RNA–Protein interactions for RNA: ENST00000534412.5

PICALM-223, Transcript of phosphatidylinositol binding clathrin assembly protein, human

TSL 5

Gene PICALM, Length 811 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PICALM-223	ENST00000534412	KDM2A	Q9Y2K7	1162 aa		11.71	□□□□□ -0.53
PICALM-223	ENST00000534412	NYAP1	Q6ZVC0	841 aa		11.7	□□□□□ -0.54
PICALM-223	ENST00000534412	NUDT18	Q6ZVK8	323 aa		11.7	□□□□□ -0.54
PICALM-223	ENST00000534412	TSR3	Q9UJK0	312 aa	Known RBP	11.69	□□□□□ -0.54
PICALM-223	ENST00000534412	HPS5	Q9UPZ3	1129 aa		11.68	□□□□□ -0.54
PICALM-223	ENST00000534412	URB2	Q14146	1524 aa	Known RBP	11.68	□□□□□ -0.54
PICALM-223	ENST00000534412	TESPA1	A2RU30	521 aa	Predicted RBP	11.66	□□□□□ -0.54
PICALM-223	ENST00000534412	PTGDR	Q13258	359 aa		11.66	□□□□□ -0.54
PICALM-223	ENST00000534412	SAMD7	Q7Z3H4	446 aa		11.66	□□□□□ -0.54
PICALM-223	ENST00000534412	WBP1L	Q9NX94	342 aa		11.66	□□□□□ -0.54
PICALM-223	ENST00000534412	PPP4C	P60510	307 aa		11.65	□□□□□ -0.54
PICALM-223	ENST00000534412	TTC13	Q8NBP0	860 aa		11.65	□□□□□ -0.54
PICALM-223	ENST00000534412	FCHSD2	O94868	740 aa		11.64	□□□□□ -0.55
PICALM-223	ENST00000534412	C3orf80	F5H4A9	247 aa		11.63	□□□□□ -0.55
PICALM-223	ENST00000534412	SLC4A3	P48751	1232 aa		11.63	□□□□□ -0.55
PICALM-223	ENST00000534412	TOP2A	P11388	1531 aa	Known RBP	11.62	□□□□□ -0.55
PICALM-223	ENST00000534412	RNF40	O75150	1001 aa		11.62	□□□□□ -0.55
PICALM-223	ENST00000534412	RIMBP3C	A6NJZ7	1639 aa		11.61	□□□□□ -0.55
PICALM-223	ENST00000534412	RIMBP3B	A6NNM3	1639 aa		11.61	□□□□□ -0.55
PICALM-223	ENST00000534412	RIMBP3	Q9UFD9	1639 aa		11.61	□□□□□ -0.55
PICALM-223	ENST00000534412	RSF1	Q96T23	1441 aa	Predicted RBP	11.6	□□□□□ -0.55
PICALM-223	ENST00000534412	NECTIN2	Q92692	538 aa		11.6	□□□□□ -0.55
PICALM-223	ENST00000534412	TULP1	O00294	542 aa	Predicted RBP	11.59	□□□□□ -0.55
PICALM-223	ENST00000534412	RBM46	Q8TBY0	533 aa	Known RBP	11.59	□□□□□ -0.55
PICALM-223	ENST00000534412	RBM26	Q5T8P6	1007 aa	Known RBP	11.58	□□□□□ -0.56
PICALM-223	ENST00000534412	IFFO2	Q5TF58	517 aa		11.58	□□□□□ -0.56
PICALM-223	ENST00000534412	ARHGEF11	O15085	1522 aa		11.58	□□□□□ -0.56
PICALM-223	ENST00000534412	IFT140	Q96RY7	1462 aa		11.57	□□□□□ -0.56
PICALM-223	ENST00000534412	SLF2	Q8IX21	1173 aa		11.57	□□□□□ -0.56
PICALM-223	ENST00000534412	EYA1	Q99502	592 aa		11.57	□□□□□ -0.56
PICALM-223	ENST00000534412	ZNF608	Q9ULD9	1512 aa	Predicted RBP	11.56	□□□□□ -0.56
PICALM-223	ENST00000534412	HIC1	Q14526	733 aa		11.56	□□□□□ -0.56
PICALM-223	ENST00000534412	SWT1	Q5T5J6	900 aa	Known RBP	11.56	□□□□□ -0.56
PICALM-223	ENST00000534412	ITGBL1	O95965	494 aa	Predicted RBP	11.54	□□□□□ -0.56
PICALM-223	ENST00000534412	DNAJB2	P25686	324 aa		11.54	□□□□□ -0.56
PICALM-223	ENST00000534412	KCNC4	Q03721	635 aa		11.54	□□□□□ -0.56
PICALM-223	ENST00000534412	ADGRG1	Q9Y653	693 aa		11.54	□□□□□ -0.56
PICALM-223	ENST00000534412	PRDM2	Q13029	1718 aa		11.52	□□□□□ -0.57
PICALM-223	ENST00000534412	OAT	P04181	439 aa		11.51	□□□□□ -0.57
PICALM-223	ENST00000534412	TOPBP1	Q92547	1522 aa		11.5	□□□□□ -0.57
PICALM-223	ENST00000534412	GNPAT	O15228	680 aa		11.5	□□□□□ -0.57
PICALM-223	ENST00000534412	FAM161A	Q3B820	660 aa		11.5	□□□□□ -0.57
PICALM-223	ENST00000534412	GPIHBP1	Q8IV16	184 aa		11.5	□□□□□ -0.57
PICALM-223	ENST00000534412	EIF4G3	O43432	1585 aa	Known RBP	11.5	□□□□□ -0.57
PICALM-223	ENST00000534412		A0A0G2JS52	829 aa		11.49	□□□□□ -0.57
PICALM-223	ENST00000534412	RCCD1	A6NED2	376 aa		11.48	□□□□□ -0.57
PICALM-223	ENST00000534412	ABCC8	Q09428	1581 aa		11.47	□□□□□ -0.57
PICALM-223	ENST00000534412	CCDC88B	A6NC98	1476 aa		11.47	□□□□□ -0.57
PICALM-223	ENST00000534412	PRR14	Q9BWN1	585 aa		11.47	□□□□□ -0.57
PICALM-223	ENST00000534412	TMEM134	Q9H6X4	195 aa		11.47	□□□□□ -0.57
PICALM-223	ENST00000534412	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	11.46	□□□□□ -0.57
PICALM-223	ENST00000534412	ARAP1	Q96P48	1450 aa		11.45	□□□□□ -0.58
PICALM-223	ENST00000534412	APLP1	P51693	650 aa		11.45	□□□□□ -0.58
PICALM-223	ENST00000534412	DNMBP	Q6XZF7	1577 aa		11.45	□□□□□ -0.58
PICALM-223	ENST00000534412	RGS20	O76081	388 aa		11.44	□□□□□ -0.58
PICALM-223	ENST00000534412	PXYLP1	Q8TE99	480 aa		11.44	□□□□□ -0.58
PICALM-223	ENST00000534412	IL21	Q9HBE4	155 aa		11.44	□□□□□ -0.58
PICALM-223	ENST00000534412	TARBP1	Q13395	1621 aa	Known RBP	11.43	□□□□□ -0.58
PICALM-223	ENST00000534412	CYB5RL	Q6IPT4	315 aa		11.43	□□□□□ -0.58
PICALM-223	ENST00000534412	MTR	Q99707	1265 aa		11.43	□□□□□ -0.58
PICALM-223	ENST00000534412	RSPH4A	Q5TD94	716 aa		11.42	□□□□□ -0.58
PICALM-223	ENST00000534412	METTL3	Q86U44	580 aa	Known RBP	11.42	□□□□□ -0.58
PICALM-223	ENST00000534412	AQR	O60306	1485 aa	Known RBP eCLIP	11.41	□□□□□ -0.58	3e-9	■■■■■ 34.7
PICALM-223	ENST00000534412	GPR37	O15354	613 aa		11.41	□□□□□ -0.58
PICALM-223	ENST00000534412	FECH	P22830	423 aa		11.41	□□□□□ -0.58
PICALM-223	ENST00000534412	TJAP1	Q5JTD0	557 aa		11.41	□□□□□ -0.58
PICALM-223	ENST00000534412	KMT5B	Q4FZB7	885 aa		11.4	□□□□□ -0.58
PICALM-223	ENST00000534412	CHD1	O14646	1710 aa		11.39	□□□□□ -0.59
PICALM-223	ENST00000534412	POLA1	P09884	1462 aa	Predicted RBP	11.38	□□□□□ -0.59
PICALM-223	ENST00000534412	PCDHB3	Q9Y5E6	796 aa		11.38	□□□□□ -0.59
PICALM-223	ENST00000534412	COPS2	P61201	443 aa		11.37	□□□□□ -0.59
PICALM-223	ENST00000534412	CFH	P08603	1231 aa		11.35	□□□□□ -0.59
PICALM-223	ENST00000534412	CLASP1	Q7Z460	1538 aa		11.35	□□□□□ -0.59
PICALM-223	ENST00000534412	ZNF516	Q92618	1163 aa		11.34	□□□□□ -0.59
PICALM-223	ENST00000534412	WDR97	A6NE52	1622 aa		11.34	□□□□□ -0.59
PICALM-223	ENST00000534412	DAXX	Q9UER7	740 aa	Predicted RBP	11.33	□□□□□ -0.6
PICALM-223	ENST00000534412	ACTN4	O43707	911 aa	Known RBP	11.31	□□□□□ -0.6
PICALM-223	ENST00000534412	SLC10A3	P09131	477 aa		11.31	□□□□□ -0.6
PICALM-223	ENST00000534412	MAP2K5	Q13163	448 aa		11.31	□□□□□ -0.6
PICALM-223	ENST00000534412	RDH13	Q8NBN7	331 aa		11.31	□□□□□ -0.6
PICALM-223	ENST00000534412	SNAPC4	Q5SXM2	1469 aa		11.31	□□□□□ -0.6
PICALM-223	ENST00000534412	RAD54L2	Q9Y4B4	1467 aa		11.31	□□□□□ -0.6
PICALM-223	ENST00000534412	ZPR1	O75312	459 aa		11.3	□□□□□ -0.6
PICALM-223	ENST00000534412	GGCX	P38435	758 aa		11.3	□□□□□ -0.6
PICALM-223	ENST00000534412	SULF1	Q8IWU6	871 aa		11.3	□□□□□ -0.6
PICALM-223	ENST00000534412	TDRD9	Q8NDG6	1382 aa	Known RBP	11.29	□□□□□ -0.6
PICALM-223	ENST00000534412	SOGA1	O94964	1423 aa		11.29	□□□□□ -0.6
PICALM-223	ENST00000534412	DDX11L8	A8MPP1	907 aa		11.29	□□□□□ -0.6
PICALM-223	ENST00000534412	BLOC1S3	Q6QNY0	202 aa		11.29	□□□□□ -0.6
PICALM-223	ENST00000534412	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	11.29	□□□□□ -0.6
PICALM-223	ENST00000534412	MAGI1	Q96QZ7	1491 aa	Predicted RBP	11.29	□□□□□ -0.6
PICALM-223	ENST00000534412	SYNJ1	O43426	1573 aa		11.28	□□□□□ -0.6
PICALM-223	ENST00000534412	PPP1R18	Q6NYC8	613 aa		11.27	□□□□□ -0.61
PICALM-223	ENST00000534412	NLRP7	Q8WX94	980 aa		11.27	□□□□□ -0.61
PICALM-223	ENST00000534412	MINK1	Q8N4C8	1332 aa	Predicted RBP	11.27	□□□□□ -0.61
PICALM-223	ENST00000534412	FGD5	Q6ZNL6	1462 aa		11.26	□□□□□ -0.61
PICALM-223	ENST00000534412	IRF6	O14896	467 aa		11.26	□□□□□ -0.61
PICALM-223	ENST00000534412	NR1I2	O75469	434 aa		11.26	□□□□□ -0.61
PICALM-223	ENST00000534412	LMOD2	Q6P5Q4	547 aa		11.26	□□□□□ -0.61
PICALM-223	ENST00000534412	NKX2-3	Q8TAU0	364 aa		11.26	□□□□□ -0.61

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