RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 CNGB1Q14028 1251 aaPredicted RBP13.3□□□□□ -0.28
CLIP1-212ENST00000540304 KIAA1210Q9ULL0 1709 aa13.3□□□□□ -0.28
CLIP1-212ENST00000540304 MYOM2P54296 1465 aa13.29□□□□□ -0.28
CLIP1-212ENST00000540304 WASHC2CQ9Y4E1 1318 aa13.29□□□□□ -0.28
CLIP1-212ENST00000540304 KIF13AQ9H1H9 1805 aa13.29□□□□□ -0.28
CLIP1-212ENST00000540304 IQGAP1P46940 1657 aa13.29□□□□□ -0.28
CLIP1-212ENST00000540304 PRKRIP1Q9H875 184 aaPredicted RBP13.28□□□□□ -0.28
CLIP1-212ENST00000540304 ADGRB3O60242 1522 aa13.28□□□□□ -0.28
CLIP1-212ENST00000540304 CFAP65Q6ZU64 1925 aaKnown RBP13.27□□□□□ -0.29
CLIP1-212ENST00000540304 COL17A1Q9UMD9 1497 aaPredicted RBP13.26□□□□□ -0.29
CLIP1-212ENST00000540304 SIGLEC1Q9BZZ2 1709 aa13.26□□□□□ -0.29
CLIP1-212ENST00000540304 REREQ9P2R6 1566 aa13.26□□□□□ -0.29
CLIP1-212ENST00000540304 ARHGAP31Q2M1Z3 1444 aa13.25□□□□□ -0.29
CLIP1-212ENST00000540304 NOS1P29475 1434 aa13.25□□□□□ -0.29
CLIP1-212ENST00000540304 PIK3C2BO00750 1634 aa13.24□□□□□ -0.29
CLIP1-212ENST00000540304 TESK2Q96S53 571 aa13.24□□□□□ -0.29
CLIP1-212ENST00000540304 PPLO60437 1756 aa13.23□□□□□ -0.29
CLIP1-212ENST00000540304 CCDC136Q96JN2 1154 aa13.23□□□□□ -0.29
CLIP1-212ENST00000540304 RTN4Q9NQC3 1192 aaKnown RBP13.23□□□□□ -0.29
CLIP1-212ENST00000540304 SCAF11Q99590 1463 aaKnown RBP13.23□□□□□ -0.29
CLIP1-212ENST00000540304 NRXN1Q9ULB1 1477 aa13.23□□□□□ -0.29
CLIP1-212ENST00000540304 SYNMO15061 1565 aa13.23□□□□□ -0.29
CLIP1-212ENST00000540304 SALL2Q9Y467 1007 aaPredicted RBP13.23□□□□□ -0.29
CLIP1-212ENST00000540304 PKNOX2Q96KN3 472 aa13.22□□□□□ -0.29
CLIP1-212ENST00000540304 AGLP35573 1532 aa13.21□□□□□ -0.29
CLIP1-212ENST00000540304 CCDC184Q52MB2 194 aa13.21□□□□□ -0.29
CLIP1-212ENST00000540304 DISP3Q9P2K9 1392 aa13.21□□□□□ -0.29
CLIP1-212ENST00000540304 TMF1P82094 1093 aa13.2□□□□□ -0.3
CLIP1-212ENST00000540304 ADGRF5Q8IZF2 1346 aa13.2□□□□□ -0.3
CLIP1-212ENST00000540304 EIF3AQ14152 1382 aaKnown RBP13.2□□□□□ -0.3
CLIP1-212ENST00000540304 PREX1Q8TCU6 1659 aa13.2□□□□□ -0.3
CLIP1-212ENST00000540304 CHGAP10645 457 aaKnown RBP13.19□□□□□ -0.3
CLIP1-212ENST00000540304 MRS2Q9HD23 443 aa13.19□□□□□ -0.3
CLIP1-212ENST00000540304 ARHGEF40Q8TER5 1519 aa13.19□□□□□ -0.3
CLIP1-212ENST00000540304 RPGRIP1LQ68CZ1 1315 aa13.18□□□□□ -0.3
CLIP1-212ENST00000540304 SETBP1Q9Y6X0 1596 aa13.18□□□□□ -0.3
CLIP1-212ENST00000540304 KTN1Q86UP2 1357 aaKnown RBP13.17□□□□□ -0.3
CLIP1-212ENST00000540304 PIK3C2GO75747 1445 aa13.17□□□□□ -0.3
CLIP1-212ENST00000540304 CFAP70Q5T0N1 1121 aa13.17□□□□□ -0.3
CLIP1-212ENST00000540304 PPP6R1Q9UPN7 881 aa13.16□□□□□ -0.3
CLIP1-212ENST00000540304 NEXMIFQ5QGS0 1516 aa13.15□□□□□ -0.3
CLIP1-212ENST00000540304 MYO3AQ8NEV4 1616 aa13.15□□□□□ -0.3
CLIP1-212ENST00000540304 SLC52A1Q9NWF4 448 aa13.15□□□□□ -0.3
CLIP1-212ENST00000540304 HNRNPUQ00839 825 aaKnown RBP eCLIP13.14□□□□□ -0.31
CLIP1-212ENST00000540304 CLTCQ00610 1675 aaKnown RBP13.14□□□□□ -0.31
CLIP1-212ENST00000540304 CDCA8Q53HL2 280 aa13.14□□□□□ -0.31
CLIP1-212ENST00000540304 MYO5BQ9ULV0 1848 aa13.13□□□□□ -0.31
CLIP1-212ENST00000540304 TMEM131LA2VDJ0 1609 aa13.13□□□□□ -0.31
CLIP1-212ENST00000540304 RALBP1Q15311 655 aa13.13□□□□□ -0.31
CLIP1-212ENST00000540304 KDM5AP29375 1690 aaKnown RBP13.12□□□□□ -0.31
CLIP1-212ENST00000540304 ERVK-7P63135 1459 aa13.12□□□□□ -0.31
CLIP1-212ENST00000540304 IDI1Q13907 227 aa13.12□□□□□ -0.31
CLIP1-212ENST00000540304 FAM9BQ8IZU0 186 aa13.12□□□□□ -0.31
CLIP1-212ENST00000540304 C14orf93Q9H972 538 aaKnown RBP13.12□□□□□ -0.31
CLIP1-212ENST00000540304 ADGRB1O14514 1584 aa13.12□□□□□ -0.31
CLIP1-212ENST00000540304 PER1O15534 1290 aaPredicted RBP13.11□□□□□ -0.31
CLIP1-212ENST00000540304 MYBBP1AQ9BQG0 1328 aaKnown RBP13.1□□□□□ -0.31
CLIP1-212ENST00000540304 SENP3-EIF4A1A0A087X0R7 540 aa13.1□□□□□ -0.31
CLIP1-212ENST00000540304 VGFO15240 615 aaPredicted RBP13.1□□□□□ -0.31
CLIP1-212ENST00000540304 MYOM1P52179 1685 aa13.1□□□□□ -0.31
CLIP1-212ENST00000540304 PARD3Q8TEW0 1356 aa13.1□□□□□ -0.31
CLIP1-212ENST00000540304 PANK3Q9H999 370 aa13.1□□□□□ -0.31
CLIP1-212ENST00000540304 ZFYVE9O95405 1425 aa13.1□□□□□ -0.31
CLIP1-212ENST00000540304 SBNO2Q9Y2G9 1366 aa13.09□□□□□ -0.31
CLIP1-212ENST00000540304 SPATA31D1Q6ZQQ2 1576 aa13.09□□□□□ -0.31
CLIP1-212ENST00000540304 BRD4O60885 1362 aaPredicted RBP13.09□□□□□ -0.31
CLIP1-212ENST00000540304 QRICH2Q9H0J4 1663 aa13.08□□□□□ -0.32
CLIP1-212ENST00000540304 TSHZ2Q9NRE2 1034 aa13.08□□□□□ -0.32
CLIP1-212ENST00000540304 FBXO31Q5XUX0 539 aaPredicted RBP13.07□□□□□ -0.32
CLIP1-212ENST00000540304 TMC1Q8TDI8 760 aa13.07□□□□□ -0.32
CLIP1-212ENST00000540304 CENPJQ9HC77 1338 aaPredicted RBP13.06□□□□□ -0.32
CLIP1-212ENST00000540304 ARHGEF28Q8N1W1 1705 aaKnown RBP13.05□□□□□ -0.32
CLIP1-212ENST00000540304 MLECQ14165 292 aa13.05□□□□□ -0.32
CLIP1-212ENST00000540304 ZBED9Q6R2W3 1325 aa13.05□□□□□ -0.32
CLIP1-212ENST00000540304 NUTM2DQ5VT03 806 aaPredicted RBP13.04□□□□□ -0.32
CLIP1-212ENST00000540304 NLRP13Q86W25 1043 aa13.04□□□□□ -0.32
CLIP1-212ENST00000540304 PNISRQ8TF01 805 aaKnown RBP13.04□□□□□ -0.32
CLIP1-212ENST00000540304 SUPT16HQ9Y5B9 1047 aaKnown RBP13.04□□□□□ -0.32
CLIP1-212ENST00000540304 MSH5O43196 834 aa13.04□□□□□ -0.32
CLIP1-212ENST00000540304 TRAK1Q9UPV9 953 aa13.04□□□□□ -0.32
CLIP1-212ENST00000540304 TMEM132EQ6IEE7 984 aa13.03□□□□□ -0.32
CLIP1-212ENST00000540304 BCANQ96GW7 911 aa13.03□□□□□ -0.32
CLIP1-212ENST00000540304 CC2D1BQ5T0F9 858 aaKnown RBP13.03□□□□□ -0.32
CLIP1-212ENST00000540304 KNSTRNQ9Y448 316 aa13.02□□□□□ -0.32
CLIP1-212ENST00000540304 LRPPRCP42704 1394 aaKnown RBP13.02□□□□□ -0.32
CLIP1-212ENST00000540304 ASXL1Q8IXJ9 1541 aa13.02□□□□□ -0.33
CLIP1-212ENST00000540304 ESF1Q9H501 851 aaKnown RBP13.02□□□□□ -0.33
CLIP1-212ENST00000540304 STAG3Q9UJ98 1225 aa13.01□□□□□ -0.33
CLIP1-212ENST00000540304 A2ML1A8K2U0 1454 aa13.01□□□□□ -0.33
CLIP1-212ENST00000540304 KCNA4P22459 653 aa13.01□□□□□ -0.33
CLIP1-212ENST00000540304 ZMYM3Q14202 1370 aa13□□□□□ -0.33
CLIP1-212ENST00000540304 NPC1L1Q9UHC9 1359 aa13□□□□□ -0.33
CLIP1-212ENST00000540304 AMER1Q5JTC6 1135 aaPredicted RBP12.99□□□□□ -0.33
CLIP1-212ENST00000540304 ALKQ9UM73 1620 aa12.98□□□□□ -0.33
CLIP1-212ENST00000540304 NEFLP07196 543 aa12.98□□□□□ -0.33
CLIP1-212ENST00000540304 FKBP8Q14318 412 aa12.98□□□□□ -0.33
CLIP1-212ENST00000540304 RIMS2Q9UQ26 1411 aa12.96□□□□□ -0.33
CLIP1-212ENST00000540304 TULP4Q9NRJ4 1543 aa12.96□□□□□ -0.33
CLIP1-212ENST00000540304 YTHDC2Q9H6S0 1430 aaKnown RBP12.95□□□□□ -0.34
CLIP1-212ENST00000540304 PUS7Q96PZ0 661 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms