RNA–Protein interactions for RNA: ENST00000541122.6

SMARCA4-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS P4 TSL 5 BASIC

Gene SMARCA4, Length 5,139 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-207ENST00000541122 WASHC2AQ641Q2 1341 aa18.25■□□□□ 0.51
SMARCA4-207ENST00000541122 PRKCSHP14314 528 aaPredicted RBP18.25■□□□□ 0.51
SMARCA4-207ENST00000541122 TSR1Q2NL82 804 aaKnown RBP18.25■□□□□ 0.51
SMARCA4-207ENST00000541122 LETM1O95202 739 aaPredicted RBP18.25■□□□□ 0.51
SMARCA4-207ENST00000541122 GORABQ5T7V8 394 aa18.24■□□□□ 0.51
SMARCA4-207ENST00000541122 FGD6Q6ZV73 1430 aa18.24■□□□□ 0.51
SMARCA4-207ENST00000541122 ZKSCAN1P17029 563 aaPredicted RBP18.24■□□□□ 0.51
SMARCA4-207ENST00000541122 RUNDC1Q96C34 613 aa18.24■□□□□ 0.51
SMARCA4-207ENST00000541122 CCAR2Q8N163 923 aaKnown RBP18.23■□□□□ 0.51
SMARCA4-207ENST00000541122 ACBD3Q9H3P7 528 aa18.23■□□□□ 0.51
SMARCA4-207ENST00000541122 KIF21BO75037 1637 aa18.23■□□□□ 0.51
SMARCA4-207ENST00000541122 CDC45O75419 566 aa18.22■□□□□ 0.51
SMARCA4-207ENST00000541122 RRBP1Q9P2E9 1410 aaKnown RBP18.22■□□□□ 0.51
SMARCA4-207ENST00000541122 NINLQ9Y2I6 1382 aa18.22■□□□□ 0.51
SMARCA4-207ENST00000541122 GGT6Q6P531 493 aa18.21■□□□□ 0.51
SMARCA4-207ENST00000541122 SASS6Q6UVJ0 657 aa18.21■□□□□ 0.51
SMARCA4-207ENST00000541122 HOMER1Q86YM7 354 aa18.21■□□□□ 0.51
SMARCA4-207ENST00000541122 IFT57Q9NWB7 429 aa18.21■□□□□ 0.51
SMARCA4-207ENST00000541122 STAC3Q96MF2 364 aa18.2■□□□□ 0.5
SMARCA4-207ENST00000541122 FOXD4L6Q3SYB3 417 aaPredicted RBP18.2■□□□□ 0.5
SMARCA4-207ENST00000541122 FOXD4L3Q6VB84 417 aaPredicted RBP18.2■□□□□ 0.5
SMARCA4-207ENST00000541122 TPD52L1Q16890 204 aaPredicted RBP18.19■□□□□ 0.5
SMARCA4-207ENST00000541122 WASHC2CQ9Y4E1 1318 aa18.19■□□□□ 0.5
SMARCA4-207ENST00000541122 HNRNPMP52272 730 aaKnown RBP eCLIP18.19■□□□□ 0.55e-6■■□□□ 11.8
SMARCA4-207ENST00000541122 RASSF8Q8NHQ8 419 aa18.19■□□□□ 0.5
SMARCA4-207ENST00000541122 CWC15Q9P013 229 aaKnown RBP18.19■□□□□ 0.5
SMARCA4-207ENST00000541122 NPHP1O15259 732 aa18.19■□□□□ 0.5
SMARCA4-207ENST00000541122 SMC3Q9UQE7 1217 aa18.19■□□□□ 0.5
SMARCA4-207ENST00000541122 MYOM3Q5VTT5 1437 aa18.19■□□□□ 0.5
SMARCA4-207ENST00000541122 PDE3AQ14432 1141 aa18.18■□□□□ 0.5
SMARCA4-207ENST00000541122 MNS1Q8NEH6 495 aa18.18■□□□□ 0.5
SMARCA4-207ENST00000541122 BICD2Q8TD16 824 aa18.18■□□□□ 0.5
SMARCA4-207ENST00000541122 EVC2Q86UK5 1308 aa18.18■□□□□ 0.5
SMARCA4-207ENST00000541122 ERCC6Q03468 1493 aa18.17■□□□□ 0.5
SMARCA4-207ENST00000541122 TDRD9Q8NDG6 1382 aaKnown RBP18.17■□□□□ 0.5
SMARCA4-207ENST00000541122 MCM2P49736 904 aa18.17■□□□□ 0.5
SMARCA4-207ENST00000541122 RNF20Q5VTR2 975 aa18.17■□□□□ 0.5
SMARCA4-207ENST00000541122 PDS5BQ9NTI5 1447 aa18.17■□□□□ 0.5
SMARCA4-207ENST00000541122 LRRC9Q6ZRR7 1453 aa18.17■□□□□ 0.5
SMARCA4-207ENST00000541122 GRPEL1Q9HAV7 217 aa18.16■□□□□ 0.5
SMARCA4-207ENST00000541122 HOOK1Q9UJC3 728 aaKnown RBP18.16■□□□□ 0.5
SMARCA4-207ENST00000541122 CPLX2Q6PUV4 134 aaKnown RBP18.16■□□□□ 0.5
SMARCA4-207ENST00000541122 KIF3BO15066 747 aa18.15■□□□□ 0.5
SMARCA4-207ENST00000541122 TSPY26PQ9H489 355 aa18.15■□□□□ 0.5
SMARCA4-207ENST00000541122 ANO2Q9NQ90 1003 aa18.15■□□□□ 0.5
SMARCA4-207ENST00000541122 IPO7O95373 1038 aaKnown RBP18.15■□□□□ 0.5
SMARCA4-207ENST00000541122 RABEP1Q15276 862 aa18.15■□□□□ 0.5
SMARCA4-207ENST00000541122 LRRFIP1Q32MZ4 808 aaKnown RBP18.15■□□□□ 0.5
SMARCA4-207ENST00000541122 LNPKQ9C0E8 428 aa18.15■□□□□ 0.5
SMARCA4-207ENST00000541122 CIZ1Q9ULV3 898 aaPredicted RBP18.15■□□□□ 0.5
SMARCA4-207ENST00000541122 CAVIN1Q6NZI2 390 aaKnown RBP18.14■□□□□ 0.49
SMARCA4-207ENST00000541122 ANKRD20A12PQ8NF67 263 aa18.14■□□□□ 0.49
SMARCA4-207ENST00000541122 BICRAQ9NZM4 1560 aa18.14■□□□□ 0.49
SMARCA4-207ENST00000541122 AKNAQ7Z591 1439 aa18.13■□□□□ 0.49
SMARCA4-207ENST00000541122 CREBRFQ8IUR6 639 aa18.13■□□□□ 0.49
SMARCA4-207ENST00000541122 HSP90B2PQ58FF3 399 aa18.13■□□□□ 0.49
SMARCA4-207ENST00000541122 CCDC73Q6ZRK6 1079 aa18.13■□□□□ 0.49
SMARCA4-207ENST00000541122 PANK1Q8TE04 598 aa18.13■□□□□ 0.49
SMARCA4-207ENST00000541122 ESPNB1AK53 854 aa18.13■□□□□ 0.49
SMARCA4-207ENST00000541122 CLSTN1O94985 981 aa18.13■□□□□ 0.49
SMARCA4-207ENST00000541122 TAF7LQ5H9L4 462 aa18.13■□□□□ 0.49
SMARCA4-207ENST00000541122 TRAK1Q9UPV9 953 aa18.13■□□□□ 0.49
SMARCA4-207ENST00000541122 NAT10Q9H0A0 1025 aaKnown RBP18.12■□□□□ 0.49
SMARCA4-207ENST00000541122 CWC22Q9HCG8 908 aaKnown RBP18.12■□□□□ 0.49
SMARCA4-207ENST00000541122 CHMP3Q9Y3E7 222 aa18.12■□□□□ 0.49
SMARCA4-207ENST00000541122 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.12■□□□□ 0.49
SMARCA4-207ENST00000541122 ELL2O00472 640 aaPredicted RBP18.12■□□□□ 0.49
SMARCA4-207ENST00000541122 DIAPH1O60610 1272 aaKnown RBP18.11■□□□□ 0.49
SMARCA4-207ENST00000541122 VPS37CA5D8V6 355 aaPredicted RBP18.11■□□□□ 0.49
SMARCA4-207ENST00000541122 SMARCA4P51532 1647 aa18.11■□□□□ 0.49
SMARCA4-207ENST00000541122 DHX8Q14562 1220 aaKnown RBP18.11■□□□□ 0.49
SMARCA4-207ENST00000541122 GNAI1P63096 354 aa18.11■□□□□ 0.49
SMARCA4-207ENST00000541122 RIPK4P57078 832 aa18.1■□□□□ 0.49
SMARCA4-207ENST00000541122 AK7Q96M32 723 aa18.1■□□□□ 0.49
SMARCA4-207ENST00000541122 CCP110O43303 1012 aa18.1■□□□□ 0.49
SMARCA4-207ENST00000541122 HSP90AB4PQ58FF6 505 aa18.1■□□□□ 0.49
SMARCA4-207ENST00000541122 CEP89Q96ST8 783 aa18.1■□□□□ 0.49
SMARCA4-207ENST00000541122 PDZRN3Q9UPQ7 1066 aa18.1■□□□□ 0.49
SMARCA4-207ENST00000541122 MSH5O43196 834 aa18.09■□□□□ 0.49
SMARCA4-207ENST00000541122 PES1O00541 588 aaKnown RBP18.08■□□□□ 0.49
SMARCA4-207ENST00000541122 MCM4P33991 863 aa18.08■□□□□ 0.49
SMARCA4-207ENST00000541122 RNF214Q8ND24 703 aa18.08■□□□□ 0.49
SMARCA4-207ENST00000541122 CADPSQ9ULU8 1353 aa18.08■□□□□ 0.49
SMARCA4-207ENST00000541122 ERCC4Q92889 916 aaPredicted RBP18.08■□□□□ 0.49
SMARCA4-207ENST00000541122 AMPHP49418 695 aa18.08■□□□□ 0.48
SMARCA4-207ENST00000541122 CDR1P51861 262 aa18.08■□□□□ 0.48
SMARCA4-207ENST00000541122 TRIM29Q14134 588 aa18.08■□□□□ 0.48
SMARCA4-207ENST00000541122 ADAMTS8Q9UP79 889 aa18.08■□□□□ 0.48
SMARCA4-207ENST00000541122 FYCO1Q9BQS8 1478 aa18.07■□□□□ 0.48
SMARCA4-207ENST00000541122 GCC1Q96CN9 775 aa18.07■□□□□ 0.48
SMARCA4-207ENST00000541122 CDCA7LQ96GN5 454 aa18.07■□□□□ 0.48
SMARCA4-207ENST00000541122 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.06■□□□□ 0.483e-7■■■■□ 26.2
SMARCA4-207ENST00000541122 COG3Q96JB2 828 aa18.06■□□□□ 0.48
SMARCA4-207ENST00000541122 ATAD2BQ9ULI0 1458 aa18.06■□□□□ 0.48
SMARCA4-207ENST00000541122 SYNE3Q6ZMZ3 975 aa18.06■□□□□ 0.48
SMARCA4-207ENST00000541122 RBM10P98175 930 aaKnown RBP18.06■□□□□ 0.48
SMARCA4-207ENST00000541122 TAF3Q5VWG9 929 aa18.06■□□□□ 0.48
SMARCA4-207ENST00000541122 ERC2O15083 957 aa18.06■□□□□ 0.48
SMARCA4-207ENST00000541122 AKAP17AQ02040 695 aaKnown RBP18.06■□□□□ 0.48
SMARCA4-207ENST00000541122 ERICH3Q5RHP9 1530 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms