RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 KDM5AP29375 1690 aaKnown RBP13.42□□□□□ -0.26
SS18-205ENST00000542420 SMG6Q86US8 1419 aaKnown RBP13.41□□□□□ -0.26
SS18-205ENST00000542420 FKBP8Q14318 412 aa13.41□□□□□ -0.26
SS18-205ENST00000542420 CDCA8Q53HL2 280 aa13.41□□□□□ -0.26
SS18-205ENST00000542420 TSHZ2Q9NRE2 1034 aa13.41□□□□□ -0.26
SS18-205ENST00000542420 CCDC184Q52MB2 194 aa13.41□□□□□ -0.26
SS18-205ENST00000542420 PIK3C2BO00750 1634 aa13.41□□□□□ -0.26
SS18-205ENST00000542420 DIP2CQ9Y2E4 1556 aa13.4□□□□□ -0.26
SS18-205ENST00000542420 KIF3BO15066 747 aa13.4□□□□□ -0.26
SS18-205ENST00000542420 RGL3Q3MIN7 710 aa13.4□□□□□ -0.26
SS18-205ENST00000542420 ABCC3O15438 1527 aa13.4□□□□□ -0.26
SS18-205ENST00000542420 NBPF1Q3BBV0 1214 aa13.39□□□□□ -0.27
SS18-205ENST00000542420 MYOM1P52179 1685 aa13.39□□□□□ -0.27
SS18-205ENST00000542420 ARHGAP31Q2M1Z3 1444 aa13.39□□□□□ -0.27
SS18-205ENST00000542420 SBNO2Q9Y2G9 1366 aa13.38□□□□□ -0.27
SS18-205ENST00000542420 PNISRQ8TF01 805 aaKnown RBP13.38□□□□□ -0.27
SS18-205ENST00000542420 REREQ9P2R6 1566 aa13.38□□□□□ -0.27
SS18-205ENST00000542420 NPC1L1Q9UHC9 1359 aa13.38□□□□□ -0.27
SS18-205ENST00000542420 PER1O15534 1290 aaPredicted RBP13.38□□□□□ -0.27
SS18-205ENST00000542420 DISP3Q9P2K9 1392 aa13.37□□□□□ -0.27
SS18-205ENST00000542420 NLRP13Q86W25 1043 aa13.37□□□□□ -0.27
SS18-205ENST00000542420 FAM9BQ8IZU0 186 aa13.36□□□□□ -0.27
SS18-205ENST00000542420 RPGRIP1LQ68CZ1 1315 aa13.36□□□□□ -0.27
SS18-205ENST00000542420 NOS1P29475 1434 aa13.35□□□□□ -0.27
SS18-205ENST00000542420 TMC1Q8TDI8 760 aa13.35□□□□□ -0.27
SS18-205ENST00000542420 NPATQ14207 1427 aa13.34□□□□□ -0.27
SS18-205ENST00000542420 POLR3GLQ9BT43 218 aa13.33□□□□□ -0.28
SS18-205ENST00000542420 ASXL1Q8IXJ9 1541 aa13.32□□□□□ -0.28
SS18-205ENST00000542420 RNF123Q5XPI4 1314 aa13.32□□□□□ -0.28
SS18-205ENST00000542420 BLMP54132 1417 aaPredicted RBP13.32□□□□□ -0.28
SS18-205ENST00000542420 SIGLEC1Q9BZZ2 1709 aa13.32□□□□□ -0.28
SS18-205ENST00000542420 NUDCQ9Y266 331 aa13.31□□□□□ -0.28
SS18-205ENST00000542420 UGGT1Q9NYU2 1555 aa13.31□□□□□ -0.28
SS18-205ENST00000542420 MYT1LQ9UL68 1186 aa13.31□□□□□ -0.28
SS18-205ENST00000542420 DIP2BQ9P265 1576 aa13.31□□□□□ -0.28
SS18-205ENST00000542420 PIK3C2GO75747 1445 aa13.31□□□□□ -0.28
SS18-205ENST00000542420 RIMBP3CA6NJZ7 1639 aa13.3□□□□□ -0.28
SS18-205ENST00000542420 RIMBP3BA6NNM3 1639 aa13.3□□□□□ -0.28
SS18-205ENST00000542420 RIMBP3Q9UFD9 1639 aa13.3□□□□□ -0.28
SS18-205ENST00000542420 PDE3BQ13370 1112 aa13.3□□□□□ -0.28
SS18-205ENST00000542420 ZFYVE9O95405 1425 aa13.3□□□□□ -0.28
SS18-205ENST00000542420 USP32Q8NFA0 1604 aa13.3□□□□□ -0.28
SS18-205ENST00000542420 AGLP35573 1532 aa13.29□□□□□ -0.28
SS18-205ENST00000542420 PREX1Q8TCU6 1659 aa13.29□□□□□ -0.28
SS18-205ENST00000542420 QRICH2Q9H0J4 1663 aa13.28□□□□□ -0.28
SS18-205ENST00000542420 ADGRB1O14514 1584 aa13.28□□□□□ -0.28
SS18-205ENST00000542420 PPP4R2Q9NY27 417 aa13.28□□□□□ -0.28
SS18-205ENST00000542420 NEXMIFQ5QGS0 1516 aa13.27□□□□□ -0.28
SS18-205ENST00000542420 ERVK-7P63135 1459 aa13.27□□□□□ -0.28
SS18-205ENST00000542420 PUS7Q96PZ0 661 aaKnown RBP13.27□□□□□ -0.28
SS18-205ENST00000542420 PANK3Q9H999 370 aa13.27□□□□□ -0.29
SS18-205ENST00000542420 PPP6R1Q9UPN7 881 aa13.25□□□□□ -0.29
SS18-205ENST00000542420 ARHGEF28Q8N1W1 1705 aaKnown RBP13.25□□□□□ -0.29
SS18-205ENST00000542420 CFAP65Q6ZU64 1925 aaKnown RBP13.25□□□□□ -0.29
SS18-205ENST00000542420 C14orf93Q9H972 538 aaKnown RBP13.23□□□□□ -0.29
SS18-205ENST00000542420 KNSTRNQ9Y448 316 aa13.23□□□□□ -0.29
SS18-205ENST00000542420 ADGRF5Q8IZF2 1346 aa13.22□□□□□ -0.29
SS18-205ENST00000542420 TMEM131LA2VDJ0 1609 aa13.22□□□□□ -0.29
SS18-205ENST00000542420 SLC52A1Q9NWF4 448 aa13.22□□□□□ -0.29
SS18-205ENST00000542420 AMER1Q5JTC6 1135 aaPredicted RBP13.21□□□□□ -0.29
SS18-205ENST00000542420 BCANQ96GW7 911 aa13.21□□□□□ -0.3
SS18-205ENST00000542420 MYO5BQ9ULV0 1848 aa13.2□□□□□ -0.3
SS18-205ENST00000542420 CLTCQ00610 1675 aaKnown RBP13.19□□□□□ -0.3
SS18-205ENST00000542420 CFAP70Q5T0N1 1121 aa13.19□□□□□ -0.3
SS18-205ENST00000542420 NGEFQ8N5V2 710 aa13.19□□□□□ -0.3
SS18-205ENST00000542420 CENPJQ9HC77 1338 aaPredicted RBP13.19□□□□□ -0.3
SS18-205ENST00000542420 VGFO15240 615 aaPredicted RBP13.18□□□□□ -0.3
SS18-205ENST00000542420 NINLQ9Y2I6 1382 aa13.18□□□□□ -0.3
SS18-205ENST00000542420 YEATS2Q9ULM3 1422 aa13.17□□□□□ -0.3
SS18-205ENST00000542420 GGT6Q6P531 493 aa13.17□□□□□ -0.3
SS18-205ENST00000542420 ERICH6Q7L0X2 663 aa13.17□□□□□ -0.3
SS18-205ENST00000542420 ARHGEF40Q8TER5 1519 aa13.16□□□□□ -0.3
SS18-205ENST00000542420 SPATA31D1Q6ZQQ2 1576 aa13.16□□□□□ -0.3
SS18-205ENST00000542420 PPP2R1AP30153 589 aa13.16□□□□□ -0.3
SS18-205ENST00000542420 KIF13AQ9H1H9 1805 aa13.16□□□□□ -0.3
SS18-205ENST00000542420 RAPGEF3O95398 923 aa13.15□□□□□ -0.3
SS18-205ENST00000542420 CC2D1BQ5T0F9 858 aaKnown RBP13.15□□□□□ -0.3
SS18-205ENST00000542420 NSD2O96028 1365 aa13.14□□□□□ -0.31
SS18-205ENST00000542420 ANKRD26Q9UPS8 1709 aa13.14□□□□□ -0.31
SS18-205ENST00000542420 TSPOAP1O95153 1857 aa13.13□□□□□ -0.31
SS18-205ENST00000542420 POLR3AO14802 1390 aaPredicted RBP13.12□□□□□ -0.31
SS18-205ENST00000542420 DLC1Q96QB1 1528 aa13.12□□□□□ -0.31
SS18-205ENST00000542420 TULP4Q9NRJ4 1543 aa13.11□□□□□ -0.31
SS18-205ENST00000542420 WDR43Q15061 677 aaKnown RBP eCLIP13.1□□□□□ -0.31
SS18-205ENST00000542420 NCBP3Q53F19 620 aaKnown RBP13.1□□□□□ -0.31
SS18-205ENST00000542420 SETD1AO15047 1707 aaKnown RBP13.1□□□□□ -0.31
SS18-205ENST00000542420 SHPRHQ149N8 1683 aa13.1□□□□□ -0.31
SS18-205ENST00000542420 RCAN3Q9UKA8 241 aa13.09□□□□□ -0.31
SS18-205ENST00000542420 MED14O60244 1454 aa13.09□□□□□ -0.31
SS18-205ENST00000542420 EVC2Q86UK5 1308 aa13.09□□□□□ -0.31
SS18-205ENST00000542420 CHGAP10645 457 aaKnown RBP13.08□□□□□ -0.31
SS18-205ENST00000542420 RRP1P56182 461 aaKnown RBP13.08□□□□□ -0.31
SS18-205ENST00000542420 KNDC1Q76NI1 1749 aa13.08□□□□□ -0.31
SS18-205ENST00000542420 ZNF521Q96K83 1311 aa13.08□□□□□ -0.32
SS18-205ENST00000542420 ANKRD36BQ8N2N9 1353 aa13.08□□□□□ -0.32
SS18-205ENST00000542420 PTPRMP28827 1452 aa13.07□□□□□ -0.32
SS18-205ENST00000542420 FAM69CQ0P6D2 419 aa13.07□□□□□ -0.32
SS18-205ENST00000542420 CNGB1Q14028 1251 aaPredicted RBP13.07□□□□□ -0.32
SS18-205ENST00000542420 CYB5RLQ6IPT4 315 aa13.07□□□□□ -0.32
SS18-205ENST00000542420 ALKQ9UM73 1620 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms