RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 SYNMO15061 1565 aa28.27■■■□□ 2.12
VPS28-205ENST00000526204 KIAA1210Q9ULL0 1709 aa28.27■■■□□ 2.12
VPS28-205ENST00000526204 SALL2Q9Y467 1007 aaPredicted RBP28.25■■■□□ 2.11
VPS28-205ENST00000526204 MROH1Q8NDA8 1641 aa28.23■■■□□ 2.11
VPS28-205ENST00000526204 MYOM2P54296 1465 aa28.23■■■□□ 2.11
VPS28-205ENST00000526204 AMER1Q5JTC6 1135 aaPredicted RBP28.22■■■□□ 2.11
VPS28-205ENST00000526204 NPC1L1Q9UHC9 1359 aa28.21■■■□□ 2.11
VPS28-205ENST00000526204 PPP2R1AP30153 589 aa28.19■■■□□ 2.1
VPS28-205ENST00000526204 EFCAB6Q5THR3 1501 aa28.19■■■□□ 2.1
VPS28-205ENST00000526204 ZNF518AQ6AHZ1 1483 aa28.19■■■□□ 2.1
VPS28-205ENST00000526204 ASXL1Q8IXJ9 1541 aa28.18■■■□□ 2.1
VPS28-205ENST00000526204 LMTK2Q8IWU2 1503 aa28.17■■■□□ 2.1
VPS28-205ENST00000526204 ERICH6Q7L0X2 663 aa28.17■■■□□ 2.1
VPS28-205ENST00000526204 CDCA7LQ96GN5 454 aa28.17■■■□□ 2.1
VPS28-205ENST00000526204 MAP3K4Q9Y6R4 1608 aa28.17■■■□□ 2.1
VPS28-205ENST00000526204 ADAMTS8Q9UP79 889 aa28.15■■■□□ 2.1
VPS28-205ENST00000526204 WDR43Q15061 677 aaKnown RBP eCLIP28.14■■■□□ 2.1
VPS28-205ENST00000526204 KIDINS220Q9ULH0 1771 aa28.14■■■□□ 2.1
VPS28-205ENST00000526204 PIK3C2GO75747 1445 aa28.14■■■□□ 2.09
VPS28-205ENST00000526204 NPM1P06748 294 aaKnown RBP eCLIP28.13■■■□□ 2.09
VPS28-205ENST00000526204 EXOC6Q8TAG9 804 aa28.13■■■□□ 2.09
VPS28-205ENST00000526204 CFAP70Q5T0N1 1121 aa28.12■■■□□ 2.09
VPS28-205ENST00000526204 KIF1BO60333 1816 aa28.11■■■□□ 2.09
VPS28-205ENST00000526204 KDM5AP29375 1690 aaKnown RBP28.1■■■□□ 2.09
VPS28-205ENST00000526204 ADGRF5Q8IZF2 1346 aa28.1■■■□□ 2.09
VPS28-205ENST00000526204 UGGT1Q9NYU2 1555 aa28.1■■■□□ 2.09
VPS28-205ENST00000526204 MYOM1P52179 1685 aa28.09■■■□□ 2.09
VPS28-205ENST00000526204 ABCA6Q8N139 1617 aa28.09■■■□□ 2.09
VPS28-205ENST00000526204 NRXN1Q9ULB1 1477 aa28.09■■■□□ 2.09
VPS28-205ENST00000526204 PPRC1Q5VV67 1664 aaKnown RBP28.08■■■□□ 2.09
VPS28-205ENST00000526204 CFAP74Q9C0B2 1584 aa28.07■■■□□ 2.08
VPS28-205ENST00000526204 SBNO2Q9Y2G9 1366 aa28.05■■■□□ 2.08
VPS28-205ENST00000526204 IFT172Q9UG01 1749 aa28.05■■■□□ 2.08
VPS28-205ENST00000526204 ERVK-7P63135 1459 aa28.05■■■□□ 2.08
VPS28-205ENST00000526204 MLH3Q9UHC1 1453 aa28.04■■■□□ 2.08
VPS28-205ENST00000526204 POGZQ7Z3K3 1410 aa28.03■■■□□ 2.08
VPS28-205ENST00000526204 CD109Q6YHK3 1445 aa28.03■■■□□ 2.08
VPS28-205ENST00000526204 ADGRB3O60242 1522 aa28.02■■■□□ 2.08
VPS28-205ENST00000526204 TCERG1O14776 1098 aaKnown RBP28■■■□□ 2.07
VPS28-205ENST00000526204 MYO3AQ8NEV4 1616 aa28■■■□□ 2.07
VPS28-205ENST00000526204 SETBP1Q9Y6X0 1596 aa28■■■□□ 2.07
VPS28-205ENST00000526204 ZNF521Q96K83 1311 aa28■■■□□ 2.07
VPS28-205ENST00000526204 MROH2AA6NES4 1674 aa27.98■■■□□ 2.07
VPS28-205ENST00000526204 PLEKHH1Q9ULM0 1364 aa27.98■■■□□ 2.07
VPS28-205ENST00000526204 GOLGA2Q08379 1002 aa27.97■■■□□ 2.07
VPS28-205ENST00000526204 NOS1P29475 1434 aa27.97■■■□□ 2.07
VPS28-205ENST00000526204 ANP32AP39687 249 aaKnown RBP27.97■■■□□ 2.07
VPS28-205ENST00000526204 NPATQ14207 1427 aa27.96■■■□□ 2.07
VPS28-205ENST00000526204 DUSP27Q5VZP5 1158 aa27.95■■■□□ 2.07
VPS28-205ENST00000526204 RPGRIP1LQ68CZ1 1315 aa27.95■■■□□ 2.06
VPS28-205ENST00000526204 CENPJQ9HC77 1338 aaPredicted RBP27.95■■■□□ 2.06
VPS28-205ENST00000526204 HECW2Q9P2P5 1572 aa27.94■■■□□ 2.06
VPS28-205ENST00000526204 PLIN1O60240 522 aa27.94■■■□□ 2.06
VPS28-205ENST00000526204 FRMPD1Q5SYB0 1578 aa27.94■■■□□ 2.06
VPS28-205ENST00000526204 MS4A1P11836 297 aa27.93■■■□□ 2.06
VPS28-205ENST00000526204 NOP58Q9Y2X3 529 aaKnown RBP27.93■■■□□ 2.06
VPS28-205ENST00000526204 CHGAP10645 457 aaKnown RBP27.92■■■□□ 2.06
VPS28-205ENST00000526204 NGEFQ8N5V2 710 aa27.92■■■□□ 2.06
VPS28-205ENST00000526204 CARD14Q9BXL6 1004 aa27.92■■■□□ 2.06
VPS28-205ENST00000526204 C14orf93Q9H972 538 aaKnown RBP27.92■■■□□ 2.06
VPS28-205ENST00000526204 GGT6Q6P531 493 aa27.91■■■□□ 2.06
VPS28-205ENST00000526204 CRBNQ96SW2 442 aa27.91■■■□□ 2.06
VPS28-205ENST00000526204 IPO9Q96P70 1041 aaKnown RBP27.88■■■□□ 2.05
VPS28-205ENST00000526204 SLFN5Q08AF3 891 aa27.88■■■□□ 2.05
VPS28-205ENST00000526204 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.88■■■□□ 2.05
VPS28-205ENST00000526204 ABCC3O15438 1527 aa27.87■■■□□ 2.05
VPS28-205ENST00000526204 NEO1Q92859 1461 aa27.86■■■□□ 2.05
VPS28-205ENST00000526204 PPLO60437 1756 aa27.86■■■□□ 2.05
VPS28-205ENST00000526204 TRMT2AQ8IZ69 625 aaKnown RBP27.86■■■□□ 2.05
VPS28-205ENST00000526204 POLR3AO14802 1390 aaPredicted RBP27.83■■■□□ 2.05
VPS28-205ENST00000526204 TRAK1Q9UPV9 953 aa27.83■■■□□ 2.05
VPS28-205ENST00000526204 ADGRB1O14514 1584 aa27.83■■■□□ 2.05
VPS28-205ENST00000526204 APAF1O14727 1248 aa27.82■■■□□ 2.04
VPS28-205ENST00000526204 CCDC146Q8IYE0 955 aa27.82■■■□□ 2.04
VPS28-205ENST00000526204 PDE4AP27815 886 aa27.8■■■□□ 2.04
VPS28-205ENST00000526204 C20orf194Q5TEA3 1177 aa27.79■■■□□ 2.04
VPS28-205ENST00000526204 PUS7Q96PZ0 661 aaKnown RBP27.79■■■□□ 2.04
VPS28-205ENST00000526204 E9PSI1 815 aa27.79■■■□□ 2.04
VPS28-205ENST00000526204 BACH2Q9BYV9 841 aa27.78■■■□□ 2.04
VPS28-205ENST00000526204 VGFO15240 615 aaPredicted RBP27.77■■■□□ 2.04
VPS28-205ENST00000526204 NKTRP30414 1462 aaKnown RBP27.77■■■□□ 2.04
VPS28-205ENST00000526204 NSD3Q9BZ95 1437 aa27.77■■■□□ 2.04
VPS28-205ENST00000526204 CAMSAP1Q5T5Y3 1602 aa27.77■■■□□ 2.04
VPS28-205ENST00000526204 ZC3H13Q5T200 1668 aaKnown RBP27.76■■■□□ 2.04
VPS28-205ENST00000526204 QRICH2Q9H0J4 1663 aa27.76■■■□□ 2.04
VPS28-205ENST00000526204 ZBTB47Q9UFB7 747 aaPredicted RBP27.76■■■□□ 2.03
VPS28-205ENST00000526204 MORC1Q86VD1 984 aa27.76■■■□□ 2.03
VPS28-205ENST00000526204 ARHGAP31Q2M1Z3 1444 aa27.74■■■□□ 2.03
VPS28-205ENST00000526204 CYB5RLQ6IPT4 315 aa27.74■■■□□ 2.03
VPS28-205ENST00000526204 PAK3O75914 559 aaPredicted RBP27.74■■■□□ 2.03
VPS28-205ENST00000526204 TMEM132EQ6IEE7 984 aa27.74■■■□□ 2.03
VPS28-205ENST00000526204 RAPGEF3O95398 923 aa27.73■■■□□ 2.03
VPS28-205ENST00000526204 CENPQQ7L2Z9 268 aaPredicted RBP27.73■■■□□ 2.03
VPS28-205ENST00000526204 PIK3C2BO00750 1634 aa27.73■■■□□ 2.03
VPS28-205ENST00000526204 SLC12A5Q9H2X9 1139 aa27.73■■■□□ 2.03
VPS28-205ENST00000526204 KDM2BQ8NHM5 1336 aa27.72■■■□□ 2.03
VPS28-205ENST00000526204 EVC2Q86UK5 1308 aa27.7■■■□□ 2.03
VPS28-205ENST00000526204 DIP2CQ9Y2E4 1556 aa27.7■■■□□ 2.02
VPS28-205ENST00000526204 CGNL1Q0VF96 1302 aa27.7■■■□□ 2.02
VPS28-205ENST00000526204 USP32Q8NFA0 1604 aa27.7■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms