RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 CENPJQ9HC77 1338 aaPredicted RBP9.77□□□□□ -0.84
MSH6-209ENST00000538136 UHRF1BP1Q6BDS2 1440 aa9.77□□□□□ -0.85
MSH6-209ENST00000538136 PANK3Q9H999 370 aa9.76□□□□□ -0.85
MSH6-209ENST00000538136 MSH5O43196 834 aa9.76□□□□□ -0.85
MSH6-209ENST00000538136 PRDM11Q9NQV5 511 aa9.76□□□□□ -0.85
MSH6-209ENST00000538136 PTPN23Q9H3S7 1636 aa9.76□□□□□ -0.85
MSH6-209ENST00000538136 NPM2Q86SE8 214 aaKnown RBP9.76□□□□□ -0.85
MSH6-209ENST00000538136 NOS1P29475 1434 aa9.75□□□□□ -0.85
MSH6-209ENST00000538136 WDR43Q15061 677 aaKnown RBP eCLIP9.75□□□□□ -0.852e-9■□□□□ 9.3
MSH6-209ENST00000538136 UHRF1BP1LA0JNW5 1464 aa9.74□□□□□ -0.85
MSH6-209ENST00000538136 RRBP1Q9P2E9 1410 aaKnown RBP9.73□□□□□ -0.85
MSH6-209ENST00000538136 CDCA8Q53HL2 280 aa9.73□□□□□ -0.85
MSH6-209ENST00000538136 SAMD9Q5K651 1589 aa9.73□□□□□ -0.85
MSH6-209ENST00000538136 RRS1Q15050 365 aaKnown RBP9.73□□□□□ -0.85
MSH6-209ENST00000538136 DDX54Q8TDD1 881 aaKnown RBP9.73□□□□□ -0.85
MSH6-209ENST00000538136 TERF2IPQ9NYB0 399 aa9.73□□□□□ -0.85
MSH6-209ENST00000538136 EVC2Q86UK5 1308 aa9.72□□□□□ -0.85
MSH6-209ENST00000538136 U2AF1L5P0DN76 240 aaPredicted RBP9.72□□□□□ -0.85
MSH6-209ENST00000538136 HNRNPUQ00839 825 aaKnown RBP eCLIP9.72□□□□□ -0.851e-6■□□□□ 11
MSH6-209ENST00000538136 U2AF1Q01081 240 aaKnown RBP eCLIP9.72□□□□□ -0.85
MSH6-209ENST00000538136 NUDT16Q96DE0 195 aaKnown RBP9.72□□□□□ -0.85
MSH6-209ENST00000538136 NPHP1O15259 732 aa9.72□□□□□ -0.85
MSH6-209ENST00000538136 FAM182BQ5T319 152 aa9.72□□□□□ -0.85
MSH6-209ENST00000538136 RRP7AQ9Y3A4 280 aaKnown RBP9.72□□□□□ -0.85
MSH6-209ENST00000538136 MIER1Q8N108 512 aa9.72□□□□□ -0.85
MSH6-209ENST00000538136 WWC3Q9ULE0 1092 aa9.72□□□□□ -0.85
MSH6-209ENST00000538136 ZFYVE16Q7Z3T8 1539 aa9.71□□□□□ -0.85
MSH6-209ENST00000538136 NEO1Q92859 1461 aa9.71□□□□□ -0.85
MSH6-209ENST00000538136 PPP1R1BQ9UD71 204 aaPredicted RBP9.71□□□□□ -0.85
MSH6-209ENST00000538136 ZRANB1Q9UGI0 708 aa9.71□□□□□ -0.85
MSH6-209ENST00000538136 KIAA1107Q9UPP5 1409 aa9.71□□□□□ -0.85
MSH6-209ENST00000538136 FAM135AQ9P2D6 1515 aa9.71□□□□□ -0.85
MSH6-209ENST00000538136 HMOX1P09601 288 aa9.71□□□□□ -0.86
MSH6-209ENST00000538136 CCDC146Q8IYE0 955 aa9.71□□□□□ -0.86
MSH6-209ENST00000538136 HFM1A2PYH4 1435 aa9.71□□□□□ -0.86
MSH6-209ENST00000538136 CADPS2Q86UW7 1296 aa9.7□□□□□ -0.86
MSH6-209ENST00000538136 USHBP1Q8N6Y0 703 aa9.7□□□□□ -0.86
MSH6-209ENST00000538136 COG3Q96JB2 828 aa9.7□□□□□ -0.86
MSH6-209ENST00000538136 PHF8Q9UPP1 1060 aa9.7□□□□□ -0.86
MSH6-209ENST00000538136 KRT28Q7Z3Y7 464 aa9.7□□□□□ -0.86
MSH6-209ENST00000538136 SLAIN2Q9P270 581 aa9.7□□□□□ -0.86
MSH6-209ENST00000538136 TOM1L2Q6ZVM7 507 aa9.69□□□□□ -0.86
MSH6-209ENST00000538136 NGEFQ8N5V2 710 aa9.69□□□□□ -0.86
MSH6-209ENST00000538136 MBD5Q9P267 1494 aa9.69□□□□□ -0.86
MSH6-209ENST00000538136 USP47Q96K76 1375 aa9.69□□□□□ -0.86
MSH6-209ENST00000538136 ATP7AQ04656 1500 aa9.69□□□□□ -0.86
MSH6-209ENST00000538136 ELL2O00472 640 aaPredicted RBP9.68□□□□□ -0.86
MSH6-209ENST00000538136 RIMS2Q9UQ26 1411 aa9.68□□□□□ -0.86
MSH6-209ENST00000538136 NME9Q86XW9 330 aa9.68□□□□□ -0.86
MSH6-209ENST00000538136 CANXP27824 592 aaKnown RBP9.67□□□□□ -0.86
MSH6-209ENST00000538136 C19orf44Q9H6X5 657 aa9.67□□□□□ -0.86
MSH6-209ENST00000538136 MSH6P52701 1360 aa9.67□□□□□ -0.86
MSH6-209ENST00000538136 GPRASP1Q5JY77 1395 aa9.67□□□□□ -0.86
MSH6-209ENST00000538136 NPATQ14207 1427 aa9.67□□□□□ -0.86
MSH6-209ENST00000538136 NECTIN2Q92692 538 aa9.66□□□□□ -0.86
MSH6-209ENST00000538136 CCDC61Q9Y6R9 512 aa9.66□□□□□ -0.86
MSH6-209ENST00000538136 SRCAPQ6ZRS2 3230 aa9.66□□□□□ -0.86
MSH6-209ENST00000538136 TMEM94Q12767 1356 aa9.66□□□□□ -0.86
MSH6-209ENST00000538136 TCERG1O14776 1098 aaKnown RBP9.66□□□□□ -0.86
MSH6-209ENST00000538136 CFAP53Q96M91 514 aa9.66□□□□□ -0.86
MSH6-209ENST00000538136 UGGT1Q9NYU2 1555 aa9.66□□□□□ -0.86
MSH6-209ENST00000538136 RTEL1-TNFRSF6BF6WH68 1400 aa9.65□□□□□ -0.86
MSH6-209ENST00000538136 IRX6P78412 446 aaPredicted RBP9.64□□□□□ -0.87
MSH6-209ENST00000538136 CERKQ8TCT0 537 aa9.64□□□□□ -0.87
MSH6-209ENST00000538136 MAPKBP1O60336 1514 aa9.64□□□□□ -0.87
MSH6-209ENST00000538136 ROCK1Q13464 1354 aa9.64□□□□□ -0.87
MSH6-209ENST00000538136 DIP2BQ9P265 1576 aa9.63□□□□□ -0.87
MSH6-209ENST00000538136 WASLO00401 505 aaPredicted RBP9.63□□□□□ -0.87
MSH6-209ENST00000538136 HSPA1LP34931 641 aa9.63□□□□□ -0.87
MSH6-209ENST00000538136 SAMD9LQ8IVG5 1584 aa9.63□□□□□ -0.87
MSH6-209ENST00000538136 ANKRD30BQ9BXX2 1392 aa9.63□□□□□ -0.87
MSH6-209ENST00000538136 MAPK8IP3Q9UPT6 1336 aa9.63□□□□□ -0.87
MSH6-209ENST00000538136 C11orf95C9JLR9 678 aaPredicted RBP9.63□□□□□ -0.87
MSH6-209ENST00000538136 TMEM2Q9UHN6 1383 aa9.62□□□□□ -0.87
MSH6-209ENST00000538136 ACEP12821 1306 aa9.62□□□□□ -0.87
MSH6-209ENST00000538136 C14orf93Q9H972 538 aaKnown RBP9.62□□□□□ -0.87
MSH6-209ENST00000538136 NUDCQ9Y266 331 aa9.61□□□□□ -0.87
MSH6-209ENST00000538136 PLEKHH1Q9ULM0 1364 aa9.61□□□□□ -0.87
MSH6-209ENST00000538136 METP08581 1390 aa9.61□□□□□ -0.87
MSH6-209ENST00000538136 EIF3AQ14152 1382 aaKnown RBP9.61□□□□□ -0.87
MSH6-209ENST00000538136 PDE3BQ13370 1112 aa9.61□□□□□ -0.87
MSH6-209ENST00000538136 NLRP13Q86W25 1043 aa9.61□□□□□ -0.87
MSH6-209ENST00000538136 TBX22Q9Y458 520 aa9.61□□□□□ -0.87
MSH6-209ENST00000538136 PTPRMP28827 1452 aa9.6□□□□□ -0.87
MSH6-209ENST00000538136 FAM177BA6PVY3 158 aa9.6□□□□□ -0.87
MSH6-209ENST00000538136 ACIN1Q9UKV3 1341 aaKnown RBP9.6□□□□□ -0.87
MSH6-209ENST00000538136 DISP3Q9P2K9 1392 aa9.6□□□□□ -0.87
MSH6-209ENST00000538136 ACSBG1Q96GR2 724 aa9.6□□□□□ -0.87
MSH6-209ENST00000538136 RAPGEF4Q8WZA2 1011 aa9.59□□□□□ -0.87
MSH6-209ENST00000538136 DUOX2Q9NRD8 1548 aa9.59□□□□□ -0.87
MSH6-209ENST00000538136 MTHFSP49914 203 aa9.59□□□□□ -0.87
MSH6-209ENST00000538136 EMILIN1Q9Y6C2 1016 aa9.59□□□□□ -0.87
MSH6-209ENST00000538136 PELP1Q8IZL8 1130 aaKnown RBP9.58□□□□□ -0.88
MSH6-209ENST00000538136 BTG4Q9NY30 223 aa9.58□□□□□ -0.88
MSH6-209ENST00000538136 RTF1Q92541 710 aaKnown RBP9.58□□□□□ -0.88
MSH6-209ENST00000538136 LRRC59Q96AG4 307 aaKnown RBP9.58□□□□□ -0.88
MSH6-209ENST00000538136 SHROOM2Q13796 1616 aa9.58□□□□□ -0.88
MSH6-209ENST00000538136 RPGRIP1LQ68CZ1 1315 aa9.58□□□□□ -0.88
MSH6-209ENST00000538136 NEFLP07196 543 aa9.57□□□□□ -0.88
MSH6-209ENST00000538136 SF3B2Q13435 895 aaKnown RBP9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms