RNA–Protein interactions for RNA: ENST00000498056.1

CPNE1-227, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 362 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-227ENST00000498056 ZFYVE9O95405 1425 aa19.65■□□□□ 0.74
CPNE1-227ENST00000498056 STRCQ7RTU9 1775 aa19.65■□□□□ 0.74
CPNE1-227ENST00000498056 AEBP2Q6ZN18 517 aaPredicted RBP19.64■□□□□ 0.73
CPNE1-227ENST00000498056 MYOM2P54296 1465 aa19.64■□□□□ 0.73
CPNE1-227ENST00000498056 LAMC1P11047 1609 aa19.64■□□□□ 0.73
CPNE1-227ENST00000498056 SCAF11Q99590 1463 aaKnown RBP19.63■□□□□ 0.73
CPNE1-227ENST00000498056 TMEM2Q9UHN6 1383 aa19.63■□□□□ 0.73
CPNE1-227ENST00000498056 NRXN3Q9Y4C0 1643 aa19.62■□□□□ 0.73
CPNE1-227ENST00000498056 THEMISQ8N1K5 641 aaPredicted RBP19.61■□□□□ 0.73
CPNE1-227ENST00000498056 SETD1AO15047 1707 aaKnown RBP19.61■□□□□ 0.73
CPNE1-227ENST00000498056 HSPA2P54652 639 aa19.59■□□□□ 0.73
CPNE1-227ENST00000498056 TRPM1Q7Z4N2 1603 aa19.58■□□□□ 0.73
CPNE1-227ENST00000498056 PPP1R15AO75807 674 aaPredicted RBP19.58■□□□□ 0.72
CPNE1-227ENST00000498056 NUTM2DQ5VT03 806 aaPredicted RBP19.58■□□□□ 0.72
CPNE1-227ENST00000498056 KIAA1210Q9ULL0 1709 aa19.58■□□□□ 0.72
CPNE1-227ENST00000498056 SETBP1Q9Y6X0 1596 aa19.57■□□□□ 0.72
CPNE1-227ENST00000498056 RPGRIP1LQ68CZ1 1315 aa19.56■□□□□ 0.72
CPNE1-227ENST00000498056 DIP2AQ14689 1571 aa19.55■□□□□ 0.72
CPNE1-227ENST00000498056 DCAF11Q8TEB1 546 aa19.55■□□□□ 0.72
CPNE1-227ENST00000498056 L3MBTL2Q969R5 705 aa19.55■□□□□ 0.72
CPNE1-227ENST00000498056 NRXN1Q9ULB1 1477 aa19.54■□□□□ 0.72
CPNE1-227ENST00000498056 SENP3Q9H4L4 574 aaPredicted RBP19.54■□□□□ 0.72
CPNE1-227ENST00000498056 KDM2AQ9Y2K7 1162 aa19.54■□□□□ 0.72
CPNE1-227ENST00000498056 EID1Q9Y6B2 187 aa19.54■□□□□ 0.72
CPNE1-227ENST00000498056 PIK3C2GO75747 1445 aa19.53■□□□□ 0.72
CPNE1-227ENST00000498056 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.53■□□□□ 0.72
CPNE1-227ENST00000498056 PRAG1Q86YV5 1406 aa19.52■□□□□ 0.72
CPNE1-227ENST00000498056 PLEKHG1Q9ULL1 1385 aa19.52■□□□□ 0.72
CPNE1-227ENST00000498056 NPHP4O75161 1426 aaPredicted RBP19.51■□□□□ 0.71
CPNE1-227ENST00000498056 ALKQ9UM73 1620 aa19.51■□□□□ 0.71
CPNE1-227ENST00000498056 TXNDC2Q86VQ3 553 aa19.51■□□□□ 0.71
CPNE1-227ENST00000498056 MED14O60244 1454 aa19.5■□□□□ 0.71
CPNE1-227ENST00000498056 HDGFP51858 240 aaKnown RBP19.5■□□□□ 0.71
CPNE1-227ENST00000498056 ANKLE2Q86XL3 938 aa19.5■□□□□ 0.71
CPNE1-227ENST00000498056 ADGRF5Q8IZF2 1346 aa19.5■□□□□ 0.71
CPNE1-227ENST00000498056 VGFO15240 615 aaPredicted RBP19.49■□□□□ 0.71
CPNE1-227ENST00000498056 LTKP29376 864 aa19.49■□□□□ 0.71
CPNE1-227ENST00000498056 NCKAP5LQ9HCH0 1330 aa19.49■□□□□ 0.71
CPNE1-227ENST00000498056 ASXL1Q8IXJ9 1541 aa19.48■□□□□ 0.71
CPNE1-227ENST00000498056 BCANQ96GW7 911 aa19.48■□□□□ 0.71
CPNE1-227ENST00000498056 TIMELESSQ9UNS1 1208 aa19.47■□□□□ 0.71
CPNE1-227ENST00000498056 KNDC1Q76NI1 1749 aa19.47■□□□□ 0.71
CPNE1-227ENST00000498056 RALGAPBQ86X10 1494 aa19.46■□□□□ 0.71
CPNE1-227ENST00000498056 CHD2O14647 1828 aaKnown RBP19.45■□□□□ 0.7
CPNE1-227ENST00000498056 ADAMTS13Q76LX8 1427 aa19.44■□□□□ 0.7
CPNE1-227ENST00000498056 ARHGEF28Q8N1W1 1705 aaKnown RBP19.44■□□□□ 0.7
CPNE1-227ENST00000498056 XRN1Q8IZH2 1706 aaKnown RBP19.43■□□□□ 0.7
CPNE1-227ENST00000498056 STAC3Q96MF2 364 aa19.43■□□□□ 0.7
CPNE1-227ENST00000498056 ADGRB1O14514 1584 aa19.42■□□□□ 0.7
CPNE1-227ENST00000498056 STRCP1A6NGW2 1772 aa19.42■□□□□ 0.7
CPNE1-227ENST00000498056 NWD1Q149M9 1564 aa19.4■□□□□ 0.7
CPNE1-227ENST00000498056 NBPF8Q3BBV2 869 aa19.39■□□□□ 0.69
CPNE1-227ENST00000498056 SLC26A8Q96RN1 970 aa19.39■□□□□ 0.69
CPNE1-227ENST00000498056 ROCK2O75116 1388 aaKnown RBP19.38■□□□□ 0.69
CPNE1-227ENST00000498056 ZEB1P37275 1124 aaPredicted RBP19.37■□□□□ 0.69
CPNE1-227ENST00000498056 CFAP70Q5T0N1 1121 aa19.37■□□□□ 0.69
CPNE1-227ENST00000498056 QRICH2Q9H0J4 1663 aa19.36■□□□□ 0.69
CPNE1-227ENST00000498056 CPS1P31327 1500 aa19.36■□□□□ 0.69
CPNE1-227ENST00000498056 METP08581 1390 aa19.35■□□□□ 0.69
CPNE1-227ENST00000498056 C14orf93Q9H972 538 aaKnown RBP19.33■□□□□ 0.68
CPNE1-227ENST00000498056 YTHDC2Q9H6S0 1430 aaKnown RBP19.32■□□□□ 0.68
CPNE1-227ENST00000498056 PTPRUQ92729 1446 aa19.31■□□□□ 0.68
CPNE1-227ENST00000498056 NALCNQ8IZF0 1738 aa19.31■□□□□ 0.68
CPNE1-227ENST00000498056 GPRASP1Q5JY77 1395 aa19.31■□□□□ 0.68
CPNE1-227ENST00000498056 PIK3R4Q99570 1358 aa19.31■□□□□ 0.68
CPNE1-227ENST00000498056 XIRP1Q702N8 1843 aaKnown RBP19.3■□□□□ 0.68
CPNE1-227ENST00000498056 NBPF1Q3BBV0 1214 aa19.3■□□□□ 0.68
CPNE1-227ENST00000498056 TMEM132EQ6IEE7 984 aa19.3■□□□□ 0.68
CPNE1-227ENST00000498056 TBX22Q9Y458 520 aa19.3■□□□□ 0.68
CPNE1-227ENST00000498056 DMRT2Q9Y5R5 561 aa19.3■□□□□ 0.68
CPNE1-227ENST00000498056 DLC1Q96QB1 1528 aa19.3■□□□□ 0.68
CPNE1-227ENST00000498056 NKTRP30414 1462 aaKnown RBP19.29■□□□□ 0.68
CPNE1-227ENST00000498056 LRPPRCP42704 1394 aaKnown RBP19.28■□□□□ 0.68
CPNE1-227ENST00000498056 PTCH1Q13635 1447 aa19.27■□□□□ 0.68
CPNE1-227ENST00000498056 CARD11Q9BXL7 1154 aa19.27■□□□□ 0.68
CPNE1-227ENST00000498056 TECPR2O15040 1411 aa19.26■□□□□ 0.67
CPNE1-227ENST00000498056 STK26Q9P289 416 aa19.26■□□□□ 0.67
CPNE1-227ENST00000498056 EIF3AQ14152 1382 aaKnown RBP19.25■□□□□ 0.67
CPNE1-227ENST00000498056 ZNF335Q9H4Z2 1342 aaPredicted RBP19.24■□□□□ 0.67
CPNE1-227ENST00000498056 USP47Q96K76 1375 aa19.23■□□□□ 0.67
CPNE1-227ENST00000498056 TRAK1Q9UPV9 953 aa19.23■□□□□ 0.67
CPNE1-227ENST00000498056 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.22■□□□□ 0.67
CPNE1-227ENST00000498056 KCNA6P17658 529 aa19.21■□□□□ 0.67
CPNE1-227ENST00000498056 AMOTL2Q9Y2J4 779 aa19.21■□□□□ 0.67
CPNE1-227ENST00000498056 LTBP4Q8N2S1 1624 aa19.21■□□□□ 0.67
CPNE1-227ENST00000498056 ABCC11Q96J66 1382 aa19.2■□□□□ 0.66
CPNE1-227ENST00000498056 ROBO2Q9HCK4 1378 aa19.2■□□□□ 0.66
CPNE1-227ENST00000498056 ADGRB2O60241 1585 aa19.19■□□□□ 0.66
CPNE1-227ENST00000498056 FAM135BQ49AJ0 1406 aa19.18■□□□□ 0.66
CPNE1-227ENST00000498056 PLEKHH1Q9ULM0 1364 aa19.18■□□□□ 0.66
CPNE1-227ENST00000498056 LRRC7Q96NW7 1537 aa19.16■□□□□ 0.66
CPNE1-227ENST00000498056 CDC42BPGQ6DT37 1551 aa19.16■□□□□ 0.66
CPNE1-227ENST00000498056 FMN2Q9NZ56 1722 aa19.16■□□□□ 0.66
CPNE1-227ENST00000498056 SAFB2Q14151 953 aaKnown RBP eCLIP19.15■□□□□ 0.66
CPNE1-227ENST00000498056 PRAM1Q96QH2 718 aa19.15■□□□□ 0.66
CPNE1-227ENST00000498056 CENPJQ9HC77 1338 aaPredicted RBP19.15■□□□□ 0.66
CPNE1-227ENST00000498056 ITSN1Q15811 1721 aa19.14■□□□□ 0.66
CPNE1-227ENST00000498056 POGKQ9P215 609 aa19.14■□□□□ 0.65
CPNE1-227ENST00000498056 RGPD8O14715 1765 aaPredicted RBP19.14■□□□□ 0.65
CPNE1-227ENST00000498056 ADGRL3Q9HAR2 1447 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms