RNA–Protein interactions for RNA: ENST00000527020.5

USH1C-205, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,159 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-205ENST00000527020 CFAP74Q9C0B2 1584 aa23.64■■□□□ 1.37
USH1C-205ENST00000527020 ZMYM4Q5VZL5 1548 aa23.62■■□□□ 1.37
USH1C-205ENST00000527020 FRMPD1Q5SYB0 1578 aa23.62■■□□□ 1.37
USH1C-205ENST00000527020 OSCARQ8IYS5 282 aa23.62■■□□□ 1.37
USH1C-205ENST00000527020 BLMP54132 1417 aaPredicted RBP23.61■■□□□ 1.37
USH1C-205ENST00000527020 POGZQ7Z3K3 1410 aa23.61■■□□□ 1.37
USH1C-205ENST00000527020 INSRP06213 1382 aa23.61■■□□□ 1.37
USH1C-205ENST00000527020 CD109Q6YHK3 1445 aa23.6■■□□□ 1.37
USH1C-205ENST00000527020 NPM1P06748 294 aaKnown RBP eCLIP23.58■■□□□ 1.36
USH1C-205ENST00000527020 KDM5AP29375 1690 aaKnown RBP23.57■■□□□ 1.36
USH1C-205ENST00000527020 MLH3Q9UHC1 1453 aa23.57■■□□□ 1.36
USH1C-205ENST00000527020 MYT1Q01538 1121 aa23.57■■□□□ 1.36
USH1C-205ENST00000527020 HECW2Q9P2P5 1572 aa23.57■■□□□ 1.36
USH1C-205ENST00000527020 NRXN1Q9ULB1 1477 aa23.57■■□□□ 1.36
USH1C-205ENST00000527020 ADGRF5Q8IZF2 1346 aa23.57■■□□□ 1.36
USH1C-205ENST00000527020 EIF3AQ14152 1382 aaKnown RBP23.56■■□□□ 1.36
USH1C-205ENST00000527020 ADGRB3O60242 1522 aa23.55■■□□□ 1.36
USH1C-205ENST00000527020 CFAP65Q6ZU64 1925 aaKnown RBP23.55■■□□□ 1.36
USH1C-205ENST00000527020 CDCA8Q53HL2 280 aa23.55■■□□□ 1.36
USH1C-205ENST00000527020 AMER1Q5JTC6 1135 aaPredicted RBP23.55■■□□□ 1.36
USH1C-205ENST00000527020 CFAP70Q5T0N1 1121 aa23.55■■□□□ 1.36
USH1C-205ENST00000527020 PDE3BQ13370 1112 aa23.53■■□□□ 1.36
USH1C-205ENST00000527020 SALL2Q9Y467 1007 aaPredicted RBP23.53■■□□□ 1.36
USH1C-205ENST00000527020 ASXL1Q8IXJ9 1541 aa23.53■■□□□ 1.36
USH1C-205ENST00000527020 MYO3AQ8NEV4 1616 aa23.52■■□□□ 1.36
USH1C-205ENST00000527020 NPATQ14207 1427 aa23.51■■□□□ 1.35
USH1C-205ENST00000527020 KNSTRNQ9Y448 316 aa23.51■■□□□ 1.35
USH1C-205ENST00000527020 ERVK-7P63135 1459 aa23.51■■□□□ 1.35
USH1C-205ENST00000527020 PPLO60437 1756 aa23.51■■□□□ 1.35
USH1C-205ENST00000527020 PPP2R1AP30153 589 aa23.5■■□□□ 1.35
USH1C-205ENST00000527020 CDCA7LQ96GN5 454 aa23.48■■□□□ 1.35
USH1C-205ENST00000527020 RRP1P56182 461 aaKnown RBP23.47■■□□□ 1.35
USH1C-205ENST00000527020 NOS1P29475 1434 aa23.47■■□□□ 1.35
USH1C-205ENST00000527020 SETBP1Q9Y6X0 1596 aa23.47■■□□□ 1.35
USH1C-205ENST00000527020 ABCC3O15438 1527 aa23.47■■□□□ 1.35
USH1C-205ENST00000527020 NPC1L1Q9UHC9 1359 aa23.47■■□□□ 1.35
USH1C-205ENST00000527020 ANP32EQ9BTT0 268 aa23.47■■□□□ 1.35
USH1C-205ENST00000527020 RCAN3Q9UKA8 241 aa23.47■■□□□ 1.35
USH1C-205ENST00000527020 FANCIQ9NVI1 1328 aa23.46■■□□□ 1.35
USH1C-205ENST00000527020 SIGLEC1Q9BZZ2 1709 aa23.45■■□□□ 1.34
USH1C-205ENST00000527020 CCDC136Q96JN2 1154 aa23.44■■□□□ 1.34
USH1C-205ENST00000527020 ADAMTS8Q9UP79 889 aa23.44■■□□□ 1.34
USH1C-205ENST00000527020 NEO1Q92859 1461 aa23.44■■□□□ 1.34
USH1C-205ENST00000527020 CAMSAP1Q5T5Y3 1602 aa23.44■■□□□ 1.34
USH1C-205ENST00000527020 PIK3C2GO75747 1445 aa23.43■■□□□ 1.34
USH1C-205ENST00000527020 ZC3H13Q5T200 1668 aaKnown RBP23.43■■□□□ 1.34
USH1C-205ENST00000527020 GGT6Q6P531 493 aa23.42■■□□□ 1.34
USH1C-205ENST00000527020 MSH5O43196 834 aa23.42■■□□□ 1.34
USH1C-205ENST00000527020 SBNO2Q9Y2G9 1366 aa23.41■■□□□ 1.34
USH1C-205ENST00000527020 DIP2CQ9Y2E4 1556 aa23.41■■□□□ 1.34
USH1C-205ENST00000527020 RICTORQ6R327 1708 aa23.4■■□□□ 1.34
USH1C-205ENST00000527020 ADGRB1O14514 1584 aa23.4■■□□□ 1.34
USH1C-205ENST00000527020 SLC24A1O60721 1099 aa23.39■■□□□ 1.33
USH1C-205ENST00000527020 PIK3C2BO00750 1634 aa23.39■■□□□ 1.33
USH1C-205ENST00000527020 RAPGEF3O95398 923 aa23.38■■□□□ 1.33
USH1C-205ENST00000527020 CHGAP10645 457 aaKnown RBP23.38■■□□□ 1.33
USH1C-205ENST00000527020 QRICH2Q9H0J4 1663 aa23.37■■□□□ 1.33
USH1C-205ENST00000527020 EXOC6Q8TAG9 804 aa23.36■■□□□ 1.33
USH1C-205ENST00000527020 CARD14Q9BXL6 1004 aa23.36■■□□□ 1.33
USH1C-205ENST00000527020 PLEKHH1Q9ULM0 1364 aa23.35■■□□□ 1.33
USH1C-205ENST00000527020 C14orf93Q9H972 538 aaKnown RBP23.35■■□□□ 1.33
USH1C-205ENST00000527020 WDR43Q15061 677 aaKnown RBP eCLIP23.34■■□□□ 1.33
USH1C-205ENST00000527020 CENPJQ9HC77 1338 aaPredicted RBP23.34■■□□□ 1.33
USH1C-205ENST00000527020 RPGRIP1LQ68CZ1 1315 aa23.31■■□□□ 1.32
USH1C-205ENST00000527020 ZNF521Q96K83 1311 aa23.31■■□□□ 1.32
USH1C-205ENST00000527020 NEXMIFQ5QGS0 1516 aa23.3■■□□□ 1.32
USH1C-205ENST00000527020 TRAK1Q9UPV9 953 aa23.3■■□□□ 1.32
USH1C-205ENST00000527020 GLI2P10070 1586 aa23.28■■□□□ 1.32
USH1C-205ENST00000527020 ARHGAP31Q2M1Z3 1444 aa23.27■■□□□ 1.32
USH1C-205ENST00000527020 ARHGEF28Q8N1W1 1705 aaKnown RBP23.27■■□□□ 1.32
USH1C-205ENST00000527020 TMEM132EQ6IEE7 984 aa23.27■■□□□ 1.32
USH1C-205ENST00000527020 YEATS2Q9ULM3 1422 aa23.26■■□□□ 1.31
USH1C-205ENST00000527020 PLIN1O60240 522 aa23.25■■□□□ 1.31
USH1C-205ENST00000527020 DUSP27Q5VZP5 1158 aa23.25■■□□□ 1.31
USH1C-205ENST00000527020 MYO5BQ9ULV0 1848 aa23.24■■□□□ 1.31
USH1C-205ENST00000527020 NSD3Q9BZ95 1437 aa23.21■■□□□ 1.31
USH1C-205ENST00000527020 CCDC146Q8IYE0 955 aa23.21■■□□□ 1.31
USH1C-205ENST00000527020 USP32Q8NFA0 1604 aa23.21■■□□□ 1.31
USH1C-205ENST00000527020 PREX1Q8TCU6 1659 aa23.2■■□□□ 1.31
USH1C-205ENST00000527020 SHPRHQ149N8 1683 aa23.2■■□□□ 1.3
USH1C-205ENST00000527020 GOLGA2Q08379 1002 aa23.2■■□□□ 1.3
USH1C-205ENST00000527020 SLC12A5Q9H2X9 1139 aa23.2■■□□□ 1.3
USH1C-205ENST00000527020 NUTM2DQ5VT03 806 aaPredicted RBP23.19■■□□□ 1.3
USH1C-205ENST00000527020 TULP4Q9NRJ4 1543 aa23.19■■□□□ 1.3
USH1C-205ENST00000527020 IDI1Q13907 227 aa23.18■■□□□ 1.3
USH1C-205ENST00000527020 CRBNQ96SW2 442 aa23.18■■□□□ 1.3
USH1C-205ENST00000527020 POLR3AO14802 1390 aaPredicted RBP23.18■■□□□ 1.3
USH1C-205ENST00000527020 VGFO15240 615 aaPredicted RBP23.17■■□□□ 1.3
USH1C-205ENST00000527020 SLFN5Q08AF3 891 aa23.17■■□□□ 1.3
USH1C-205ENST00000527020 TRMT2AQ8IZ69 625 aaKnown RBP23.17■■□□□ 1.3
USH1C-205ENST00000527020 TMEM131LA2VDJ0 1609 aa23.16■■□□□ 1.3
USH1C-205ENST00000527020 APAF1O14727 1248 aa23.16■■□□□ 1.3
USH1C-205ENST00000527020 ZFYVE9O95405 1425 aa23.15■■□□□ 1.3
USH1C-205ENST00000527020 C20orf194Q5TEA3 1177 aa23.15■■□□□ 1.3
USH1C-205ENST00000527020 SPINK5Q9NQ38 1064 aaPredicted RBP23.13■■□□□ 1.29
USH1C-205ENST00000527020 SLC52A1Q9NWF4 448 aa23.12■■□□□ 1.29
USH1C-205ENST00000527020 PUS7Q96PZ0 661 aaKnown RBP23.11■■□□□ 1.29
USH1C-205ENST00000527020 CYB5RLQ6IPT4 315 aa23.1■■□□□ 1.29
USH1C-205ENST00000527020 MORC1Q86VD1 984 aa23.1■■□□□ 1.29
USH1C-205ENST00000527020 DIP2BQ9P265 1576 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms