RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 NPATQ14207 1427 aa6.93□□□□□ -1.3
SNHG1-220ENST00000544550 AGLP35573 1532 aa6.93□□□□□ -1.3
SNHG1-220ENST00000544550 HSPA1LP34931 641 aa6.93□□□□□ -1.3
SNHG1-220ENST00000544550 EMP3P54852 163 aa6.93□□□□□ -1.3
SNHG1-220ENST00000544550 PDAP1Q13442 181 aaKnown RBP6.93□□□□□ -1.3
SNHG1-220ENST00000544550 MARVELD3Q96A59 401 aa6.93□□□□□ -1.3
SNHG1-220ENST00000544550 PLA2R1Q13018 1463 aa6.92□□□□□ -1.3
SNHG1-220ENST00000544550 CAMSAP1Q5T5Y3 1602 aa6.92□□□□□ -1.3
SNHG1-220ENST00000544550 KDM5CP41229 1560 aa6.91□□□□□ -1.3
SNHG1-220ENST00000544550 PIP4K2BP78356 416 aa6.91□□□□□ -1.3
SNHG1-220ENST00000544550 OCEL1Q9H607 264 aa6.91□□□□□ -1.3
SNHG1-220ENST00000544550 NCKAP5LQ9HCH0 1330 aa6.91□□□□□ -1.3
SNHG1-220ENST00000544550 SETD1BQ9UPS6 1966 aaKnown RBP6.91□□□□□ -1.3
SNHG1-220ENST00000544550 C3P01024 1663 aa6.9□□□□□ -1.3
SNHG1-220ENST00000544550 PSEN1P49768 467 aa6.9□□□□□ -1.3
SNHG1-220ENST00000544550 IRX5P78411 483 aaPredicted RBP6.9□□□□□ -1.3
SNHG1-220ENST00000544550 AFAP1Q8N556 730 aa6.9□□□□□ -1.3
SNHG1-220ENST00000544550 TMEM106CQ9BVX2 250 aa6.9□□□□□ -1.3
SNHG1-220ENST00000544550 RYDENQ9NUL5 291 aaKnown RBP6.9□□□□□ -1.3
SNHG1-220ENST00000544550 CDK11AQ9UQ88 783 aaPredicted RBP6.9□□□□□ -1.3
SNHG1-220ENST00000544550 MLH3Q9UHC1 1453 aa6.9□□□□□ -1.31
SNHG1-220ENST00000544550 DIP2CQ9Y2E4 1556 aa6.9□□□□□ -1.31
SNHG1-220ENST00000544550 IFNL1Q8IU54 200 aa6.89□□□□□ -1.31
SNHG1-220ENST00000544550 PTPRKQ15262 1439 aa6.89□□□□□ -1.31
SNHG1-220ENST00000544550 TCOF1Q13428 1488 aaKnown RBP6.89□□□□□ -1.31
SNHG1-220ENST00000544550 CPS1P31327 1500 aa6.89□□□□□ -1.31
SNHG1-220ENST00000544550 ZMYM3Q14202 1370 aa6.88□□□□□ -1.31
SNHG1-220ENST00000544550 BCANQ96GW7 911 aa6.88□□□□□ -1.31
SNHG1-220ENST00000544550 ARHGAP5Q13017 1502 aa6.87□□□□□ -1.31
SNHG1-220ENST00000544550 HS3ST6Q96QI5 342 aa6.86□□□□□ -1.31
SNHG1-220ENST00000544550 KRTAP3-3Q9BYR6 98 aa6.86□□□□□ -1.31
SNHG1-220ENST00000544550 KRTAP3-2Q9BYR7 98 aa6.86□□□□□ -1.31
SNHG1-220ENST00000544550 CDK13Q14004 1512 aaKnown RBP6.86□□□□□ -1.31
SNHG1-220ENST00000544550 CLIP1P30622 1438 aa6.85□□□□□ -1.31
SNHG1-220ENST00000544550 MYO5CQ9NQX4 1742 aa6.85□□□□□ -1.31
SNHG1-220ENST00000544550 MROH2AA6NES4 1674 aa6.85□□□□□ -1.31
SNHG1-220ENST00000544550 RANGAP1P46060 587 aaPredicted RBP6.85□□□□□ -1.31
SNHG1-220ENST00000544550 C3orf67Q6ZVT6 689 aa6.85□□□□□ -1.31
SNHG1-220ENST00000544550 KIF14Q15058 1648 aa6.85□□□□□ -1.31
SNHG1-220ENST00000544550 ABCA6Q8N139 1617 aa6.85□□□□□ -1.31
SNHG1-220ENST00000544550 CEP170BQ9Y4F5 1589 aaPredicted RBP6.85□□□□□ -1.31
SNHG1-220ENST00000544550 ZNF142P52746 1687 aaPredicted RBP6.84□□□□□ -1.31
SNHG1-220ENST00000544550 SHANK2Q9UPX8 1470 aa6.84□□□□□ -1.31
SNHG1-220ENST00000544550 TROQ12816 1431 aaPredicted RBP6.84□□□□□ -1.32
SNHG1-220ENST00000544550 MYO3AQ8NEV4 1616 aa6.83□□□□□ -1.32
SNHG1-220ENST00000544550 FAM205CA6NFA0 338 aa6.83□□□□□ -1.32
SNHG1-220ENST00000544550 MFRPQ9BY79 579 aa6.83□□□□□ -1.32
SNHG1-220ENST00000544550 FMN1Q68DA7 1419 aa6.83□□□□□ -1.32
SNHG1-220ENST00000544550 A2ML1A8K2U0 1454 aa6.82□□□□□ -1.32
SNHG1-220ENST00000544550 RNF166Q96A37 237 aaPredicted RBP6.82□□□□□ -1.32
SNHG1-220ENST00000544550 L3MBTL3Q96JM7 780 aaPredicted RBP6.82□□□□□ -1.32
SNHG1-220ENST00000544550 ATP1B4Q9UN42 357 aaPredicted RBP6.82□□□□□ -1.32
SNHG1-220ENST00000544550 ABCC1P33527 1531 aa6.81□□□□□ -1.32
SNHG1-220ENST00000544550 EEA1Q15075 1411 aa6.8□□□□□ -1.32
SNHG1-220ENST00000544550 ANKLE2Q86XL3 938 aa6.8□□□□□ -1.32
SNHG1-220ENST00000544550 EFCAB3Q8N7B9 438 aa6.8□□□□□ -1.32
SNHG1-220ENST00000544550 CABP2Q9NPB3 220 aa6.8□□□□□ -1.32
SNHG1-220ENST00000544550 RGS17Q9UGC6 210 aaPredicted RBP6.8□□□□□ -1.32
SNHG1-220ENST00000544550 SPAG9O60271 1321 aaKnown RBP6.79□□□□□ -1.32
SNHG1-220ENST00000544550 SOX12O15370 315 aa6.79□□□□□ -1.32
SNHG1-220ENST00000544550 THEMISQ8N1K5 641 aaPredicted RBP6.79□□□□□ -1.32
SNHG1-220ENST00000544550 FBXO22Q8NEZ5 403 aa6.79□□□□□ -1.32
SNHG1-220ENST00000544550 SUPT6HQ7KZ85 1726 aaKnown RBP6.79□□□□□ -1.32
SNHG1-220ENST00000544550 KIDINS220Q9ULH0 1771 aa6.78□□□□□ -1.32
SNHG1-220ENST00000544550 PTGER2P43116 358 aa6.78□□□□□ -1.32
SNHG1-220ENST00000544550 GGT6Q6P531 493 aa6.78□□□□□ -1.32
SNHG1-220ENST00000544550 DNMT1P26358 1616 aaKnown RBP6.78□□□□□ -1.32
SNHG1-220ENST00000544550 A2MP01023 1474 aa6.78□□□□□ -1.32
SNHG1-220ENST00000544550 VWDEQ8N2E2 1590 aa6.78□□□□□ -1.32
SNHG1-220ENST00000544550 ITSN2Q9NZM3 1697 aa6.77□□□□□ -1.32
SNHG1-220ENST00000544550 PREX2Q70Z35 1606 aa6.77□□□□□ -1.33
SNHG1-220ENST00000544550 RNF17Q9BXT8 1623 aaKnown RBP6.77□□□□□ -1.33
SNHG1-220ENST00000544550 NLRP6P59044 892 aa6.77□□□□□ -1.33
SNHG1-220ENST00000544550 TNRQ92752 1358 aa6.77□□□□□ -1.33
SNHG1-220ENST00000544550 MED14O60244 1454 aa6.77□□□□□ -1.33
SNHG1-220ENST00000544550 PLXNC1O60486 1568 aa6.77□□□□□ -1.33
SNHG1-220ENST00000544550 SAMD9LQ8IVG5 1584 aa6.77□□□□□ -1.33
SNHG1-220ENST00000544550 NEURL4Q96JN8 1562 aa6.77□□□□□ -1.33
SNHG1-220ENST00000544550 CLTCQ00610 1675 aaKnown RBP6.77□□□□□ -1.33
SNHG1-220ENST00000544550 NPHP4O75161 1426 aaPredicted RBP6.76□□□□□ -1.33
SNHG1-220ENST00000544550 ALKQ9UM73 1620 aa6.76□□□□□ -1.33
SNHG1-220ENST00000544550 POTEAQ6S8J7 498 aa6.76□□□□□ -1.33
SNHG1-220ENST00000544550 PHF8Q9UPP1 1060 aa6.76□□□□□ -1.33
SNHG1-220ENST00000544550 SYNMO15061 1565 aa6.76□□□□□ -1.33
SNHG1-220ENST00000544550 FAM135AQ9P2D6 1515 aa6.76□□□□□ -1.33
SNHG1-220ENST00000544550 PLEKHH2Q8IVE3 1493 aa6.75□□□□□ -1.33
SNHG1-220ENST00000544550 NLRP1Q9C000 1473 aa6.75□□□□□ -1.33
SNHG1-220ENST00000544550 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.75□□□□□ -1.337e-33■□□□□ 8.4
SNHG1-220ENST00000544550 PPP1R37O75864 691 aa6.75□□□□□ -1.33
SNHG1-220ENST00000544550 CADPS2Q86UW7 1296 aa6.75□□□□□ -1.33
SNHG1-220ENST00000544550 POLR1AO95602 1720 aaPredicted RBP6.75□□□□□ -1.33
SNHG1-220ENST00000544550 CDC42BPBQ9Y5S2 1711 aa6.75□□□□□ -1.33
SNHG1-220ENST00000544550 DEPDC5O75140 1603 aa6.75□□□□□ -1.33
SNHG1-220ENST00000544550 ATP7AQ04656 1500 aa6.75□□□□□ -1.33
SNHG1-220ENST00000544550 LRRC7Q96NW7 1537 aa6.75□□□□□ -1.33
SNHG1-220ENST00000544550 KIAA1107Q9UPP5 1409 aa6.75□□□□□ -1.33
SNHG1-220ENST00000544550 CCDC18Q5T9S5 1454 aa6.74□□□□□ -1.33
SNHG1-220ENST00000544550 POTEB3A0JP26 581 aa6.74□□□□□ -1.33
SNHG1-220ENST00000544550 POTEBQ6S5H4 581 aa6.74□□□□□ -1.33
SNHG1-220ENST00000544550 ZNF777Q9ULD5 760 aaPredicted RBP6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms