RNA–Protein interactions for RNA: ENST00000540846.6

SMAD3-204, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-204ENST00000540846 PRAG1Q86YV5 1406 aa17.78■□□□□ 0.44
SMAD3-204ENST00000540846 ARHGAP23Q9P227 1491 aa17.78■□□□□ 0.44
SMAD3-204ENST00000540846 SLIT1O75093 1534 aa17.78■□□□□ 0.44
SMAD3-204ENST00000540846 TRPM1Q7Z4N2 1603 aa17.78■□□□□ 0.44
SMAD3-204ENST00000540846 CHGAP10645 457 aaKnown RBP17.77■□□□□ 0.44
SMAD3-204ENST00000540846 DCAF11Q8TEB1 546 aa17.77■□□□□ 0.44
SMAD3-204ENST00000540846 RPGRIP1LQ68CZ1 1315 aa17.76■□□□□ 0.43
SMAD3-204ENST00000540846 NBPF8Q3BBV2 869 aa17.75■□□□□ 0.43
SMAD3-204ENST00000540846 KIAA1210Q9ULL0 1709 aa17.75■□□□□ 0.43
SMAD3-204ENST00000540846 RIMS2Q9UQ26 1411 aa17.75■□□□□ 0.43
SMAD3-204ENST00000540846 TMEM2Q9UHN6 1383 aa17.75■□□□□ 0.43
SMAD3-204ENST00000540846 PIK3C2GO75747 1445 aa17.73■□□□□ 0.43
SMAD3-204ENST00000540846 ZNF326Q5BKZ1 582 aaKnown RBP17.73■□□□□ 0.43
SMAD3-204ENST00000540846 STAC3Q96MF2 364 aa17.73■□□□□ 0.43
SMAD3-204ENST00000540846 NRXN3Q9Y4C0 1643 aa17.73■□□□□ 0.43
SMAD3-204ENST00000540846 RALGAPBQ86X10 1494 aa17.72■□□□□ 0.43
SMAD3-204ENST00000540846 SETD1AO15047 1707 aaKnown RBP17.72■□□□□ 0.43
SMAD3-204ENST00000540846 ADGRF5Q8IZF2 1346 aa17.72■□□□□ 0.43
SMAD3-204ENST00000540846 KDM2AQ9Y2K7 1162 aa17.72■□□□□ 0.43
SMAD3-204ENST00000540846 STAG3Q9UJ98 1225 aa17.71■□□□□ 0.43
SMAD3-204ENST00000540846 LMTK3Q96Q04 1460 aa17.7■□□□□ 0.42
SMAD3-204ENST00000540846 LAMC1P11047 1609 aa17.7■□□□□ 0.42
SMAD3-204ENST00000540846 IQGAP1P46940 1657 aa17.7■□□□□ 0.42
SMAD3-204ENST00000540846 SETBP1Q9Y6X0 1596 aa17.69■□□□□ 0.42
SMAD3-204ENST00000540846 POLR1AO95602 1720 aaPredicted RBP17.69■□□□□ 0.42
SMAD3-204ENST00000540846 THEMISQ8N1K5 641 aaPredicted RBP17.67■□□□□ 0.42
SMAD3-204ENST00000540846 ASXL1Q8IXJ9 1541 aa17.66■□□□□ 0.42
SMAD3-204ENST00000540846 NUTM2DQ5VT03 806 aaPredicted RBP17.66■□□□□ 0.42
SMAD3-204ENST00000540846 SCAF11Q99590 1463 aaKnown RBP17.66■□□□□ 0.42
SMAD3-204ENST00000540846 VGFO15240 615 aaPredicted RBP17.66■□□□□ 0.42
SMAD3-204ENST00000540846 LTKP29376 864 aa17.66■□□□□ 0.42
SMAD3-204ENST00000540846 GPRASP1Q5JY77 1395 aa17.66■□□□□ 0.42
SMAD3-204ENST00000540846 ADGRB1O14514 1584 aa17.65■□□□□ 0.42
SMAD3-204ENST00000540846 ALKQ9UM73 1620 aa17.64■□□□□ 0.42
SMAD3-204ENST00000540846 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.63■□□□□ 0.41
SMAD3-204ENST00000540846 PLEKHG1Q9ULL1 1385 aa17.63■□□□□ 0.41
SMAD3-204ENST00000540846 MED14O60244 1454 aa17.62■□□□□ 0.41
SMAD3-204ENST00000540846 ADAMTS13Q76LX8 1427 aa17.62■□□□□ 0.41
SMAD3-204ENST00000540846 NBPF1Q3BBV0 1214 aa17.61■□□□□ 0.41
SMAD3-204ENST00000540846 C14orf93Q9H972 538 aaKnown RBP17.61■□□□□ 0.41
SMAD3-204ENST00000540846 STRCQ7RTU9 1775 aa17.6■□□□□ 0.41
SMAD3-204ENST00000540846 CFAP70Q5T0N1 1121 aa17.6■□□□□ 0.41
SMAD3-204ENST00000540846 TXNDC2Q86VQ3 553 aa17.59■□□□□ 0.41
SMAD3-204ENST00000540846 DIP2AQ14689 1571 aa17.59■□□□□ 0.41
SMAD3-204ENST00000540846 ROCK2O75116 1388 aaKnown RBP17.58■□□□□ 0.4
SMAD3-204ENST00000540846 HDGFP51858 240 aaKnown RBP17.57■□□□□ 0.4
SMAD3-204ENST00000540846 MIER1Q8N108 512 aa17.57■□□□□ 0.4
SMAD3-204ENST00000540846 EID1Q9Y6B2 187 aa17.57■□□□□ 0.4
SMAD3-204ENST00000540846 ARHGEF28Q8N1W1 1705 aaKnown RBP17.56■□□□□ 0.4
SMAD3-204ENST00000540846 KNDC1Q76NI1 1749 aa17.54■□□□□ 0.4
SMAD3-204ENST00000540846 HSPA2P54652 639 aa17.54■□□□□ 0.4
SMAD3-204ENST00000540846 EIF4G2P78344 907 aaKnown RBP eCLIP17.54■□□□□ 0.4
SMAD3-204ENST00000540846 ANKLE2Q86XL3 938 aa17.54■□□□□ 0.4
SMAD3-204ENST00000540846 NPHP4O75161 1426 aaPredicted RBP17.54■□□□□ 0.4
SMAD3-204ENST00000540846 HSPA5P11021 654 aaKnown RBP17.53■□□□□ 0.4
SMAD3-204ENST00000540846 SENP3Q9H4L4 574 aaPredicted RBP17.53■□□□□ 0.4
SMAD3-204ENST00000540846 METP08581 1390 aa17.53■□□□□ 0.4
SMAD3-204ENST00000540846 HIRIP3Q9BW71 556 aaPredicted RBP17.53■□□□□ 0.4
SMAD3-204ENST00000540846 USP47Q96K76 1375 aa17.52■□□□□ 0.4
SMAD3-204ENST00000540846 CARD11Q9BXL7 1154 aa17.52■□□□□ 0.39
SMAD3-204ENST00000540846 XRN1Q8IZH2 1706 aaKnown RBP17.51■□□□□ 0.39
SMAD3-204ENST00000540846 NCKAP5LQ9HCH0 1330 aa17.51■□□□□ 0.39
SMAD3-204ENST00000540846 CHD2O14647 1828 aaKnown RBP17.5■□□□□ 0.39
SMAD3-204ENST00000540846 TMEM132EQ6IEE7 984 aa17.5■□□□□ 0.39
SMAD3-204ENST00000540846 YTHDC2Q9H6S0 1430 aaKnown RBP17.5■□□□□ 0.39
SMAD3-204ENST00000540846 CPS1P31327 1500 aa17.49■□□□□ 0.39
SMAD3-204ENST00000540846 TBX22Q9Y458 520 aa17.49■□□□□ 0.39
SMAD3-204ENST00000540846 TECPR2O15040 1411 aa17.48■□□□□ 0.39
SMAD3-204ENST00000540846 PTPRUQ92729 1446 aa17.48■□□□□ 0.39
SMAD3-204ENST00000540846 DLC1Q96QB1 1528 aa17.48■□□□□ 0.39
SMAD3-204ENST00000540846 SLC26A8Q96RN1 970 aa17.48■□□□□ 0.39
SMAD3-204ENST00000540846 LRPPRCP42704 1394 aaKnown RBP17.48■□□□□ 0.39
SMAD3-204ENST00000540846 NWD1Q149M9 1564 aa17.46■□□□□ 0.39
SMAD3-204ENST00000540846 QRICH2Q9H0J4 1663 aa17.46■□□□□ 0.39
SMAD3-204ENST00000540846 DDX10Q13206 875 aaKnown RBP17.46■□□□□ 0.39
SMAD3-204ENST00000540846 PIK3R4Q99570 1358 aa17.45■□□□□ 0.38
SMAD3-204ENST00000540846 ABCC11Q96J66 1382 aa17.45■□□□□ 0.38
SMAD3-204ENST00000540846 STRCP1A6NGW2 1772 aa17.44■□□□□ 0.38
SMAD3-204ENST00000540846 WASHC2AQ641Q2 1341 aa17.43■□□□□ 0.38
SMAD3-204ENST00000540846 BCANQ96GW7 911 aa17.43■□□□□ 0.38
SMAD3-204ENST00000540846 CCDC7Q96M83 1385 aa17.42■□□□□ 0.38
SMAD3-204ENST00000540846 ST20-MTHFSA0A0A6YYL1 179 aa17.41■□□□□ 0.38
SMAD3-204ENST00000540846 TRAK1Q9UPV9 953 aa17.41■□□□□ 0.38
SMAD3-204ENST00000540846 PTCH1Q13635 1447 aa17.41■□□□□ 0.38
SMAD3-204ENST00000540846 EIF3AQ14152 1382 aaKnown RBP17.41■□□□□ 0.38
SMAD3-204ENST00000540846 TESK2Q96S53 571 aa17.4■□□□□ 0.38
SMAD3-204ENST00000540846 SBNO2Q9Y2G9 1366 aa17.4■□□□□ 0.38
SMAD3-204ENST00000540846 FAM135BQ49AJ0 1406 aa17.4■□□□□ 0.38
SMAD3-204ENST00000540846 ROBO2Q9HCK4 1378 aa17.39■□□□□ 0.37
SMAD3-204ENST00000540846 STK26Q9P289 416 aa17.39■□□□□ 0.37
SMAD3-204ENST00000540846 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.38■□□□□ 0.37
SMAD3-204ENST00000540846 PLEKHH1Q9ULM0 1364 aa17.37■□□□□ 0.37
SMAD3-204ENST00000540846 SIRT1Q96EB6 747 aa17.36■□□□□ 0.37
SMAD3-204ENST00000540846 CENPJQ9HC77 1338 aaPredicted RBP17.36■□□□□ 0.37
SMAD3-204ENST00000540846 TULP4Q9NRJ4 1543 aa17.36■□□□□ 0.37
SMAD3-204ENST00000540846 AMOTL2Q9Y2J4 779 aa17.36■□□□□ 0.37
SMAD3-204ENST00000540846 ADGRB2O60241 1585 aa17.35■□□□□ 0.37
SMAD3-204ENST00000540846 C11orf95C9JLR9 678 aaPredicted RBP17.35■□□□□ 0.37
SMAD3-204ENST00000540846 NKTRP30414 1462 aaKnown RBP17.35■□□□□ 0.37
SMAD3-204ENST00000540846 KCNA6P17658 529 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms