RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 SLIT1O75093 1534 aa24.83■■□□□ 1.57
LIG1-204ENST00000542460 ANKLE2Q86XL3 938 aa24.82■■□□□ 1.56
LIG1-204ENST00000542460 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.81■■□□□ 1.56
LIG1-204ENST00000542460 TXNDC2Q86VQ3 553 aa24.81■■□□□ 1.56
LIG1-204ENST00000542460 RIMS2Q9UQ26 1411 aa24.81■■□□□ 1.56
LIG1-204ENST00000542460 ZFYVE9O95405 1425 aa24.79■■□□□ 1.56
LIG1-204ENST00000542460 LTKP29376 864 aa24.79■■□□□ 1.56
LIG1-204ENST00000542460 MYO5BQ9ULV0 1848 aa24.78■■□□□ 1.56
LIG1-204ENST00000542460 PPP1R15AO75807 674 aaPredicted RBP24.76■■□□□ 1.55
LIG1-204ENST00000542460 VGFO15240 615 aaPredicted RBP24.76■■□□□ 1.55
LIG1-204ENST00000542460 NUTM2DQ5VT03 806 aaPredicted RBP24.76■■□□□ 1.55
LIG1-204ENST00000542460 NCKAP5LQ9HCH0 1330 aa24.76■■□□□ 1.55
LIG1-204ENST00000542460 SCAF11Q99590 1463 aaKnown RBP24.75■■□□□ 1.55
LIG1-204ENST00000542460 FBXO41Q8TF61 875 aa24.75■■□□□ 1.55
LIG1-204ENST00000542460 DMRT2Q9Y5R5 561 aa24.75■■□□□ 1.55
LIG1-204ENST00000542460 NEXMIFQ5QGS0 1516 aa24.74■■□□□ 1.55
LIG1-204ENST00000542460 DCAF11Q8TEB1 546 aa24.73■■□□□ 1.55
LIG1-204ENST00000542460 STAC3Q96MF2 364 aa24.73■■□□□ 1.55
LIG1-204ENST00000542460 L3MBTL2Q969R5 705 aa24.72■■□□□ 1.55
LIG1-204ENST00000542460 TONSLQ96HA7 1378 aa24.72■■□□□ 1.55
LIG1-204ENST00000542460 TIMELESSQ9UNS1 1208 aa24.69■■□□□ 1.54
LIG1-204ENST00000542460 KDM2AQ9Y2K7 1162 aa24.69■■□□□ 1.54
LIG1-204ENST00000542460 MED14O60244 1454 aa24.69■■□□□ 1.54
LIG1-204ENST00000542460 PLEKHG1Q9ULL1 1385 aa24.68■■□□□ 1.54
LIG1-204ENST00000542460 NPHP4O75161 1426 aaPredicted RBP24.67■■□□□ 1.54
LIG1-204ENST00000542460 PPLO60437 1756 aa24.67■■□□□ 1.54
LIG1-204ENST00000542460 BCANQ96GW7 911 aa24.66■■□□□ 1.54
LIG1-204ENST00000542460 ADGRF5Q8IZF2 1346 aa24.66■■□□□ 1.54
LIG1-204ENST00000542460 MYOM2P54296 1465 aa24.65■■□□□ 1.54
LIG1-204ENST00000542460 POLR1AO95602 1720 aaPredicted RBP24.65■■□□□ 1.54
LIG1-204ENST00000542460 CERKQ8TCT0 537 aa24.65■■□□□ 1.54
LIG1-204ENST00000542460 IFT172Q9UG01 1749 aa24.64■■□□□ 1.53
LIG1-204ENST00000542460 SENP3Q9H4L4 574 aaPredicted RBP24.62■■□□□ 1.53
LIG1-204ENST00000542460 NRXN1Q9ULB1 1477 aa24.61■■□□□ 1.53
LIG1-204ENST00000542460 PIK3C2GO75747 1445 aa24.59■■□□□ 1.53
LIG1-204ENST00000542460 SLC26A8Q96RN1 970 aa24.59■■□□□ 1.53
LIG1-204ENST00000542460 IQGAP1P46940 1657 aa24.58■■□□□ 1.53
LIG1-204ENST00000542460 TBX22Q9Y458 520 aa24.58■■□□□ 1.53
LIG1-204ENST00000542460 SETBP1Q9Y6X0 1596 aa24.58■■□□□ 1.52
LIG1-204ENST00000542460 ADAMTS13Q76LX8 1427 aa24.57■■□□□ 1.52
LIG1-204ENST00000542460 C14orf93Q9H972 538 aaKnown RBP24.55■■□□□ 1.52
LIG1-204ENST00000542460 PRAG1Q86YV5 1406 aa24.54■■□□□ 1.52
LIG1-204ENST00000542460 NRXN3Q9Y4C0 1643 aa24.53■■□□□ 1.52
LIG1-204ENST00000542460 CFAP70Q5T0N1 1121 aa24.52■■□□□ 1.52
LIG1-204ENST00000542460 DIP2AQ14689 1571 aa24.51■■□□□ 1.51
LIG1-204ENST00000542460 ALKQ9UM73 1620 aa24.51■■□□□ 1.51
LIG1-204ENST00000542460 LTBP4Q8N2S1 1624 aa24.5■■□□□ 1.51
LIG1-204ENST00000542460 NBPF8Q3BBV2 869 aa24.49■■□□□ 1.51
LIG1-204ENST00000542460 METP08581 1390 aa24.48■■□□□ 1.51
LIG1-204ENST00000542460 PIK3R4Q99570 1358 aa24.48■■□□□ 1.51
LIG1-204ENST00000542460 LAMC1P11047 1609 aa24.45■■□□□ 1.5
LIG1-204ENST00000542460 TMEM132EQ6IEE7 984 aa24.44■■□□□ 1.5
LIG1-204ENST00000542460 ZNF335Q9H4Z2 1342 aaPredicted RBP24.43■■□□□ 1.5
LIG1-204ENST00000542460 KCNA6P17658 529 aa24.43■■□□□ 1.5
LIG1-204ENST00000542460 SETD1AO15047 1707 aaKnown RBP24.42■■□□□ 1.5
LIG1-204ENST00000542460 NBPF1Q3BBV0 1214 aa24.41■■□□□ 1.5
LIG1-204ENST00000542460 AMOTL2Q9Y2J4 779 aa24.41■■□□□ 1.5
LIG1-204ENST00000542460 KIAA1210Q9ULL0 1709 aa24.4■■□□□ 1.5
LIG1-204ENST00000542460 PTPRUQ92729 1446 aa24.39■■□□□ 1.5
LIG1-204ENST00000542460 ROCK2O75116 1388 aaKnown RBP24.38■■□□□ 1.49
LIG1-204ENST00000542460 ASXL1Q8IXJ9 1541 aa24.38■■□□□ 1.49
LIG1-204ENST00000542460 ADGRB1O14514 1584 aa24.38■■□□□ 1.49
LIG1-204ENST00000542460 IQSEC2Q5JU85 1478 aa24.38■■□□□ 1.49
LIG1-204ENST00000542460 LRPPRCP42704 1394 aaKnown RBP24.37■■□□□ 1.49
LIG1-204ENST00000542460 TRPM1Q7Z4N2 1603 aa24.37■■□□□ 1.49
LIG1-204ENST00000542460 YTHDC2Q9H6S0 1430 aaKnown RBP24.36■■□□□ 1.49
LIG1-204ENST00000542460 STK26Q9P289 416 aa24.36■■□□□ 1.49
LIG1-204ENST00000542460 RALGAPBQ86X10 1494 aa24.36■■□□□ 1.49
LIG1-204ENST00000542460 ZEB1P37275 1124 aaPredicted RBP24.35■■□□□ 1.49
LIG1-204ENST00000542460 ABCC11Q96J66 1382 aa24.35■■□□□ 1.49
LIG1-204ENST00000542460 CHD2O14647 1828 aaKnown RBP24.34■■□□□ 1.49
LIG1-204ENST00000542460 GPRASP1Q5JY77 1395 aa24.34■■□□□ 1.49
LIG1-204ENST00000542460 NWD1Q149M9 1564 aa24.33■■□□□ 1.49
LIG1-204ENST00000542460 CARD11Q9BXL7 1154 aa24.32■■□□□ 1.48
LIG1-204ENST00000542460 TRAK1Q9UPV9 953 aa24.31■■□□□ 1.48
LIG1-204ENST00000542460 TECPR2O15040 1411 aa24.31■■□□□ 1.48
LIG1-204ENST00000542460 NKTRP30414 1462 aaKnown RBP24.3■■□□□ 1.48
LIG1-204ENST00000542460 SIRT1Q96EB6 747 aa24.3■■□□□ 1.48
LIG1-204ENST00000542460 XRN1Q8IZH2 1706 aaKnown RBP24.3■■□□□ 1.48
LIG1-204ENST00000542460 PROSER2Q86WR7 435 aaPredicted RBP24.3■■□□□ 1.48
LIG1-204ENST00000542460 CPS1P31327 1500 aa24.29■■□□□ 1.48
LIG1-204ENST00000542460 PTCH1Q13635 1447 aa24.29■■□□□ 1.48
LIG1-204ENST00000542460 STRCP1A6NGW2 1772 aa24.27■■□□□ 1.48
LIG1-204ENST00000542460 ROBO2Q9HCK4 1378 aa24.27■■□□□ 1.48
LIG1-204ENST00000542460 DLC1Q96QB1 1528 aa24.26■■□□□ 1.47
LIG1-204ENST00000542460 FAM135BQ49AJ0 1406 aa24.25■■□□□ 1.47
LIG1-204ENST00000542460 WAPLQ7Z5K2 1190 aa24.24■■□□□ 1.47
LIG1-204ENST00000542460 LRRC7Q96NW7 1537 aa24.23■■□□□ 1.47
LIG1-204ENST00000542460 KNDC1Q76NI1 1749 aa24.23■■□□□ 1.47
LIG1-204ENST00000542460 PRAM1Q96QH2 718 aa24.23■■□□□ 1.47
LIG1-204ENST00000542460 POGKQ9P215 609 aa24.23■■□□□ 1.47
LIG1-204ENST00000542460 TMEM94Q12767 1356 aa24.23■■□□□ 1.47
LIG1-204ENST00000542460 RBM33Q96EV2 1170 aaKnown RBP24.22■■□□□ 1.47
LIG1-204ENST00000542460 NCOA3Q9Y6Q9 1424 aa24.21■■□□□ 1.47
LIG1-204ENST00000542460 UBAP1LF5GYI3 381 aa24.21■■□□□ 1.47
LIG1-204ENST00000542460 EIF3AQ14152 1382 aaKnown RBP24.21■■□□□ 1.47
LIG1-204ENST00000542460 PLEKHH1Q9ULM0 1364 aa24.2■■□□□ 1.46
LIG1-204ENST00000542460 SAFB2Q14151 953 aaKnown RBP eCLIP24.18■■□□□ 1.46
LIG1-204ENST00000542460 C14orf37Q86TY3 774 aa24.18■■□□□ 1.46
LIG1-204ENST00000542460 CENPJQ9HC77 1338 aaPredicted RBP24.18■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms