RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 PPP1R15AO75807 674 aaPredicted RBP30.91■■■□□ 2.54
VPS28-206ENST00000526734 TRPM2O94759 1503 aa30.9■■■□□ 2.54
VPS28-206ENST00000526734 MYO5BQ9ULV0 1848 aa30.89■■■□□ 2.54
VPS28-206ENST00000526734 LRRC7Q96NW7 1537 aa30.89■■■□□ 2.54
VPS28-206ENST00000526734 STRCP1A6NGW2 1772 aa30.87■■■□□ 2.53
VPS28-206ENST00000526734 TOM1O60784 492 aa30.86■■■□□ 2.53
VPS28-206ENST00000526734 SLC4A1APQ9BWU0 796 aaKnown RBP30.86■■■□□ 2.53
VPS28-206ENST00000526734 BCANQ96GW7 911 aa30.84■■■□□ 2.53
VPS28-206ENST00000526734 KCNA6P17658 529 aa30.83■■■□□ 2.53
VPS28-206ENST00000526734 SLC26A8Q96RN1 970 aa30.83■■■□□ 2.53
VPS28-206ENST00000526734 NKTRP30414 1462 aaKnown RBP30.8■■■□□ 2.52
VPS28-206ENST00000526734 CLTCL1P53675 1640 aa30.8■■■□□ 2.52
VPS28-206ENST00000526734 DIP2AQ14689 1571 aa30.79■■■□□ 2.52
VPS28-206ENST00000526734 NWD1Q149M9 1564 aa30.79■■■□□ 2.52
VPS28-206ENST00000526734 TBX22Q9Y458 520 aa30.78■■■□□ 2.52
VPS28-206ENST00000526734 SETD5Q9C0A6 1442 aa30.76■■■□□ 2.51
VPS28-206ENST00000526734 PIK3R4Q99570 1358 aa30.74■■■□□ 2.51
VPS28-206ENST00000526734 ZNF326Q5BKZ1 582 aaKnown RBP30.73■■■□□ 2.51
VPS28-206ENST00000526734 ADAMTS13Q76LX8 1427 aa30.73■■■□□ 2.51
VPS28-206ENST00000526734 KIF1BO60333 1816 aa30.7■■■□□ 2.51
VPS28-206ENST00000526734 TMEM94Q12767 1356 aa30.69■■■□□ 2.5
VPS28-206ENST00000526734 NUTM2DQ5VT03 806 aaPredicted RBP30.69■■■□□ 2.5
VPS28-206ENST00000526734 MPHOSPH9Q99550 1183 aa30.68■■■□□ 2.5
VPS28-206ENST00000526734 SCAF1Q9H7N4 1312 aaKnown RBP30.68■■■□□ 2.5
VPS28-206ENST00000526734 SETBP1Q9Y6X0 1596 aa30.67■■■□□ 2.5
VPS28-206ENST00000526734 ALKQ9UM73 1620 aa30.67■■■□□ 2.5
VPS28-206ENST00000526734 PROSER2Q86WR7 435 aaPredicted RBP30.67■■■□□ 2.5
VPS28-206ENST00000526734 NEXMIFQ5QGS0 1516 aa30.67■■■□□ 2.5
VPS28-206ENST00000526734 PIP4K2BP78356 416 aa30.66■■■□□ 2.5
VPS28-206ENST00000526734 CHD2O14647 1828 aaKnown RBP30.66■■■□□ 2.5
VPS28-206ENST00000526734 RPGRIP1LQ68CZ1 1315 aa30.64■■■□□ 2.5
VPS28-206ENST00000526734 XIRP1Q702N8 1843 aaKnown RBP30.63■■■□□ 2.49
VPS28-206ENST00000526734 CCDC144AA2RUR9 1427 aa30.63■■■□□ 2.49
VPS28-206ENST00000526734 RAB3GAP2Q9H2M9 1393 aa30.62■■■□□ 2.49
VPS28-206ENST00000526734 NCOA3Q9Y6Q9 1424 aa30.62■■■□□ 2.49
VPS28-206ENST00000526734 SENP3Q9H4L4 574 aaPredicted RBP30.61■■■□□ 2.49
VPS28-206ENST00000526734 NRXN3Q9Y4C0 1643 aa30.59■■■□□ 2.49
VPS28-206ENST00000526734 VGFO15240 615 aaPredicted RBP30.59■■■□□ 2.49
VPS28-206ENST00000526734 MSH6P52701 1360 aa30.57■■■□□ 2.48
VPS28-206ENST00000526734 FOXD1Q16676 465 aa30.57■■■□□ 2.48
VPS28-206ENST00000526734 HRCP23327 699 aa30.55■■■□□ 2.48
VPS28-206ENST00000526734 HSPA1LP34931 641 aa30.53■■■□□ 2.48
VPS28-206ENST00000526734 AMOTL2Q9Y2J4 779 aa30.51■■■□□ 2.47
VPS28-206ENST00000526734 FAM135BQ49AJ0 1406 aa30.5■■■□□ 2.47
VPS28-206ENST00000526734 PTPRUQ92729 1446 aa30.5■■■□□ 2.47
VPS28-206ENST00000526734 SPATA31E1Q6ZUB1 1445 aa30.49■■■□□ 2.47
VPS28-206ENST00000526734 XRN1Q8IZH2 1706 aaKnown RBP30.49■■■□□ 2.47
VPS28-206ENST00000526734 PPLO60437 1756 aa30.47■■■□□ 2.47
VPS28-206ENST00000526734 RBM33Q96EV2 1170 aaKnown RBP30.47■■■□□ 2.47
VPS28-206ENST00000526734 METP08581 1390 aa30.46■■■□□ 2.47
VPS28-206ENST00000526734 ANKRD30BQ9BXX2 1392 aa30.46■■■□□ 2.47
VPS28-206ENST00000526734 C14orf37Q86TY3 774 aa30.43■■■□□ 2.46
VPS28-206ENST00000526734 C19orf44Q9H6X5 657 aa30.42■■■□□ 2.46
VPS28-206ENST00000526734 DCCP43146 1447 aa30.4■■■□□ 2.46
VPS28-206ENST00000526734 DISP3Q9P2K9 1392 aa30.4■■■□□ 2.46
VPS28-206ENST00000526734 CADPS2Q86UW7 1296 aa30.39■■■□□ 2.46
VPS28-206ENST00000526734 PRAG1Q86YV5 1406 aa30.39■■■□□ 2.45
VPS28-206ENST00000526734 SLAIN2Q9P270 581 aa30.38■■■□□ 2.45
VPS28-206ENST00000526734 SETD1AO15047 1707 aaKnown RBP30.37■■■□□ 2.45
VPS28-206ENST00000526734 RGL3Q3MIN7 710 aa30.37■■■□□ 2.45
VPS28-206ENST00000526734 PTCH1Q13635 1447 aa30.37■■■□□ 2.45
VPS28-206ENST00000526734 IFT172Q9UG01 1749 aa30.36■■■□□ 2.45
VPS28-206ENST00000526734 ATF3P18847 181 aa30.35■■■□□ 2.45
VPS28-206ENST00000526734 ROBO1Q9Y6N7 1651 aa30.35■■■□□ 2.45
VPS28-206ENST00000526734 SIPA1L2Q9P2F8 1722 aaPredicted RBP30.33■■■□□ 2.45
VPS28-206ENST00000526734 ADGRF5Q8IZF2 1346 aa30.32■■■□□ 2.44
VPS28-206ENST00000526734 ADGRL3Q9HAR2 1447 aa30.3■■■□□ 2.44
VPS28-206ENST00000526734 MYOM2P54296 1465 aa30.29■■■□□ 2.44
VPS28-206ENST00000526734 PIK3C2GO75747 1445 aa30.29■■■□□ 2.44
VPS28-206ENST00000526734 MED1Q15648 1581 aaPredicted RBP30.26■■■□□ 2.43
VPS28-206ENST00000526734 NRXN1Q9ULB1 1477 aa30.24■■■□□ 2.43
VPS28-206ENST00000526734 ROBO2Q9HCK4 1378 aa30.23■■■□□ 2.43
VPS28-206ENST00000526734 TECPR2O15040 1411 aa30.22■■■□□ 2.43
VPS28-206ENST00000526734 STAC3Q96MF2 364 aa30.2■■■□□ 2.43
VPS28-206ENST00000526734 LAMC1P11047 1609 aa30.2■■■□□ 2.43
VPS28-206ENST00000526734 LRPPRCP42704 1394 aaKnown RBP30.19■■■□□ 2.42
VPS28-206ENST00000526734 MST1RQ04912 1400 aa30.19■■■□□ 2.42
VPS28-206ENST00000526734 NALCNQ8IZF0 1738 aa30.19■■■□□ 2.42
VPS28-206ENST00000526734 AHDC1Q5TGY3 1603 aaPredicted RBP30.17■■■□□ 2.42
VPS28-206ENST00000526734 ABCC11Q96J66 1382 aa30.16■■■□□ 2.42
VPS28-206ENST00000526734 PHLPP1O60346 1717 aa30.16■■■□□ 2.42
VPS28-206ENST00000526734 C14orf93Q9H972 538 aaKnown RBP30.16■■■□□ 2.42
VPS28-206ENST00000526734 ASXL1Q8IXJ9 1541 aa30.15■■■□□ 2.42
VPS28-206ENST00000526734 BRINP3Q76B58 766 aa30.14■■■□□ 2.42
VPS28-206ENST00000526734 KNDC1Q76NI1 1749 aa30.13■■■□□ 2.41
VPS28-206ENST00000526734 JCADQ9P266 1359 aa30.12■■■□□ 2.41
VPS28-206ENST00000526734 YTHDC2Q9H6S0 1430 aaKnown RBP30.12■■■□□ 2.41
VPS28-206ENST00000526734 COL16A1Q07092 1604 aaPredicted RBP30.11■■■□□ 2.41
VPS28-206ENST00000526734 DHX57Q6P158 1386 aaKnown RBP30.09■■■□□ 2.41
VPS28-206ENST00000526734 SIRT1Q96EB6 747 aa30.09■■■□□ 2.41
VPS28-206ENST00000526734 CDC42BPGQ6DT37 1551 aa30.08■■■□□ 2.41
VPS28-206ENST00000526734 PHF23Q9BUL5 403 aaPredicted RBP30.08■■■□□ 2.41
VPS28-206ENST00000526734 TMEM132EQ6IEE7 984 aa30.07■■■□□ 2.4
VPS28-206ENST00000526734 STK26Q9P289 416 aa30.07■■■□□ 2.4
VPS28-206ENST00000526734 C1orf167Q5SNV9 1468 aa30.06■■■□□ 2.4
VPS28-206ENST00000526734 CFAP70Q5T0N1 1121 aa30.06■■■□□ 2.4
VPS28-206ENST00000526734 DCAF11Q8TEB1 546 aa30.05■■■□□ 2.4
VPS28-206ENST00000526734 ILDR2Q71H61 639 aa30.02■■■□□ 2.4
VPS28-206ENST00000526734 NHSL1Q5SYE7 1610 aa30.02■■■□□ 2.4
VPS28-206ENST00000526734 SPATA31A6Q5VVP1 1343 aa30■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms