RNA–Protein interactions for RNA: ENST00000545998.1

HMGA2-211, Transcript of high mobility group AT-hook 2, humanhuman

TSL 1 (best)

Gene HMGA2, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-211ENST00000545998 RIMS2Q9UQ26 1411 aa30.04■■■□□ 2.4
HMGA2-211ENST00000545998 EID1Q9Y6B2 187 aa30.04■■■□□ 2.4
HMGA2-211ENST00000545998 SPATA31E1Q6ZUB1 1445 aa30.02■■■□□ 2.4
HMGA2-211ENST00000545998 NPHP4O75161 1426 aaPredicted RBP30■■■□□ 2.39
HMGA2-211ENST00000545998 ZNF326Q5BKZ1 582 aaKnown RBP30■■■□□ 2.39
HMGA2-211ENST00000545998 IQGAP1P46940 1657 aa30■■■□□ 2.39
HMGA2-211ENST00000545998 NEXMIFQ5QGS0 1516 aa29.98■■■□□ 2.39
HMGA2-211ENST00000545998 HDGFP51858 240 aaKnown RBP29.98■■■□□ 2.39
HMGA2-211ENST00000545998 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.97■■■□□ 2.39
HMGA2-211ENST00000545998 PPLO60437 1756 aa29.94■■■□□ 2.38
HMGA2-211ENST00000545998 RPGRIP1LQ68CZ1 1315 aa29.93■■■□□ 2.38
HMGA2-211ENST00000545998 NUTM2DQ5VT03 806 aaPredicted RBP29.93■■■□□ 2.38
HMGA2-211ENST00000545998 PPP1R15AO75807 674 aaPredicted RBP29.92■■■□□ 2.38
HMGA2-211ENST00000545998 PLEKHG1Q9ULL1 1385 aa29.91■■■□□ 2.38
HMGA2-211ENST00000545998 RGL3Q3MIN7 710 aa29.91■■■□□ 2.38
HMGA2-211ENST00000545998 IFT172Q9UG01 1749 aa29.91■■■□□ 2.38
HMGA2-211ENST00000545998 VGFO15240 615 aaPredicted RBP29.83■■■□□ 2.37
HMGA2-211ENST00000545998 NRXN3Q9Y4C0 1643 aa29.82■■■□□ 2.36
HMGA2-211ENST00000545998 SETBP1Q9Y6X0 1596 aa29.82■■■□□ 2.36
HMGA2-211ENST00000545998 SENP3Q9H4L4 574 aaPredicted RBP29.81■■■□□ 2.36
HMGA2-211ENST00000545998 BCANQ96GW7 911 aa29.81■■■□□ 2.36
HMGA2-211ENST00000545998 SIN3AQ96ST3 1273 aa29.81■■■□□ 2.36
HMGA2-211ENST00000545998 SLC26A8Q96RN1 970 aa29.8■■■□□ 2.36
HMGA2-211ENST00000545998 ADAMTS13Q76LX8 1427 aa29.8■■■□□ 2.36
HMGA2-211ENST00000545998 DIP2AQ14689 1571 aa29.78■■■□□ 2.36
HMGA2-211ENST00000545998 ZNF335Q9H4Z2 1342 aaPredicted RBP29.77■■■□□ 2.36
HMGA2-211ENST00000545998 ADGRF5Q8IZF2 1346 aa29.76■■■□□ 2.35
HMGA2-211ENST00000545998 MYOM2P54296 1465 aa29.75■■■□□ 2.35
HMGA2-211ENST00000545998 TBX22Q9Y458 520 aa29.75■■■□□ 2.35
HMGA2-211ENST00000545998 LTBP4Q8N2S1 1624 aa29.74■■■□□ 2.35
HMGA2-211ENST00000545998 STRCP1A6NGW2 1772 aa29.73■■■□□ 2.35
HMGA2-211ENST00000545998 NEUROD1Q13562 356 aa29.73■■■□□ 2.35
HMGA2-211ENST00000545998 NRXN1Q9ULB1 1477 aa29.72■■■□□ 2.35
HMGA2-211ENST00000545998 SETD1AO15047 1707 aaKnown RBP29.7■■■□□ 2.35
HMGA2-211ENST00000545998 DCAF11Q8TEB1 546 aa29.7■■■□□ 2.35
HMGA2-211ENST00000545998 PIK3C2GO75747 1445 aa29.7■■■□□ 2.34
HMGA2-211ENST00000545998 CHD2O14647 1828 aaKnown RBP29.69■■■□□ 2.34
HMGA2-211ENST00000545998 ALKQ9UM73 1620 aa29.69■■■□□ 2.34
HMGA2-211ENST00000545998 STAC3Q96MF2 364 aa29.67■■■□□ 2.34
HMGA2-211ENST00000545998 CLSPNQ9HAW4 1339 aa29.66■■■□□ 2.34
HMGA2-211ENST00000545998 KDM2AQ9Y2K7 1162 aa29.65■■■□□ 2.34
HMGA2-211ENST00000545998 PIK3R4Q99570 1358 aa29.65■■■□□ 2.34
HMGA2-211ENST00000545998 NWD1Q149M9 1564 aa29.65■■■□□ 2.34
HMGA2-211ENST00000545998 CPS1P31327 1500 aa29.64■■■□□ 2.34
HMGA2-211ENST00000545998 KCNA6P17658 529 aa29.64■■■□□ 2.33
HMGA2-211ENST00000545998 METP08581 1390 aa29.64■■■□□ 2.33
HMGA2-211ENST00000545998 L3MBTL2Q969R5 705 aa29.63■■■□□ 2.33
HMGA2-211ENST00000545998 CCER1Q8TC90 406 aaPredicted RBP29.6■■■□□ 2.33
HMGA2-211ENST00000545998 PTPRUQ92729 1446 aa29.6■■■□□ 2.33
HMGA2-211ENST00000545998 LAMC1P11047 1609 aa29.59■■■□□ 2.33
HMGA2-211ENST00000545998 C14orf93Q9H972 538 aaKnown RBP29.57■■■□□ 2.32
HMGA2-211ENST00000545998 NKTRP30414 1462 aaKnown RBP29.56■■■□□ 2.32
HMGA2-211ENST00000545998 XRN1Q8IZH2 1706 aaKnown RBP29.56■■■□□ 2.32
HMGA2-211ENST00000545998 CERKQ8TCT0 537 aa29.56■■■□□ 2.32
HMGA2-211ENST00000545998 LRRC7Q96NW7 1537 aa29.55■■■□□ 2.32
HMGA2-211ENST00000545998 TONSLQ96HA7 1378 aa29.55■■■□□ 2.32
HMGA2-211ENST00000545998 ASXL1Q8IXJ9 1541 aa29.54■■■□□ 2.32
HMGA2-211ENST00000545998 CFAP70Q5T0N1 1121 aa29.54■■■□□ 2.32
HMGA2-211ENST00000545998 AMOTL2Q9Y2J4 779 aa29.54■■■□□ 2.32
HMGA2-211ENST00000545998 PRAG1Q86YV5 1406 aa29.54■■■□□ 2.32
HMGA2-211ENST00000545998 XIRP1Q702N8 1843 aaKnown RBP29.51■■■□□ 2.31
HMGA2-211ENST00000545998 IQSEC2Q5JU85 1478 aa29.49■■■□□ 2.31
HMGA2-211ENST00000545998 KIAA1210Q9ULL0 1709 aa29.49■■■□□ 2.31
HMGA2-211ENST00000545998 TMEM132EQ6IEE7 984 aa29.48■■■□□ 2.31
HMGA2-211ENST00000545998 ADGRB1O14514 1584 aa29.47■■■□□ 2.31
HMGA2-211ENST00000545998 PROSER2Q86WR7 435 aaPredicted RBP29.47■■■□□ 2.31
HMGA2-211ENST00000545998 LRPPRCP42704 1394 aaKnown RBP29.45■■■□□ 2.3
HMGA2-211ENST00000545998 TMEM94Q12767 1356 aa29.45■■■□□ 2.3
HMGA2-211ENST00000545998 KNDC1Q76NI1 1749 aa29.44■■■□□ 2.3
HMGA2-211ENST00000545998 PTCH1Q13635 1447 aa29.44■■■□□ 2.3
HMGA2-211ENST00000545998 YTHDC2Q9H6S0 1430 aaKnown RBP29.44■■■□□ 2.3
HMGA2-211ENST00000545998 RBM33Q96EV2 1170 aaKnown RBP29.42■■■□□ 2.3
HMGA2-211ENST00000545998 TECPR2O15040 1411 aa29.41■■■□□ 2.3
HMGA2-211ENST00000545998 ABCC11Q96J66 1382 aa29.41■■■□□ 2.3
HMGA2-211ENST00000545998 TIMELESSQ9UNS1 1208 aa29.4■■■□□ 2.3
HMGA2-211ENST00000545998 TRPM1Q7Z4N2 1603 aa29.4■■■□□ 2.3
HMGA2-211ENST00000545998 ROBO2Q9HCK4 1378 aa29.4■■■□□ 2.3
HMGA2-211ENST00000545998 STK26Q9P289 416 aa29.39■■■□□ 2.3
HMGA2-211ENST00000545998 NCOA3Q9Y6Q9 1424 aa29.39■■■□□ 2.29
HMGA2-211ENST00000545998 NBPF8Q3BBV2 869 aa29.38■■■□□ 2.29
HMGA2-211ENST00000545998 NBPF1Q3BBV0 1214 aa29.35■■■□□ 2.29
HMGA2-211ENST00000545998 DLC1Q96QB1 1528 aa29.33■■■□□ 2.29
HMGA2-211ENST00000545998 SIRT1Q96EB6 747 aa29.31■■■□□ 2.28
HMGA2-211ENST00000545998 FAM135BQ49AJ0 1406 aa29.31■■■□□ 2.28
HMGA2-211ENST00000545998 NALCNQ8IZF0 1738 aa29.29■■■□□ 2.28
HMGA2-211ENST00000545998 TRAK1Q9UPV9 953 aa29.29■■■□□ 2.28
HMGA2-211ENST00000545998 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.28■■■□□ 2.28
HMGA2-211ENST00000545998 MSH6P52701 1360 aa29.28■■■□□ 2.28
HMGA2-211ENST00000545998 WAPLQ7Z5K2 1190 aa29.28■■■□□ 2.28
HMGA2-211ENST00000545998 C14orf37Q86TY3 774 aa29.27■■■□□ 2.28
HMGA2-211ENST00000545998 ARHGEF28Q8N1W1 1705 aaKnown RBP29.27■■■□□ 2.28
HMGA2-211ENST00000545998 RALGAPBQ86X10 1494 aa29.27■■■□□ 2.28
HMGA2-211ENST00000545998 ADGRL3Q9HAR2 1447 aa29.27■■■□□ 2.28
HMGA2-211ENST00000545998 PLEKHH1Q9ULM0 1364 aa29.27■■■□□ 2.28
HMGA2-211ENST00000545998 ROCK2O75116 1388 aaKnown RBP29.26■■■□□ 2.27
HMGA2-211ENST00000545998 C19orf44Q9H6X5 657 aa29.26■■■□□ 2.27
HMGA2-211ENST00000545998 UBAP1LF5GYI3 381 aa29.25■■■□□ 2.27
HMGA2-211ENST00000545998 GPRASP1Q5JY77 1395 aa29.25■■■□□ 2.27
HMGA2-211ENST00000545998 PRAM1Q96QH2 718 aa29.23■■■□□ 2.27
HMGA2-211ENST00000545998 TOM1O60784 492 aa29.22■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms