RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 IFT172Q9UG01 1749 aa19.88■□□□□ 0.77
CLIP1-216ENST00000541410 ADGRB3O60242 1522 aa19.87■□□□□ 0.77
CLIP1-216ENST00000541410 STAC3Q96MF2 364 aa19.86■□□□□ 0.77
CLIP1-216ENST00000541410 SCAF11Q99590 1463 aaKnown RBP19.85■□□□□ 0.77
CLIP1-216ENST00000541410 SYNMO15061 1565 aa19.85■□□□□ 0.77
CLIP1-216ENST00000541410 ZMYM4Q5VZL5 1548 aa19.85■□□□□ 0.77
CLIP1-216ENST00000541410 FBXO31Q5XUX0 539 aaPredicted RBP19.85■□□□□ 0.77
CLIP1-216ENST00000541410 PANK3Q9H999 370 aa19.85■□□□□ 0.77
CLIP1-216ENST00000541410 MYOM2P54296 1465 aa19.84■□□□□ 0.77
CLIP1-216ENST00000541410 IDI1Q13907 227 aa19.84■□□□□ 0.77
CLIP1-216ENST00000541410 NEURL4Q96JN8 1562 aa19.83■□□□□ 0.77
CLIP1-216ENST00000541410 CC2D1BQ5T0F9 858 aaKnown RBP19.83■□□□□ 0.76
CLIP1-216ENST00000541410 TMEM132EQ6IEE7 984 aa19.82■□□□□ 0.76
CLIP1-216ENST00000541410 PPLO60437 1756 aa19.82■□□□□ 0.76
CLIP1-216ENST00000541410 PER1O15534 1290 aaPredicted RBP19.81■□□□□ 0.76
CLIP1-216ENST00000541410 SUPT16HQ9Y5B9 1047 aaKnown RBP19.81■□□□□ 0.76
CLIP1-216ENST00000541410 KIAA1210Q9ULL0 1709 aa19.8■□□□□ 0.76
CLIP1-216ENST00000541410 TMC1Q8TDI8 760 aa19.79■□□□□ 0.76
CLIP1-216ENST00000541410 TRAK1Q9UPV9 953 aa19.79■□□□□ 0.76
CLIP1-216ENST00000541410 MYO5BQ9ULV0 1848 aa19.79■□□□□ 0.76
CLIP1-216ENST00000541410 ZC3H13Q5T200 1668 aaKnown RBP19.79■□□□□ 0.76
CLIP1-216ENST00000541410 NRXN1Q9ULB1 1477 aa19.77■□□□□ 0.76
CLIP1-216ENST00000541410 PIK3C2BO00750 1634 aa19.77■□□□□ 0.76
CLIP1-216ENST00000541410 EIF3AQ14152 1382 aaKnown RBP19.76■□□□□ 0.75
CLIP1-216ENST00000541410 ARHGAP31Q2M1Z3 1444 aa19.76■□□□□ 0.75
CLIP1-216ENST00000541410 PREX1Q8TCU6 1659 aa19.76■□□□□ 0.75
CLIP1-216ENST00000541410 PIK3C2GO75747 1445 aa19.75■□□□□ 0.75
CLIP1-216ENST00000541410 KTN1Q86UP2 1357 aaKnown RBP19.75■□□□□ 0.75
CLIP1-216ENST00000541410 BCANQ96GW7 911 aa19.75■□□□□ 0.75
CLIP1-216ENST00000541410 MYBBP1AQ9BQG0 1328 aaKnown RBP19.74■□□□□ 0.75
CLIP1-216ENST00000541410 FKBP8Q14318 412 aa19.74■□□□□ 0.75
CLIP1-216ENST00000541410 RALBP1Q15311 655 aa19.74■□□□□ 0.75
CLIP1-216ENST00000541410 C14orf93Q9H972 538 aaKnown RBP19.74■□□□□ 0.75
CLIP1-216ENST00000541410 CLTCQ00610 1675 aaKnown RBP19.73■□□□□ 0.75
CLIP1-216ENST00000541410 PNISRQ8TF01 805 aaKnown RBP19.72■□□□□ 0.75
CLIP1-216ENST00000541410 NEXMIFQ5QGS0 1516 aa19.71■□□□□ 0.75
CLIP1-216ENST00000541410 RPGRIP1LQ68CZ1 1315 aa19.71■□□□□ 0.75
CLIP1-216ENST00000541410 SLC52A1Q9NWF4 448 aa19.71■□□□□ 0.75
CLIP1-216ENST00000541410 PARD3Q8TEW0 1356 aa19.7■□□□□ 0.74
CLIP1-216ENST00000541410 VGFO15240 615 aaPredicted RBP19.7■□□□□ 0.74
CLIP1-216ENST00000541410 STAG3Q9UJ98 1225 aa19.7■□□□□ 0.74
CLIP1-216ENST00000541410 CDCA8Q53HL2 280 aa19.69■□□□□ 0.74
CLIP1-216ENST00000541410 CENPJQ9HC77 1338 aaPredicted RBP19.68■□□□□ 0.74
CLIP1-216ENST00000541410 ERVK-7P63135 1459 aa19.68■□□□□ 0.74
CLIP1-216ENST00000541410 SAFB2Q14151 953 aaKnown RBP eCLIP19.68■□□□□ 0.74
CLIP1-216ENST00000541410 KNSTRNQ9Y448 316 aa19.68■□□□□ 0.74
CLIP1-216ENST00000541410 MYOM1P52179 1685 aa19.67■□□□□ 0.74
CLIP1-216ENST00000541410 STK26Q9P289 416 aa19.67■□□□□ 0.74
CLIP1-216ENST00000541410 ADGRB1O14514 1584 aa19.67■□□□□ 0.74
CLIP1-216ENST00000541410 TMEM131LA2VDJ0 1609 aa19.67■□□□□ 0.74
CLIP1-216ENST00000541410 KDM5AP29375 1690 aaKnown RBP19.66■□□□□ 0.74
CLIP1-216ENST00000541410 AGLP35573 1532 aa19.66■□□□□ 0.74
CLIP1-216ENST00000541410 ZBED9Q6R2W3 1325 aa19.66■□□□□ 0.74
CLIP1-216ENST00000541410 NLRP13Q86W25 1043 aa19.66■□□□□ 0.74
CLIP1-216ENST00000541410 ARHGEF40Q8TER5 1519 aa19.66■□□□□ 0.74
CLIP1-216ENST00000541410 BRD4O60885 1362 aaPredicted RBP19.66■□□□□ 0.74
CLIP1-216ENST00000541410 REREQ9P2R6 1566 aa19.66■□□□□ 0.74
CLIP1-216ENST00000541410 SETBP1Q9Y6X0 1596 aa19.66■□□□□ 0.74
CLIP1-216ENST00000541410 IRX6P78412 446 aaPredicted RBP19.65■□□□□ 0.74
CLIP1-216ENST00000541410 NEFLP07196 543 aa19.63■□□□□ 0.73
CLIP1-216ENST00000541410 QRICH2Q9H0J4 1663 aa19.63■□□□□ 0.73
CLIP1-216ENST00000541410 ESF1Q9H501 851 aaKnown RBP19.63■□□□□ 0.73
CLIP1-216ENST00000541410 SALL2Q9Y467 1007 aaPredicted RBP19.63■□□□□ 0.73
CLIP1-216ENST00000541410 AMER1Q5JTC6 1135 aaPredicted RBP19.61■□□□□ 0.73
CLIP1-216ENST00000541410 MYO3AQ8NEV4 1616 aa19.61■□□□□ 0.73
CLIP1-216ENST00000541410 TRHP20396 242 aaPredicted RBP19.6■□□□□ 0.73
CLIP1-216ENST00000541410 CARD14Q9BXL6 1004 aa19.59■□□□□ 0.73
CLIP1-216ENST00000541410 PLPPR3Q6T4P5 718 aa19.58■□□□□ 0.73
CLIP1-216ENST00000541410 PPP6R1Q9UPN7 881 aa19.58■□□□□ 0.73
CLIP1-216ENST00000541410 SLC12A5Q9H2X9 1139 aa19.58■□□□□ 0.72
CLIP1-216ENST00000541410 LRPPRCP42704 1394 aaKnown RBP19.58■□□□□ 0.72
CLIP1-216ENST00000541410 ZMYM3Q14202 1370 aa19.57■□□□□ 0.72
CLIP1-216ENST00000541410 ARHGEF28Q8N1W1 1705 aaKnown RBP19.57■□□□□ 0.72
CLIP1-216ENST00000541410 ASXL1Q8IXJ9 1541 aa19.56■□□□□ 0.72
CLIP1-216ENST00000541410 PPP2R1AP30153 589 aa19.55■□□□□ 0.72
CLIP1-216ENST00000541410 SBNO2Q9Y2G9 1366 aa19.55■□□□□ 0.72
CLIP1-216ENST00000541410 SPATA31D1Q6ZQQ2 1576 aa19.54■□□□□ 0.72
CLIP1-216ENST00000541410 SLC24A1O60721 1099 aa19.54■□□□□ 0.72
CLIP1-216ENST00000541410 CABP2Q9NPB3 220 aa19.54■□□□□ 0.72
CLIP1-216ENST00000541410 ZFYVE9O95405 1425 aa19.54■□□□□ 0.72
CLIP1-216ENST00000541410 A2ML1A8K2U0 1454 aa19.53■□□□□ 0.72
CLIP1-216ENST00000541410 CEBPAP49715 358 aaPredicted RBP19.51■□□□□ 0.71
CLIP1-216ENST00000541410 MINK1Q8N4C8 1332 aaPredicted RBP19.51■□□□□ 0.71
CLIP1-216ENST00000541410 PRAM1Q96QH2 718 aa19.51■□□□□ 0.71
CLIP1-216ENST00000541410 RIMS2Q9UQ26 1411 aa19.49■□□□□ 0.71
CLIP1-216ENST00000541410 ALKQ9UM73 1620 aa19.49■□□□□ 0.71
CLIP1-216ENST00000541410 TULP4Q9NRJ4 1543 aa19.49■□□□□ 0.71
CLIP1-216ENST00000541410 TNNT2P45379 298 aaPredicted RBP19.49■□□□□ 0.71
CLIP1-216ENST00000541410 POGKQ9P215 609 aa19.49■□□□□ 0.71
CLIP1-216ENST00000541410 EVC2Q86UK5 1308 aa19.49■□□□□ 0.71
CLIP1-216ENST00000541410 YTHDC2Q9H6S0 1430 aaKnown RBP19.48■□□□□ 0.71
CLIP1-216ENST00000541410 ADAMTS8Q9UP79 889 aa19.48■□□□□ 0.71
CLIP1-216ENST00000541410 NSD3Q9BZ95 1437 aa19.47■□□□□ 0.71
CLIP1-216ENST00000541410 SRPK2P78362 688 aaKnown RBP19.47■□□□□ 0.71
CLIP1-216ENST00000541410 WAPLQ7Z5K2 1190 aa19.45■□□□□ 0.7
CLIP1-216ENST00000541410 NUDCQ9Y266 331 aa19.45■□□□□ 0.7
CLIP1-216ENST00000541410 PTPRMP28827 1452 aa19.45■□□□□ 0.7
CLIP1-216ENST00000541410 TNRQ92752 1358 aa19.44■□□□□ 0.7
CLIP1-216ENST00000541410 SMG6Q86US8 1419 aaKnown RBP19.43■□□□□ 0.7
CLIP1-216ENST00000541410 WDR43Q15061 677 aaKnown RBP eCLIP19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms