RNA–Protein interactions for RNA: ENST00000509388.5

RNF4-213, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-213ENST00000509388 RIMS2Q9UQ26 1411 aa21.43■■□□□ 1.02
RNF4-213ENST00000509388 KIF1BO60333 1816 aa21.43■■□□□ 1.02
RNF4-213ENST00000509388 KDM5AP29375 1690 aaKnown RBP21.42■■□□□ 1.02
RNF4-213ENST00000509388 NCKAP5LQ9HCH0 1330 aa21.41■■□□□ 1.02
RNF4-213ENST00000509388 VGFO15240 615 aaPredicted RBP21.41■■□□□ 1.02
RNF4-213ENST00000509388 LTKP29376 864 aa21.4■■□□□ 1.02
RNF4-213ENST00000509388 DCAF11Q8TEB1 546 aa21.4■■□□□ 1.02
RNF4-213ENST00000509388 TONSLQ96HA7 1378 aa21.39■■□□□ 1.02
RNF4-213ENST00000509388 KDM2AQ9Y2K7 1162 aa21.39■■□□□ 1.01
RNF4-213ENST00000509388 SLIT1O75093 1534 aa21.39■■□□□ 1.01
RNF4-213ENST00000509388 ARHGAP23Q9P227 1491 aa21.39■■□□□ 1.01
RNF4-213ENST00000509388 NEURL4Q96JN8 1562 aa21.37■■□□□ 1.01
RNF4-213ENST00000509388 DMRT2Q9Y5R5 561 aa21.37■■□□□ 1.01
RNF4-213ENST00000509388 L3MBTL2Q969R5 705 aa21.36■■□□□ 1.01
RNF4-213ENST00000509388 STAC3Q96MF2 364 aa21.36■■□□□ 1.01
RNF4-213ENST00000509388 SENP3Q9H4L4 574 aaPredicted RBP21.36■■□□□ 1.01
RNF4-213ENST00000509388 SCAF11Q99590 1463 aaKnown RBP21.36■■□□□ 1.01
RNF4-213ENST00000509388 ZFYVE9O95405 1425 aa21.35■■□□□ 1.01
RNF4-213ENST00000509388 MYO5BQ9ULV0 1848 aa21.32■■□□□ 1
RNF4-213ENST00000509388 TIMELESSQ9UNS1 1208 aa21.32■■□□□ 1
RNF4-213ENST00000509388 NPHP4O75161 1426 aaPredicted RBP21.31■■□□□ 1
RNF4-213ENST00000509388 NEXMIFQ5QGS0 1516 aa21.31■■□□□ 1
RNF4-213ENST00000509388 PLEKHG1Q9ULL1 1385 aa21.3■■□□□ 1
RNF4-213ENST00000509388 ADGRF5Q8IZF2 1346 aa21.29■■□□□ 1
RNF4-213ENST00000509388 SLC26A8Q96RN1 970 aa21.28■■□□□ 1
RNF4-213ENST00000509388 MED14O60244 1454 aa21.26■□□□□ 0.99
RNF4-213ENST00000509388 MYOM2P54296 1465 aa21.25■□□□□ 0.99
RNF4-213ENST00000509388 TBX22Q9Y458 520 aa21.23■□□□□ 0.99
RNF4-213ENST00000509388 PPLO60437 1756 aa21.23■□□□□ 0.99
RNF4-213ENST00000509388 POLR1AO95602 1720 aaPredicted RBP21.22■□□□□ 0.99
RNF4-213ENST00000509388 STRCQ7RTU9 1775 aa21.21■□□□□ 0.99
RNF4-213ENST00000509388 CFAP70Q5T0N1 1121 aa21.2■□□□□ 0.98
RNF4-213ENST00000509388 C14orf93Q9H972 538 aaKnown RBP21.2■□□□□ 0.98
RNF4-213ENST00000509388 PIK3C2GO75747 1445 aa21.19■□□□□ 0.98
RNF4-213ENST00000509388 IQGAP1P46940 1657 aa21.18■□□□□ 0.98
RNF4-213ENST00000509388 NRXN1Q9ULB1 1477 aa21.18■□□□□ 0.98
RNF4-213ENST00000509388 IFT172Q9UG01 1749 aa21.18■□□□□ 0.98
RNF4-213ENST00000509388 ADAMTS13Q76LX8 1427 aa21.17■□□□□ 0.98
RNF4-213ENST00000509388 SETBP1Q9Y6X0 1596 aa21.17■□□□□ 0.98
RNF4-213ENST00000509388 PRAG1Q86YV5 1406 aa21.16■□□□□ 0.98
RNF4-213ENST00000509388 TMEM132EQ6IEE7 984 aa21.14■□□□□ 0.97
RNF4-213ENST00000509388 NBPF8Q3BBV2 869 aa21.13■□□□□ 0.97
RNF4-213ENST00000509388 ALKQ9UM73 1620 aa21.13■□□□□ 0.97
RNF4-213ENST00000509388 METP08581 1390 aa21.12■□□□□ 0.97
RNF4-213ENST00000509388 PIK3R4Q99570 1358 aa21.12■□□□□ 0.97
RNF4-213ENST00000509388 DIP2AQ14689 1571 aa21.12■□□□□ 0.97
RNF4-213ENST00000509388 KCNA6P17658 529 aa21.12■□□□□ 0.97
RNF4-213ENST00000509388 AMOTL2Q9Y2J4 779 aa21.11■□□□□ 0.97
RNF4-213ENST00000509388 STK26Q9P289 416 aa21.1■□□□□ 0.97
RNF4-213ENST00000509388 ZNF335Q9H4Z2 1342 aaPredicted RBP21.09■□□□□ 0.97
RNF4-213ENST00000509388 NRXN3Q9Y4C0 1643 aa21.09■□□□□ 0.97
RNF4-213ENST00000509388 ZEB1P37275 1124 aaPredicted RBP21.09■□□□□ 0.97
RNF4-213ENST00000509388 NBPF1Q3BBV0 1214 aa21.09■□□□□ 0.97
RNF4-213ENST00000509388 ROCK2O75116 1388 aaKnown RBP21.09■□□□□ 0.97
RNF4-213ENST00000509388 LAMC1P11047 1609 aa21.05■□□□□ 0.96
RNF4-213ENST00000509388 CARD11Q9BXL7 1154 aa21.05■□□□□ 0.96
RNF4-213ENST00000509388 PROSER2Q86WR7 435 aaPredicted RBP21.04■□□□□ 0.96
RNF4-213ENST00000509388 TRAK1Q9UPV9 953 aa21.04■□□□□ 0.96
RNF4-213ENST00000509388 LRPPRCP42704 1394 aaKnown RBP21.04■□□□□ 0.96
RNF4-213ENST00000509388 YTHDC2Q9H6S0 1430 aaKnown RBP21.04■□□□□ 0.96
RNF4-213ENST00000509388 PTPRUQ92729 1446 aa21.03■□□□□ 0.96
RNF4-213ENST00000509388 ABCC11Q96J66 1382 aa21.01■□□□□ 0.95
RNF4-213ENST00000509388 POGKQ9P215 609 aa21.01■□□□□ 0.95
RNF4-213ENST00000509388 RALGAPBQ86X10 1494 aa21.01■□□□□ 0.95
RNF4-213ENST00000509388 C14orf37Q86TY3 774 aa21■□□□□ 0.95
RNF4-213ENST00000509388 KIAA1210Q9ULL0 1709 aa21■□□□□ 0.95
RNF4-213ENST00000509388 ADGRB1O14514 1584 aa20.98■□□□□ 0.95
RNF4-213ENST00000509388 SIRT1Q96EB6 747 aa20.98■□□□□ 0.95
RNF4-213ENST00000509388 ASXL1Q8IXJ9 1541 aa20.98■□□□□ 0.95
RNF4-213ENST00000509388 SETD1AO15047 1707 aaKnown RBP20.98■□□□□ 0.95
RNF4-213ENST00000509388 TRPM1Q7Z4N2 1603 aa20.97■□□□□ 0.95
RNF4-213ENST00000509388 CPS1P31327 1500 aa20.97■□□□□ 0.95
RNF4-213ENST00000509388 GPRASP1Q5JY77 1395 aa20.97■□□□□ 0.95
RNF4-213ENST00000509388 NKTRP30414 1462 aaKnown RBP20.96■□□□□ 0.95
RNF4-213ENST00000509388 RBM33Q96EV2 1170 aaKnown RBP20.96■□□□□ 0.95
RNF4-213ENST00000509388 PRAM1Q96QH2 718 aa20.96■□□□□ 0.95
RNF4-213ENST00000509388 WAPLQ7Z5K2 1190 aa20.95■□□□□ 0.94
RNF4-213ENST00000509388 EIF3AQ14152 1382 aaKnown RBP20.95■□□□□ 0.94
RNF4-213ENST00000509388 ROBO2Q9HCK4 1378 aa20.95■□□□□ 0.94
RNF4-213ENST00000509388 CHD2O14647 1828 aaKnown RBP20.94■□□□□ 0.94
RNF4-213ENST00000509388 NWD1Q149M9 1564 aa20.94■□□□□ 0.94
RNF4-213ENST00000509388 SAFB2Q14151 953 aaKnown RBP eCLIP20.94■□□□□ 0.94
RNF4-213ENST00000509388 TECPR2O15040 1411 aa20.94■□□□□ 0.94
RNF4-213ENST00000509388 PTCH1Q13635 1447 aa20.94■□□□□ 0.94
RNF4-213ENST00000509388 TMEM94Q12767 1356 aa20.93■□□□□ 0.94
RNF4-213ENST00000509388 FAM135BQ49AJ0 1406 aa20.92■□□□□ 0.94
RNF4-213ENST00000509388 XRN1Q8IZH2 1706 aaKnown RBP20.9■□□□□ 0.94
RNF4-213ENST00000509388 LTBP4Q8N2S1 1624 aa20.9■□□□□ 0.94
RNF4-213ENST00000509388 LRRC7Q96NW7 1537 aa20.9■□□□□ 0.94
RNF4-213ENST00000509388 DLC1Q96QB1 1528 aa20.9■□□□□ 0.94
RNF4-213ENST00000509388 CENPJQ9HC77 1338 aaPredicted RBP20.9■□□□□ 0.94
RNF4-213ENST00000509388 CERKQ8TCT0 537 aa20.89■□□□□ 0.93
RNF4-213ENST00000509388 NCOA3Q9Y6Q9 1424 aa20.88■□□□□ 0.93
RNF4-213ENST00000509388 PLEKHH1Q9ULM0 1364 aa20.88■□□□□ 0.93
RNF4-213ENST00000509388 EIF4G2P78344 907 aaKnown RBP eCLIP20.88■□□□□ 0.93
RNF4-213ENST00000509388 C19orf44Q9H6X5 657 aa20.88■□□□□ 0.93
RNF4-213ENST00000509388 STRCP1A6NGW2 1772 aa20.87■□□□□ 0.93
RNF4-213ENST00000509388 MSH6P52701 1360 aa20.87■□□□□ 0.93
RNF4-213ENST00000509388 USP47Q96K76 1375 aa20.87■□□□□ 0.93
RNF4-213ENST00000509388 MINK1Q8N4C8 1332 aaPredicted RBP20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms