RNA–Protein interactions for RNA: ENST00000505010.5

TPM3-218, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 540 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-218ENST00000505010 ABCC3O15438 1527 aa13.56□□□□□ -0.24
TPM3-218ENST00000505010 LMTK2Q8IWU2 1503 aa13.56□□□□□ -0.24
TPM3-218ENST00000505010 STRCP1A6NGW2 1772 aa13.54□□□□□ -0.24
TPM3-218ENST00000505010 TONSLQ96HA7 1378 aa13.54□□□□□ -0.24
TPM3-218ENST00000505010 RPRD2Q5VT52 1461 aaKnown RBP13.54□□□□□ -0.24
TPM3-218ENST00000505010 SYNMO15061 1565 aa13.54□□□□□ -0.24
TPM3-218ENST00000505010 FAM135BQ49AJ0 1406 aa13.52□□□□□ -0.25
TPM3-218ENST00000505010 CFAP65Q6ZU64 1925 aaKnown RBP13.51□□□□□ -0.25
TPM3-218ENST00000505010 TRPM2O94759 1503 aa13.51□□□□□ -0.25
TPM3-218ENST00000505010 TXNDC2Q86VQ3 553 aa13.5□□□□□ -0.25
TPM3-218ENST00000505010 CLTCL1P53675 1640 aa13.49□□□□□ -0.25
TPM3-218ENST00000505010 CCDC144AA2RUR9 1427 aa13.48□□□□□ -0.25
TPM3-218ENST00000505010 LTKP29376 864 aa13.48□□□□□ -0.25
TPM3-218ENST00000505010 EID1Q9Y6B2 187 aa13.48□□□□□ -0.25
TPM3-218ENST00000505010 SCAF11Q99590 1463 aaKnown RBP13.48□□□□□ -0.25
TPM3-218ENST00000505010 TIMELESSQ9UNS1 1208 aa13.47□□□□□ -0.25
TPM3-218ENST00000505010 KIF1BO60333 1816 aa13.47□□□□□ -0.25
TPM3-218ENST00000505010 ERVK-7P63135 1459 aa13.44□□□□□ -0.26
TPM3-218ENST00000505010 TMEM94Q12767 1356 aa13.44□□□□□ -0.26
TPM3-218ENST00000505010 ARHGAP31Q2M1Z3 1444 aa13.42□□□□□ -0.26
TPM3-218ENST00000505010 XIRP1Q702N8 1843 aaKnown RBP13.42□□□□□ -0.26
TPM3-218ENST00000505010 KCNA6P17658 529 aa13.42□□□□□ -0.26
TPM3-218ENST00000505010 PROSER2Q86WR7 435 aaPredicted RBP13.42□□□□□ -0.26
TPM3-218ENST00000505010 UPF1Q92900 1129 aaKnown RBP eCLIP13.42□□□□□ -0.26
TPM3-218ENST00000505010 RBM33Q96EV2 1170 aaKnown RBP13.41□□□□□ -0.26
TPM3-218ENST00000505010 STAG3Q9UJ98 1225 aa13.41□□□□□ -0.26
TPM3-218ENST00000505010 PIK3C2BO00750 1634 aa13.41□□□□□ -0.26
TPM3-218ENST00000505010 UBR1Q8IWV7 1749 aa13.41□□□□□ -0.26
TPM3-218ENST00000505010 ARHGAP23Q9P227 1491 aa13.41□□□□□ -0.26
TPM3-218ENST00000505010 SRCAPQ6ZRS2 3230 aa13.4□□□□□ -0.26
TPM3-218ENST00000505010 SLIT1O75093 1534 aa13.4□□□□□ -0.26
TPM3-218ENST00000505010 SETD1AO15047 1707 aaKnown RBP13.4□□□□□ -0.26
TPM3-218ENST00000505010 L3MBTL2Q969R5 705 aa13.4□□□□□ -0.26
TPM3-218ENST00000505010 PPP1R15AO75807 674 aaPredicted RBP13.39□□□□□ -0.27
TPM3-218ENST00000505010 SLAIN2Q9P270 581 aa13.39□□□□□ -0.27
TPM3-218ENST00000505010 JCADQ9P266 1359 aa13.39□□□□□ -0.27
TPM3-218ENST00000505010 ROBO1Q9Y6N7 1651 aa13.39□□□□□ -0.27
TPM3-218ENST00000505010 IFT172Q9UG01 1749 aa13.39□□□□□ -0.27
TPM3-218ENST00000505010 NOS1P29475 1434 aa13.39□□□□□ -0.27
TPM3-218ENST00000505010 ZNF772Q68DY9 489 aaPredicted RBP13.38□□□□□ -0.27
TPM3-218ENST00000505010 SLC26A8Q96RN1 970 aa13.38□□□□□ -0.27
TPM3-218ENST00000505010 ADGRB3O60242 1522 aa13.38□□□□□ -0.27
TPM3-218ENST00000505010 MYO5BQ9ULV0 1848 aa13.37□□□□□ -0.27
TPM3-218ENST00000505010 TMEM2Q9UHN6 1383 aa13.37□□□□□ -0.27
TPM3-218ENST00000505010 MEX3CQ5U5Q3 659 aaKnown RBP13.37□□□□□ -0.27
TPM3-218ENST00000505010 SPATA31E1Q6ZUB1 1445 aa13.37□□□□□ -0.27
TPM3-218ENST00000505010 MSH6P52701 1360 aa13.36□□□□□ -0.27
TPM3-218ENST00000505010 BCANQ96GW7 911 aa13.34□□□□□ -0.27
TPM3-218ENST00000505010 PPLO60437 1756 aa13.34□□□□□ -0.27
TPM3-218ENST00000505010 SPATA31A6Q5VVP1 1343 aa13.34□□□□□ -0.27
TPM3-218ENST00000505010 RXRBP28702 533 aa13.33□□□□□ -0.28
TPM3-218ENST00000505010 RGL3Q3MIN7 710 aa13.33□□□□□ -0.28
TPM3-218ENST00000505010 ZNF326Q5BKZ1 582 aaKnown RBP13.33□□□□□ -0.28
TPM3-218ENST00000505010 PHLPP1O60346 1717 aa13.33□□□□□ -0.28
TPM3-218ENST00000505010 TRPM1Q7Z4N2 1603 aa13.32□□□□□ -0.28
TPM3-218ENST00000505010 TMEM131LA2VDJ0 1609 aa13.31□□□□□ -0.28
TPM3-218ENST00000505010 IDI1Q13907 227 aa13.31□□□□□ -0.28
TPM3-218ENST00000505010 DCAF11Q8TEB1 546 aa13.31□□□□□ -0.28
TPM3-218ENST00000505010 RALGAPBQ86X10 1494 aa13.3□□□□□ -0.28
TPM3-218ENST00000505010 CHGAP10645 457 aaKnown RBP13.3□□□□□ -0.28
TPM3-218ENST00000505010 KDM2AQ9Y2K7 1162 aa13.3□□□□□ -0.28
TPM3-218ENST00000505010 PRAG1Q86YV5 1406 aa13.3□□□□□ -0.28
TPM3-218ENST00000505010 NKTRP30414 1462 aaKnown RBP13.29□□□□□ -0.28
TPM3-218ENST00000505010 NBPF8Q3BBV2 869 aa13.29□□□□□ -0.28
TPM3-218ENST00000505010 MYOM2P54296 1465 aa13.29□□□□□ -0.28
TPM3-218ENST00000505010 LRP6O75581 1613 aa13.28□□□□□ -0.28
TPM3-218ENST00000505010 C14orf37Q86TY3 774 aa13.27□□□□□ -0.29
TPM3-218ENST00000505010 SLC52A1Q9NWF4 448 aa13.27□□□□□ -0.29
TPM3-218ENST00000505010 NEXMIFQ5QGS0 1516 aa13.27□□□□□ -0.29
TPM3-218ENST00000505010 KIAA1210Q9ULL0 1709 aa13.27□□□□□ -0.29
TPM3-218ENST00000505010 ZNF316A6NFI3 1004 aaPredicted RBP13.26□□□□□ -0.29
TPM3-218ENST00000505010 LAMC1P11047 1609 aa13.26□□□□□ -0.29
TPM3-218ENST00000505010 KDM5AP29375 1690 aaKnown RBP13.26□□□□□ -0.29
TPM3-218ENST00000505010 COL16A1Q07092 1604 aaPredicted RBP13.25□□□□□ -0.29
TPM3-218ENST00000505010 NWD1Q149M9 1564 aa13.24□□□□□ -0.29
TPM3-218ENST00000505010 NUTM2BA6NNL0 878 aaPredicted RBP13.24□□□□□ -0.29
TPM3-218ENST00000505010 NUTM2EB1AL46 878 aaPredicted RBP13.24□□□□□ -0.29
TPM3-218ENST00000505010 ATF3P18847 181 aa13.24□□□□□ -0.29
TPM3-218ENST00000505010 HDGFP51858 240 aaKnown RBP13.24□□□□□ -0.29
TPM3-218ENST00000505010 CADPS2Q86UW7 1296 aa13.24□□□□□ -0.29
TPM3-218ENST00000505010 NUTM2AQ8IVF1 878 aaPredicted RBP13.24□□□□□ -0.29
TPM3-218ENST00000505010 CDK12Q9NYV4 1490 aaPredicted RBP13.23□□□□□ -0.29
TPM3-218ENST00000505010 NCOA3Q9Y6Q9 1424 aa13.22□□□□□ -0.29
TPM3-218ENST00000505010 C19orf44Q9H6X5 657 aa13.22□□□□□ -0.29
TPM3-218ENST00000505010 NRXN1Q9ULB1 1477 aa13.22□□□□□ -0.29
TPM3-218ENST00000505010 ROCK2O75116 1388 aaKnown RBP13.21□□□□□ -0.29
TPM3-218ENST00000505010 AFF2P51816 1311 aa13.21□□□□□ -0.29
TPM3-218ENST00000505010 RPGRIP1LQ68CZ1 1315 aa13.21□□□□□ -0.29
TPM3-218ENST00000505010 TBX22Q9Y458 520 aa13.21□□□□□ -0.29
TPM3-218ENST00000505010 STAC3Q96MF2 364 aa13.2□□□□□ -0.3
TPM3-218ENST00000505010 PLEKHG1Q9ULL1 1385 aa13.2□□□□□ -0.3
TPM3-218ENST00000505010 RBM6P78332 1123 aaKnown RBP13.19□□□□□ -0.3
TPM3-218ENST00000505010 NUTM2DQ5VT03 806 aaPredicted RBP13.19□□□□□ -0.3
TPM3-218ENST00000505010 QTRT2Q9H974 415 aaKnown RBP13.19□□□□□ -0.3
TPM3-218ENST00000505010 PIK3C2GO75747 1445 aa13.19□□□□□ -0.3
TPM3-218ENST00000505010 USP47Q96K76 1375 aa13.19□□□□□ -0.3
TPM3-218ENST00000505010 SHPRHQ149N8 1683 aa13.18□□□□□ -0.3
TPM3-218ENST00000505010 ADGRF5Q8IZF2 1346 aa13.18□□□□□ -0.3
TPM3-218ENST00000505010 EIF4G2P78344 907 aaKnown RBP eCLIP13.18□□□□□ -0.3
TPM3-218ENST00000505010 HIRIP3Q9BW71 556 aaPredicted RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms