RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 LTKP29376 864 aa30.13■■■□□ 2.41
VPS28-212ENST00000530836 EID1Q9Y6B2 187 aa30.13■■■□□ 2.41
VPS28-212ENST00000530836 DMRT2Q9Y5R5 561 aa30.12■■■□□ 2.41
VPS28-212ENST00000530836 HDGFP51858 240 aaKnown RBP30.11■■■□□ 2.41
VPS28-212ENST00000530836 STRCQ7RTU9 1775 aa30.1■■■□□ 2.41
VPS28-212ENST00000530836 ZNF326Q5BKZ1 582 aaKnown RBP30.1■■■□□ 2.41
VPS28-212ENST00000530836 NEURL4Q96JN8 1562 aa30.08■■■□□ 2.41
VPS28-212ENST00000530836 RIMS2Q9UQ26 1411 aa30.07■■■□□ 2.41
VPS28-212ENST00000530836 ZFYVE9O95405 1425 aa30.07■■■□□ 2.4
VPS28-212ENST00000530836 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.07■■■□□ 2.4
VPS28-212ENST00000530836 SCAF11Q99590 1463 aaKnown RBP30.07■■■□□ 2.4
VPS28-212ENST00000530836 STAC3Q96MF2 364 aa30.05■■■□□ 2.4
VPS28-212ENST00000530836 SPATA31E1Q6ZUB1 1445 aa30.05■■■□□ 2.4
VPS28-212ENST00000530836 MED14O60244 1454 aa30.04■■■□□ 2.4
VPS28-212ENST00000530836 MYO5BQ9ULV0 1848 aa30.03■■■□□ 2.4
VPS28-212ENST00000530836 RGL3Q3MIN7 710 aa30.03■■■□□ 2.4
VPS28-212ENST00000530836 DCAF11Q8TEB1 546 aa30.03■■■□□ 2.4
VPS28-212ENST00000530836 RPGRIP1LQ68CZ1 1315 aa30.03■■■□□ 2.4
VPS28-212ENST00000530836 KIF1BO60333 1816 aa30.02■■■□□ 2.4
VPS28-212ENST00000530836 NBPF8Q3BBV2 869 aa30.02■■■□□ 2.4
VPS28-212ENST00000530836 NPHP4O75161 1426 aaPredicted RBP30.01■■■□□ 2.39
VPS28-212ENST00000530836 NUTM2DQ5VT03 806 aaPredicted RBP30.01■■■□□ 2.39
VPS28-212ENST00000530836 POLR1AO95602 1720 aaPredicted RBP29.97■■■□□ 2.39
VPS28-212ENST00000530836 PLEKHG1Q9ULL1 1385 aa29.95■■■□□ 2.38
VPS28-212ENST00000530836 VGFO15240 615 aaPredicted RBP29.94■■■□□ 2.38
VPS28-212ENST00000530836 KDM2AQ9Y2K7 1162 aa29.93■■■□□ 2.38
VPS28-212ENST00000530836 NEXMIFQ5QGS0 1516 aa29.93■■■□□ 2.38
VPS28-212ENST00000530836 RALGAPBQ86X10 1494 aa29.92■■■□□ 2.38
VPS28-212ENST00000530836 EIF4G2P78344 907 aaKnown RBP eCLIP29.92■■■□□ 2.38
VPS28-212ENST00000530836 DIEXFQ68CQ4 756 aaKnown RBP29.92■■■□□ 2.38
VPS28-212ENST00000530836 BCANQ96GW7 911 aa29.92■■■□□ 2.38
VPS28-212ENST00000530836 PRAG1Q86YV5 1406 aa29.91■■■□□ 2.38
VPS28-212ENST00000530836 IQGAP1P46940 1657 aa29.88■■■□□ 2.37
VPS28-212ENST00000530836 SENP3Q9H4L4 574 aaPredicted RBP29.88■■■□□ 2.37
VPS28-212ENST00000530836 SLC26A8Q96RN1 970 aa29.87■■■□□ 2.37
VPS28-212ENST00000530836 TBX22Q9Y458 520 aa29.84■■■□□ 2.37
VPS28-212ENST00000530836 ADGRF5Q8IZF2 1346 aa29.83■■■□□ 2.37
VPS28-212ENST00000530836 HSPA5P11021 654 aaKnown RBP29.82■■■□□ 2.36
VPS28-212ENST00000530836 ADAMTS13Q76LX8 1427 aa29.81■■■□□ 2.36
VPS28-212ENST00000530836 PPLO60437 1756 aa29.8■■■□□ 2.36
VPS28-212ENST00000530836 MYOM2P54296 1465 aa29.8■■■□□ 2.36
VPS28-212ENST00000530836 ZNF335Q9H4Z2 1342 aaPredicted RBP29.79■■■□□ 2.36
VPS28-212ENST00000530836 TRPM1Q7Z4N2 1603 aa29.79■■■□□ 2.36
VPS28-212ENST00000530836 ROCK2O75116 1388 aaKnown RBP29.78■■■□□ 2.36
VPS28-212ENST00000530836 SETBP1Q9Y6X0 1596 aa29.77■■■□□ 2.36
VPS28-212ENST00000530836 CARD11Q9BXL7 1154 aa29.77■■■□□ 2.36
VPS28-212ENST00000530836 GPRASP1Q5JY77 1395 aa29.76■■■□□ 2.35
VPS28-212ENST00000530836 IFT172Q9UG01 1749 aa29.74■■■□□ 2.35
VPS28-212ENST00000530836 USP47Q96K76 1375 aa29.74■■■□□ 2.35
VPS28-212ENST00000530836 LAMC1P11047 1609 aa29.73■■■□□ 2.35
VPS28-212ENST00000530836 NRXN1Q9ULB1 1477 aa29.72■■■□□ 2.35
VPS28-212ENST00000530836 NRXN3Q9Y4C0 1643 aa29.72■■■□□ 2.35
VPS28-212ENST00000530836 KCNA6P17658 529 aa29.71■■■□□ 2.35
VPS28-212ENST00000530836 HIRIP3Q9BW71 556 aaPredicted RBP29.71■■■□□ 2.35
VPS28-212ENST00000530836 DIP2AQ14689 1571 aa29.71■■■□□ 2.35
VPS28-212ENST00000530836 PIK3C2GO75747 1445 aa29.71■■■□□ 2.35
VPS28-212ENST00000530836 PIK3R4Q99570 1358 aa29.7■■■□□ 2.34
VPS28-212ENST00000530836 METP08581 1390 aa29.68■■■□□ 2.34
VPS28-212ENST00000530836 KIAA1210Q9ULL0 1709 aa29.68■■■□□ 2.34
VPS28-212ENST00000530836 C14orf93Q9H972 538 aaKnown RBP29.67■■■□□ 2.34
VPS28-212ENST00000530836 LTBP4Q8N2S1 1624 aa29.67■■■□□ 2.34
VPS28-212ENST00000530836 ALKQ9UM73 1620 aa29.66■■■□□ 2.34
VPS28-212ENST00000530836 CFAP70Q5T0N1 1121 aa29.63■■■□□ 2.33
VPS28-212ENST00000530836 NBPF1Q3BBV0 1214 aa29.63■■■□□ 2.33
VPS28-212ENST00000530836 AMOTL2Q9Y2J4 779 aa29.62■■■□□ 2.33
VPS28-212ENST00000530836 PTPRUQ92729 1446 aa29.61■■■□□ 2.33
VPS28-212ENST00000530836 CPS1P31327 1500 aa29.6■■■□□ 2.33
VPS28-212ENST00000530836 CERKQ8TCT0 537 aa29.59■■■□□ 2.33
VPS28-212ENST00000530836 TMEM132EQ6IEE7 984 aa29.57■■■□□ 2.32
VPS28-212ENST00000530836 STRCP1A6NGW2 1772 aa29.56■■■□□ 2.32
VPS28-212ENST00000530836 NWD1Q149M9 1564 aa29.56■■■□□ 2.32
VPS28-212ENST00000530836 SETD1AO15047 1707 aaKnown RBP29.55■■■□□ 2.32
VPS28-212ENST00000530836 CHD2O14647 1828 aaKnown RBP29.55■■■□□ 2.32
VPS28-212ENST00000530836 PROSER2Q86WR7 435 aaPredicted RBP29.55■■■□□ 2.32
VPS28-212ENST00000530836 WASHC2AQ641Q2 1341 aa29.54■■■□□ 2.32
VPS28-212ENST00000530836 DDX10Q13206 875 aaKnown RBP29.54■■■□□ 2.32
VPS28-212ENST00000530836 NKTRP30414 1462 aaKnown RBP29.53■■■□□ 2.32
VPS28-212ENST00000530836 LRRC7Q96NW7 1537 aa29.53■■■□□ 2.32
VPS28-212ENST00000530836 ST20-MTHFSA0A0A6YYL1 179 aa29.53■■■□□ 2.32
VPS28-212ENST00000530836 CCDC7Q96M83 1385 aa29.52■■■□□ 2.32
VPS28-212ENST00000530836 LRPPRCP42704 1394 aaKnown RBP29.5■■■□□ 2.31
VPS28-212ENST00000530836 EIF3AQ14152 1382 aaKnown RBP29.49■■■□□ 2.31
VPS28-212ENST00000530836 ASXL1Q8IXJ9 1541 aa29.49■■■□□ 2.31
VPS28-212ENST00000530836 STK26Q9P289 416 aa29.49■■■□□ 2.31
VPS28-212ENST00000530836 TMEM94Q12767 1356 aa29.48■■■□□ 2.31
VPS28-212ENST00000530836 ABCC11Q96J66 1382 aa29.48■■■□□ 2.31
VPS28-212ENST00000530836 YTHDC2Q9H6S0 1430 aaKnown RBP29.47■■■□□ 2.31
VPS28-212ENST00000530836 RBM33Q96EV2 1170 aaKnown RBP29.47■■■□□ 2.31
VPS28-212ENST00000530836 XRN1Q8IZH2 1706 aaKnown RBP29.46■■■□□ 2.31
VPS28-212ENST00000530836 C11orf95C9JLR9 678 aaPredicted RBP29.45■■■□□ 2.31
VPS28-212ENST00000530836 KIF7Q2M1P5 1343 aa29.45■■■□□ 2.31
VPS28-212ENST00000530836 ADGRB1O14514 1584 aa29.45■■■□□ 2.31
VPS28-212ENST00000530836 SLC24A1O60721 1099 aa29.45■■■□□ 2.3
VPS28-212ENST00000530836 IQSEC2Q5JU85 1478 aa29.44■■■□□ 2.3
VPS28-212ENST00000530836 ROBO2Q9HCK4 1378 aa29.44■■■□□ 2.3
VPS28-212ENST00000530836 TECPR2O15040 1411 aa29.43■■■□□ 2.3
VPS28-212ENST00000530836 PTCH1Q13635 1447 aa29.43■■■□□ 2.3
VPS28-212ENST00000530836 SIRT1Q96EB6 747 aa29.42■■■□□ 2.3
VPS28-212ENST00000530836 NCOA3Q9Y6Q9 1424 aa29.42■■■□□ 2.3
VPS28-212ENST00000530836 MIER1Q8N108 512 aa29.4■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms