RBP15.59■□□□□ 0.09
PTCH1-212ENST00000546744 ZSCAN30Q86W11 494 aa15.59■□□□□ 0.09
PTCH1-212ENST00000546744 CWC22Q9HCG8 908 aaKnown RBP15.58■□□□□ 0.09
PTCH1-212ENST00000546744 HSP90B2PQ58FF3 399 aa15.58■□□□□ 0.08
PTCH1-212ENST00000546744 SRPK2P78362 688 aaKnown RBP15.58■□□□□ 0.08
PTCH1-212ENST00000546744 SF3A1Q15459 793 aaKnown RBP15.58■□□□□ 0.08
PTCH1-212ENST00000546744 ANKRD45Q5TZF3 282 aa15.57■□□□□ 0.08
PTCH1-212ENST00000546744 API5Q9BZZ5 524 aaKnown RBP15.57■□□□□ 0.08
PTCH1-212ENST00000546744 KIF7Q2M1P5 1343 aa15.57■□□□□ 0.08
PTCH1-212ENST00000546744 ABCC5O15440 1437 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms