RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 KANK4Q5T7N3 995 aaPredicted RBP13□□□□□ -0.33
USP39-216ENST00000490193 TET3O43151 1660 aa12.99□□□□□ -0.33
USP39-216ENST00000490193 EID1Q9Y6B2 187 aa12.99□□□□□ -0.33
USP39-216ENST00000490193 NWD1Q149M9 1564 aa12.98□□□□□ -0.33
USP39-216ENST00000490193 SAMD1Q6SPF0 538 aaPredicted RBP12.98□□□□□ -0.33
USP39-216ENST00000490193 SETD1AO15047 1707 aaKnown RBP12.98□□□□□ -0.33
USP39-216ENST00000490193 ROBO1Q9Y6N7 1651 aa12.97□□□□□ -0.33
USP39-216ENST00000490193 NKTRP30414 1462 aaKnown RBP12.97□□□□□ -0.33
USP39-216ENST00000490193 DAPK1P53355 1430 aa12.96□□□□□ -0.33
USP39-216ENST00000490193 KANK1Q14678 1352 aa12.96□□□□□ -0.33
USP39-216ENST00000490193 KCNA4P22459 653 aa12.96□□□□□ -0.33
USP39-216ENST00000490193 ADGRB3O60242 1522 aa12.96□□□□□ -0.33
USP39-216ENST00000490193 NOS1P29475 1434 aa12.96□□□□□ -0.34
USP39-216ENST00000490193 TMEM94Q12767 1356 aa12.95□□□□□ -0.34
USP39-216ENST00000490193 KCNA6P17658 529 aa12.95□□□□□ -0.34
USP39-216ENST00000490193 RBM42Q9BTD8 480 aaKnown RBP12.95□□□□□ -0.34
USP39-216ENST00000490193 RRP7BPQ9NSQ0 103 aa12.94□□□□□ -0.34
USP39-216ENST00000490193 IDI1Q13907 227 aa12.93□□□□□ -0.34
USP39-216ENST00000490193 FGD6Q6ZV73 1430 aa12.93□□□□□ -0.34
USP39-216ENST00000490193 ANKRD30AQ9BXX3 1397 aa12.92□□□□□ -0.34
USP39-216ENST00000490193 ADGRL2O95490 1459 aa12.91□□□□□ -0.34
USP39-216ENST00000490193 RPRD2Q5VT52 1461 aaKnown RBP12.91□□□□□ -0.34
USP39-216ENST00000490193 CHD2O14647 1828 aaKnown RBP12.91□□□□□ -0.34
USP39-216ENST00000490193 STAG3Q9UJ98 1225 aa12.91□□□□□ -0.34
USP39-216ENST00000490193 POTEAQ6S8J7 498 aa12.9□□□□□ -0.34
USP39-216ENST00000490193 MYO5BQ9ULV0 1848 aa12.9□□□□□ -0.34
USP39-216ENST00000490193 ZFYVE9O95405 1425 aa12.89□□□□□ -0.35
USP39-216ENST00000490193 PHLPP1O60346 1717 aa12.89□□□□□ -0.35
USP39-216ENST00000490193 PROSER2Q86WR7 435 aaPredicted RBP12.89□□□□□ -0.35
USP39-216ENST00000490193 SLC26A8Q96RN1 970 aa12.89□□□□□ -0.35
USP39-216ENST00000490193 SLC52A1Q9NWF4 448 aa12.89□□□□□ -0.35
USP39-216ENST00000490193 LOC105371045A0A1W2PR82 267 aa12.88□□□□□ -0.35
USP39-216ENST00000490193 MSH6P52701 1360 aa12.88□□□□□ -0.35
USP39-216ENST00000490193 GCC2Q8IWJ2 1684 aa12.88□□□□□ -0.35
USP39-216ENST00000490193 PLEKHG1Q9ULL1 1385 aa12.87□□□□□ -0.35
USP39-216ENST00000490193 TMEM131LA2VDJ0 1609 aa12.87□□□□□ -0.35
USP39-216ENST00000490193 COL16A1Q07092 1604 aaPredicted RBP12.87□□□□□ -0.35
USP39-216ENST00000490193 NCOA3Q9Y6Q9 1424 aa12.86□□□□□ -0.35
USP39-216ENST00000490193 JCADQ9P266 1359 aa12.85□□□□□ -0.35
USP39-216ENST00000490193 RBM33Q96EV2 1170 aaKnown RBP12.84□□□□□ -0.35
USP39-216ENST00000490193 SLAIN2Q9P270 581 aa12.84□□□□□ -0.35
USP39-216ENST00000490193 CHIC2Q9UKJ5 165 aa12.84□□□□□ -0.35
USP39-216ENST00000490193 DIP2AQ14689 1571 aa12.84□□□□□ -0.35
USP39-216ENST00000490193 UNC13BO14795 1591 aa12.83□□□□□ -0.36
USP39-216ENST00000490193 ANKRD50Q9ULJ7 1429 aa12.83□□□□□ -0.36
USP39-216ENST00000490193 RIMS2Q9UQ26 1411 aa12.83□□□□□ -0.36
USP39-216ENST00000490193 AHDC1Q5TGY3 1603 aaPredicted RBP12.82□□□□□ -0.36
USP39-216ENST00000490193 SHPRHQ149N8 1683 aa12.82□□□□□ -0.36
USP39-216ENST00000490193 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.82□□□□□ -0.36
USP39-216ENST00000490193 TBX22Q9Y458 520 aa12.81□□□□□ -0.36
USP39-216ENST00000490193 PIK3R4Q99570 1358 aa12.81□□□□□ -0.36
USP39-216ENST00000490193 E9PCH4 1651 aa12.8□□□□□ -0.36
USP39-216ENST00000490193 HDGFP51858 240 aaKnown RBP12.8□□□□□ -0.36
USP39-216ENST00000490193 LRP6O75581 1613 aa12.8□□□□□ -0.36
USP39-216ENST00000490193 ADAMTS13Q76LX8 1427 aa12.79□□□□□ -0.36
USP39-216ENST00000490193 CHRDL2Q6WN34 429 aa12.79□□□□□ -0.36
USP39-216ENST00000490193 BCANQ96GW7 911 aa12.79□□□□□ -0.36
USP39-216ENST00000490193 SPATA31A6Q5VVP1 1343 aa12.79□□□□□ -0.36
USP39-216ENST00000490193 IQGAP3Q86VI3 1631 aa12.78□□□□□ -0.36
USP39-216ENST00000490193 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.78□□□□□ -0.36
USP39-216ENST00000490193 PPP1R15AO75807 674 aaPredicted RBP12.77□□□□□ -0.37
USP39-216ENST00000490193 TRPM2O94759 1503 aa12.77□□□□□ -0.37
USP39-216ENST00000490193 CADPS2Q86UW7 1296 aa12.76□□□□□ -0.37
USP39-216ENST00000490193 DCCP43146 1447 aa12.75□□□□□ -0.37
USP39-216ENST00000490193 C19orf44Q9H6X5 657 aa12.75□□□□□ -0.37
USP39-216ENST00000490193 XRN1Q8IZH2 1706 aaKnown RBP12.74□□□□□ -0.37
USP39-216ENST00000490193 UPF1Q92900 1129 aaKnown RBP eCLIP12.74□□□□□ -0.37
USP39-216ENST00000490193 NRXN3Q9Y4C0 1643 aa12.73□□□□□ -0.37
USP39-216ENST00000490193 ROCK1Q13464 1354 aa12.73□□□□□ -0.37
USP39-216ENST00000490193 ZNF772Q68DY9 489 aaPredicted RBP12.73□□□□□ -0.37
USP39-216ENST00000490193 NHSL1Q5SYE7 1610 aa12.73□□□□□ -0.37
USP39-216ENST00000490193 CDK12Q9NYV4 1490 aaPredicted RBP12.72□□□□□ -0.37
USP39-216ENST00000490193 PTPRUQ92729 1446 aa12.72□□□□□ -0.37
USP39-216ENST00000490193 ATF3P18847 181 aa12.72□□□□□ -0.37
USP39-216ENST00000490193 FAM50AQ14320 339 aaKnown RBP12.72□□□□□ -0.37
USP39-216ENST00000490193 SETBP1Q9Y6X0 1596 aa12.72□□□□□ -0.37
USP39-216ENST00000490193 C14orf37Q86TY3 774 aa12.71□□□□□ -0.37
USP39-216ENST00000490193 POLA2Q14181 598 aa12.7□□□□□ -0.38
USP39-216ENST00000490193 BRINP3Q76B58 766 aa12.7□□□□□ -0.38
USP39-216ENST00000490193 ASXL1Q8IXJ9 1541 aa12.7□□□□□ -0.38
USP39-216ENST00000490193 SPHKAPQ2M3C7 1700 aa12.7□□□□□ -0.38
USP39-216ENST00000490193 SETD5Q9C0A6 1442 aa12.7□□□□□ -0.38
USP39-216ENST00000490193 CHGAP10645 457 aaKnown RBP12.69□□□□□ -0.38
USP39-216ENST00000490193 MEX3CQ5U5Q3 659 aaKnown RBP12.69□□□□□ -0.38
USP39-216ENST00000490193 AMOTL2Q9Y2J4 779 aa12.69□□□□□ -0.38
USP39-216ENST00000490193 MST1RQ04912 1400 aa12.68□□□□□ -0.38
USP39-216ENST00000490193 NUTM2DQ5VT03 806 aaPredicted RBP12.67□□□□□ -0.38
USP39-216ENST00000490193 MYCNP04198 464 aaPredicted RBP12.66□□□□□ -0.38
USP39-216ENST00000490193 RXRBP28702 533 aa12.66□□□□□ -0.38
USP39-216ENST00000490193 LAMC1P11047 1609 aa12.66□□□□□ -0.38
USP39-216ENST00000490193 NALCNQ8IZF0 1738 aa12.65□□□□□ -0.38
USP39-216ENST00000490193 TRIM52Q96A61 297 aa12.65□□□□□ -0.38
USP39-216ENST00000490193 NUP155O75694 1391 aa12.65□□□□□ -0.38
USP39-216ENST00000490193 ADGRL3Q9HAR2 1447 aa12.64□□□□□ -0.39
USP39-216ENST00000490193 AFF2P51816 1311 aa12.63□□□□□ -0.39
USP39-216ENST00000490193 NEXMIFQ5QGS0 1516 aa12.63□□□□□ -0.39
USP39-216ENST00000490193 SRCAPQ6ZRS2 3230 aa12.63□□□□□ -0.39
USP39-216ENST00000490193 METP08581 1390 aa12.62□□□□□ -0.39
USP39-216ENST00000490193 PNPLA6Q8IY17 1366 aa12.62□□□□□ -0.39
USP39-216ENST00000490193 LRRC59Q96AG4 307 aaKnown RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms