RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 NWD1Q149M9 1564 aa18.76■□□□□ 0.59
HDAC6-233ENST00000489352 ATF3P18847 181 aa18.75■□□□□ 0.59
HDAC6-233ENST00000489352 TET3O43151 1660 aa18.74■□□□□ 0.59
HDAC6-233ENST00000489352 CADPS2Q86UW7 1296 aa18.74■□□□□ 0.59
HDAC6-233ENST00000489352 EIF2AK4Q9P2K8 1649 aaKnown RBP18.72■□□□□ 0.59
HDAC6-233ENST00000489352 CCDC125Q86Z20 511 aa18.72■□□□□ 0.59
HDAC6-233ENST00000489352 EFCAB6Q5THR3 1501 aa18.72■□□□□ 0.59
HDAC6-233ENST00000489352 CHD2O14647 1828 aaKnown RBP18.72■□□□□ 0.59
HDAC6-233ENST00000489352 CAMSAP2Q08AD1 1489 aa18.71■□□□□ 0.59
HDAC6-233ENST00000489352 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.68■□□□□ 0.58
HDAC6-233ENST00000489352 C19orf44Q9H6X5 657 aa18.67■□□□□ 0.58
HDAC6-233ENST00000489352 NCOA3Q9Y6Q9 1424 aa18.66■□□□□ 0.58
HDAC6-233ENST00000489352 DIP2AQ14689 1571 aa18.66■□□□□ 0.58
HDAC6-233ENST00000489352 EP400Q96L91 3159 aa18.65■□□□□ 0.58
HDAC6-233ENST00000489352 EHBP1L1Q8N3D4 1523 aa18.65■□□□□ 0.58
HDAC6-233ENST00000489352 LRRC59Q96AG4 307 aaKnown RBP18.65■□□□□ 0.58
HDAC6-233ENST00000489352 ARHGAP31Q2M1Z3 1444 aa18.65■□□□□ 0.58
HDAC6-233ENST00000489352 ARHGEF5Q12774 1597 aa18.64■□□□□ 0.58
HDAC6-233ENST00000489352 MROH1Q8NDA8 1641 aa18.64■□□□□ 0.57
HDAC6-233ENST00000489352 PPP1R15AO75807 674 aaPredicted RBP18.63■□□□□ 0.57
HDAC6-233ENST00000489352 IDI1Q13907 227 aa18.63■□□□□ 0.57
HDAC6-233ENST00000489352 BRINP3Q76B58 766 aa18.63■□□□□ 0.57
HDAC6-233ENST00000489352 CEP162Q5TB80 1403 aa18.61■□□□□ 0.57
HDAC6-233ENST00000489352 ADAMTS2O95450 1211 aa18.61■□□□□ 0.57
HDAC6-233ENST00000489352 HDGFP51858 240 aaKnown RBP18.61■□□□□ 0.57
HDAC6-233ENST00000489352 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.61■□□□□ 0.572e-7■■□□□ 14.2
HDAC6-233ENST00000489352 USP21Q9UK80 565 aa18.6■□□□□ 0.57
HDAC6-233ENST00000489352 TRPC5Q9UL62 973 aaPredicted RBP18.6■□□□□ 0.57
HDAC6-233ENST00000489352 LRP5O75197 1615 aa18.6■□□□□ 0.57
HDAC6-233ENST00000489352 SETD5Q9C0A6 1442 aa18.59■□□□□ 0.57
HDAC6-233ENST00000489352 KANK1Q14678 1352 aa18.56■□□□□ 0.56
HDAC6-233ENST00000489352 MAST1Q9Y2H9 1570 aa18.56■□□□□ 0.56
HDAC6-233ENST00000489352 DUOX2Q9NRD8 1548 aa18.55■□□□□ 0.56
HDAC6-233ENST00000489352 SF3B2Q13435 895 aaKnown RBP18.55■□□□□ 0.56
HDAC6-233ENST00000489352 ADGRB3O60242 1522 aa18.54■□□□□ 0.56
HDAC6-233ENST00000489352 ASXL1Q8IXJ9 1541 aa18.54■□□□□ 0.56
HDAC6-233ENST00000489352 NHSL1Q5SYE7 1610 aa18.54■□□□□ 0.56
HDAC6-233ENST00000489352 TBX22Q9Y458 520 aa18.54■□□□□ 0.56
HDAC6-233ENST00000489352 PLEKHG1Q9ULL1 1385 aa18.54■□□□□ 0.56
HDAC6-233ENST00000489352 PNPLA6Q8IY17 1366 aa18.52■□□□□ 0.55
HDAC6-233ENST00000489352 SLC52A1Q9NWF4 448 aa18.51■□□□□ 0.55
HDAC6-233ENST00000489352 MYO5BQ9ULV0 1848 aa18.51■□□□□ 0.55
HDAC6-233ENST00000489352 YY1P25490 414 aa18.48■□□□□ 0.55
HDAC6-233ENST00000489352 BLMP54132 1417 aaPredicted RBP18.48■□□□□ 0.55
HDAC6-233ENST00000489352 DEFB132Q7Z7B7 95 aa18.46■□□□□ 0.55
HDAC6-233ENST00000489352 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.46■□□□□ 0.55
HDAC6-233ENST00000489352 DDX17Q92841 729 aaKnown RBP18.46■□□□□ 0.55
HDAC6-233ENST00000489352 DCCP43146 1447 aa18.46■□□□□ 0.55
HDAC6-233ENST00000489352 RIMS2Q9UQ26 1411 aa18.46■□□□□ 0.55
HDAC6-233ENST00000489352 FNBP4Q8N3X1 1017 aaPredicted RBP18.45■□□□□ 0.54
HDAC6-233ENST00000489352 ATRNO75882 1429 aa18.45■□□□□ 0.54
HDAC6-233ENST00000489352 PIK3R4Q99570 1358 aa18.44■□□□□ 0.54
HDAC6-233ENST00000489352 ERBINQ96RT1 1412 aa18.44■□□□□ 0.54
HDAC6-233ENST00000489352 AMOTL2Q9Y2J4 779 aa18.44■□□□□ 0.54
HDAC6-233ENST00000489352 KIF15Q9NS87 1388 aa18.43■□□□□ 0.54
HDAC6-233ENST00000489352 PSDA5PKW4 1024 aaPredicted RBP18.43■□□□□ 0.54
HDAC6-233ENST00000489352 RRP7BPQ9NSQ0 103 aa18.43■□□□□ 0.54
HDAC6-233ENST00000489352 ZFYVE9O95405 1425 aa18.42■□□□□ 0.54
HDAC6-233ENST00000489352 GCC2Q8IWJ2 1684 aa18.42■□□□□ 0.54
HDAC6-233ENST00000489352 MST1RQ04912 1400 aa18.41■□□□□ 0.54
HDAC6-233ENST00000489352 CHGAP10645 457 aaKnown RBP18.41■□□□□ 0.54
HDAC6-233ENST00000489352 HRCP23327 699 aa18.41■□□□□ 0.54
HDAC6-233ENST00000489352 PTCH1Q13635 1447 aa18.4■□□□□ 0.54
HDAC6-233ENST00000489352 NOS1P29475 1434 aa18.4■□□□□ 0.54
HDAC6-233ENST00000489352 TRPM2O94759 1503 aa18.39■□□□□ 0.54
HDAC6-233ENST00000489352 GJD4Q96KN9 370 aaPredicted RBP18.39■□□□□ 0.53
HDAC6-233ENST00000489352 IFFO2Q5TF58 517 aa18.38■□□□□ 0.53
HDAC6-233ENST00000489352 LMTK2Q8IWU2 1503 aa18.38■□□□□ 0.53
HDAC6-233ENST00000489352 ADAMTS13Q76LX8 1427 aa18.36■□□□□ 0.53
HDAC6-233ENST00000489352 MYOM3Q5VTT5 1437 aa18.35■□□□□ 0.53
HDAC6-233ENST00000489352 BRWD3Q6RI45 1802 aa18.35■□□□□ 0.53
HDAC6-233ENST00000489352 DCAF8L1A6NGE4 600 aa18.34■□□□□ 0.53
HDAC6-233ENST00000489352 MARF1Q9Y4F3 1742 aaKnown RBP18.34■□□□□ 0.53
HDAC6-233ENST00000489352 TMEM131LA2VDJ0 1609 aa18.34■□□□□ 0.53
HDAC6-233ENST00000489352 BAG6P46379 1132 aa18.33■□□□□ 0.52
HDAC6-233ENST00000489352 UNC13BO14795 1591 aa18.33■□□□□ 0.52
HDAC6-233ENST00000489352 BCL9LQ86UU0 1499 aa18.31■□□□□ 0.52
HDAC6-233ENST00000489352 SPHKAPQ2M3C7 1700 aa18.3■□□□□ 0.52
HDAC6-233ENST00000489352 PTPRUQ92729 1446 aa18.3■□□□□ 0.52
HDAC6-233ENST00000489352 CROCC2H7BZ55 1655 aa18.28■□□□□ 0.52
HDAC6-233ENST00000489352 RPRD2Q5VT52 1461 aaKnown RBP18.28■□□□□ 0.52
HDAC6-233ENST00000489352 SOS2Q07890 1332 aaPredicted RBP18.27■□□□□ 0.52
HDAC6-233ENST00000489352 COL22A1Q8NFW1 1626 aaPredicted RBP18.27■□□□□ 0.51
HDAC6-233ENST00000489352 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.26■□□□□ 0.51
HDAC6-233ENST00000489352 R3HDM1Q15032 1099 aaKnown RBP18.26■□□□□ 0.51
HDAC6-233ENST00000489352 ADGRL3Q9HAR2 1447 aa18.25■□□□□ 0.51
HDAC6-233ENST00000489352 LAMC1P11047 1609 aa18.25■□□□□ 0.51
HDAC6-233ENST00000489352 UNC5CLQ8IV45 518 aa18.25■□□□□ 0.51
HDAC6-233ENST00000489352 SEPT12Q8IYM1 358 aa18.25■□□□□ 0.51
HDAC6-233ENST00000489352 XRN1Q8IZH2 1706 aaKnown RBP18.25■□□□□ 0.51
HDAC6-233ENST00000489352 RALGAPBQ86X10 1494 aa18.25■□□□□ 0.51
HDAC6-233ENST00000489352 C1orf167Q5SNV9 1468 aa18.24■□□□□ 0.51
HDAC6-233ENST00000489352 NALCNQ8IZF0 1738 aa18.23■□□□□ 0.51
HDAC6-233ENST00000489352 SENP3-EIF4A1A0A087X0R7 540 aa18.23■□□□□ 0.51
HDAC6-233ENST00000489352 KRT27Q7Z3Y8 459 aa18.23■□□□□ 0.51
HDAC6-233ENST00000489352 ORAI2Q96SN7 254 aa18.23■□□□□ 0.51
HDAC6-233ENST00000489352 GLI3P10071 1580 aa18.22■□□□□ 0.51
HDAC6-233ENST00000489352 ANKRD30AQ9BXX3 1397 aa18.22■□□□□ 0.51
HDAC6-233ENST00000489352 CCDC9Q9Y3X0 531 aaKnown RBP18.21■□□□□ 0.51
HDAC6-233ENST00000489352 A0A0G2JS52 829 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 150.6 ms