RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 FOXD4L1Q9NU39 408 aa13.12□□□□□ -0.31
CLIP1-209ENST00000537178 H3BQV1 296 aa13.11□□□□□ -0.31
CLIP1-209ENST00000537178 IFFO2Q5TF58 517 aa13.11□□□□□ -0.31
CLIP1-209ENST00000537178 GTF2E1P29083 439 aaPredicted RBP13.11□□□□□ -0.31
CLIP1-209ENST00000537178 VPS53Q5VIR6 699 aa13.11□□□□□ -0.31
CLIP1-209ENST00000537178 NCOA1Q15788 1441 aa13.11□□□□□ -0.31
CLIP1-209ENST00000537178 TRHP20396 242 aaPredicted RBP13.11□□□□□ -0.31
CLIP1-209ENST00000537178 SKOR2Q2VWA4 1001 aaPredicted RBP13.11□□□□□ -0.31
CLIP1-209ENST00000537178 TPM2P07951 284 aa13.11□□□□□ -0.31
CLIP1-209ENST00000537178 EHBP1L1Q8N3D4 1523 aa13.11□□□□□ -0.31
CLIP1-209ENST00000537178 BCORL1Q5H9F3 1711 aa13.11□□□□□ -0.31
CLIP1-209ENST00000537178 WASHC2AQ641Q2 1341 aa13.1□□□□□ -0.31
CLIP1-209ENST00000537178 MYOM3Q5VTT5 1437 aa13.1□□□□□ -0.31
CLIP1-209ENST00000537178 TARBP1Q13395 1621 aaKnown RBP13.1□□□□□ -0.31
CLIP1-209ENST00000537178 FAM184AQ8NB25 1140 aa13.1□□□□□ -0.31
CLIP1-209ENST00000537178 DDX49Q9Y6V7 483 aaKnown RBP13.1□□□□□ -0.31
CLIP1-209ENST00000537178 LAMC3Q9Y6N6 1575 aa13.1□□□□□ -0.31
CLIP1-209ENST00000537178 MBD5Q9P267 1494 aa13.1□□□□□ -0.31
CLIP1-209ENST00000537178 AKAP17AQ02040 695 aaKnown RBP13.1□□□□□ -0.31
CLIP1-209ENST00000537178 CPLX2Q6PUV4 134 aaKnown RBP13.1□□□□□ -0.31
CLIP1-209ENST00000537178 CCAR2Q8N163 923 aaKnown RBP13.09□□□□□ -0.31
CLIP1-209ENST00000537178 FANCD2Q9BXW9 1451 aa13.09□□□□□ -0.31
CLIP1-209ENST00000537178 IPO7O95373 1038 aaKnown RBP13.09□□□□□ -0.31
CLIP1-209ENST00000537178 RSPH6AQ9H0K4 717 aa13.09□□□□□ -0.31
CLIP1-209ENST00000537178 CCDC9Q9Y3X0 531 aaKnown RBP13.08□□□□□ -0.31
CLIP1-209ENST00000537178 URB2Q14146 1524 aaKnown RBP13.07□□□□□ -0.32
CLIP1-209ENST00000537178 AMPHP49418 695 aa13.07□□□□□ -0.32
CLIP1-209ENST00000537178 LRRFIP1Q32MZ4 808 aaKnown RBP13.07□□□□□ -0.32
CLIP1-209ENST00000537178 NUP155O75694 1391 aa13.07□□□□□ -0.32
CLIP1-209ENST00000537178 NGDNQ8NEJ9 315 aaKnown RBP13.07□□□□□ -0.32
CLIP1-209ENST00000537178 E9PCH4 1651 aa13.06□□□□□ -0.32
CLIP1-209ENST00000537178 EFCAB2Q5VUJ9 269 aa13.06□□□□□ -0.32
CLIP1-209ENST00000537178 FOXD4L5Q5VV16 416 aaPredicted RBP13.06□□□□□ -0.32
CLIP1-209ENST00000537178 SYNE3Q6ZMZ3 975 aa13.06□□□□□ -0.32
CLIP1-209ENST00000537178 FOXD4L4Q8WXT5 416 aaPredicted RBP13.06□□□□□ -0.32
CLIP1-209ENST00000537178 MPHOSPH9Q99550 1183 aa13.06□□□□□ -0.32
CLIP1-209ENST00000537178 RNF123Q5XPI4 1314 aa13.06□□□□□ -0.32
CLIP1-209ENST00000537178 CCDC184Q52MB2 194 aa13.06□□□□□ -0.32
CLIP1-209ENST00000537178 FMN1Q68DA7 1419 aa13.05□□□□□ -0.32
CLIP1-209ENST00000537178 C11orf95C9JLR9 678 aaPredicted RBP13.05□□□□□ -0.32
CLIP1-209ENST00000537178 ANKRD20A12PQ8NF67 263 aa13.05□□□□□ -0.32
CLIP1-209ENST00000537178 CCDC47Q96A33 483 aaKnown RBP13.05□□□□□ -0.32
CLIP1-209ENST00000537178 CENPQQ7L2Z9 268 aaPredicted RBP13.04□□□□□ -0.32
CLIP1-209ENST00000537178 FOXD1Q16676 465 aa13.04□□□□□ -0.32
CLIP1-209ENST00000537178 ERCC6Q03468 1493 aa13.04□□□□□ -0.32
CLIP1-209ENST00000537178 ANKRD30AQ9BXX3 1397 aa13.03□□□□□ -0.32
CLIP1-209ENST00000537178 FAM161AQ3B820 660 aa13.03□□□□□ -0.32
CLIP1-209ENST00000537178 RILPL2Q969X0 211 aa13.03□□□□□ -0.32
CLIP1-209ENST00000537178 CNTLNQ9NXG0 1405 aa13.03□□□□□ -0.32
CLIP1-209ENST00000537178 CCDC146Q8IYE0 955 aa13.03□□□□□ -0.32
CLIP1-209ENST00000537178 EID1Q9Y6B2 187 aa13.03□□□□□ -0.32
CLIP1-209ENST00000537178 RUFY2Q8WXA3 655 aa13.03□□□□□ -0.32
CLIP1-209ENST00000537178 DNMT1P26358 1616 aaKnown RBP13.02□□□□□ -0.33
CLIP1-209ENST00000537178 WDR62O43379 1518 aa13.02□□□□□ -0.33
CLIP1-209ENST00000537178 DIAPH3Q9NSV4 1193 aa13.02□□□□□ -0.33
CLIP1-209ENST00000537178 ZKSCAN1P17029 563 aaPredicted RBP13.01□□□□□ -0.33
CLIP1-209ENST00000537178 RPRD2Q5VT52 1461 aaKnown RBP13.01□□□□□ -0.33
CLIP1-209ENST00000537178 TRIM29Q14134 588 aa13.01□□□□□ -0.33
CLIP1-209ENST00000537178 REC8O95072 547 aa13.01□□□□□ -0.33
CLIP1-209ENST00000537178 ANKRD45Q5TZF3 282 aa13.01□□□□□ -0.33
CLIP1-209ENST00000537178 MCTP1Q6DN14 999 aa13.01□□□□□ -0.33
CLIP1-209ENST00000537178 GSE1Q14687 1217 aa13.01□□□□□ -0.33
CLIP1-209ENST00000537178 TEX35Q5T0J7 233 aa13□□□□□ -0.33
CLIP1-209ENST00000537178 PBRM1Q86U86 1689 aa13□□□□□ -0.33
CLIP1-209ENST00000537178 CROCC2H7BZ55 1655 aa13□□□□□ -0.33
CLIP1-209ENST00000537178 WWC1Q8IX03 1113 aa13□□□□□ -0.33
CLIP1-209ENST00000537178 AMOTL1Q8IY63 956 aa13□□□□□ -0.33
CLIP1-209ENST00000537178 DHX29Q7Z478 1369 aaKnown RBP13□□□□□ -0.33
CLIP1-209ENST00000537178 ZKSCAN2Q63HK3 967 aa13□□□□□ -0.33
CLIP1-209ENST00000537178 LTV1Q96GA3 475 aaPredicted RBP13□□□□□ -0.33
CLIP1-209ENST00000537178 TCEAL9Q9UHQ7 104 aa13□□□□□ -0.33
CLIP1-209ENST00000537178 CARMIL2Q6F5E8 1435 aa13□□□□□ -0.33
CLIP1-209ENST00000537178 CGNL1Q0VF96 1302 aa12.99□□□□□ -0.33
CLIP1-209ENST00000537178 ZNF771Q7L3S4 317 aaPredicted RBP12.99□□□□□ -0.33
CLIP1-209ENST00000537178 PCMTD1Q96MG8 357 aaPredicted RBP12.99□□□□□ -0.33
CLIP1-209ENST00000537178 HOOK1Q9UJC3 728 aaKnown RBP12.99□□□□□ -0.33
CLIP1-209ENST00000537178 NESP48681 1621 aa12.99□□□□□ -0.33
CLIP1-209ENST00000537178 VSIG10Q8N0Z9 540 aa12.99□□□□□ -0.33
CLIP1-209ENST00000537178 CDR1P51861 262 aa12.99□□□□□ -0.33
CLIP1-209ENST00000537178 KIF3BO15066 747 aa12.98□□□□□ -0.33
CLIP1-209ENST00000537178 PDE4AP27815 886 aa12.98□□□□□ -0.33
CLIP1-209ENST00000537178 RRP12Q5JTH9 1297 aaKnown RBP12.98□□□□□ -0.33
CLIP1-209ENST00000537178 ZNF592Q92610 1267 aa12.98□□□□□ -0.33
CLIP1-209ENST00000537178 KDM5CP41229 1560 aa12.98□□□□□ -0.33
CLIP1-209ENST00000537178 CPLX1O14810 134 aa12.98□□□□□ -0.33
CLIP1-209ENST00000537178 NEXNQ0ZGT2 675 aa12.98□□□□□ -0.33
CLIP1-209ENST00000537178 NOL10Q9BSC4 688 aaKnown RBP12.98□□□□□ -0.33
CLIP1-209ENST00000537178 PATL2C9JE40 543 aaKnown RBP12.98□□□□□ -0.33
CLIP1-209ENST00000537178 HOMER1Q86YM7 354 aa12.97□□□□□ -0.33
CLIP1-209ENST00000537178 ANKRD30BQ9BXX2 1392 aa12.97□□□□□ -0.33
CLIP1-209ENST00000537178 E9PSI1 815 aa12.97□□□□□ -0.33
CLIP1-209ENST00000537178 CALRP27797 417 aaKnown RBP12.97□□□□□ -0.33
CLIP1-209ENST00000537178 FOXD4L6Q3SYB3 417 aaPredicted RBP12.97□□□□□ -0.33
CLIP1-209ENST00000537178 FOXD4L3Q6VB84 417 aaPredicted RBP12.97□□□□□ -0.33
CLIP1-209ENST00000537178 L3MBTL2Q969R5 705 aa12.97□□□□□ -0.33
CLIP1-209ENST00000537178 TEFQ10587 303 aa12.96□□□□□ -0.33
CLIP1-209ENST00000537178 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.96□□□□□ -0.33
CLIP1-209ENST00000537178 MYBBP1AQ9BQG0 1328 aaKnown RBP12.96□□□□□ -0.33
CLIP1-209ENST00000537178 KIF15Q9NS87 1388 aa12.96□□□□□ -0.33
CLIP1-209ENST00000537178 RSPH4AQ5TD94 716 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms