RNA–Protein interactions for RNA: ENST00000488765.1

MCF2L-229, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 2

Gene MCF2L, Length 3,205 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-229ENST00000488765 ATP10BO94823 1461 aa20.54■□□□□ 0.88
MCF2L-229ENST00000488765 XPCQ01831 940 aaPredicted RBP20.54■□□□□ 0.88
MCF2L-229ENST00000488765 AEBP2Q6ZN18 517 aaPredicted RBP20.54■□□□□ 0.88
MCF2L-229ENST00000488765 JARID2Q92833 1246 aaPredicted RBP20.54■□□□□ 0.88
MCF2L-229ENST00000488765 CAMSAP2Q08AD1 1489 aa20.54■□□□□ 0.88
MCF2L-229ENST00000488765 BBXQ8WY36 941 aaPredicted RBP20.53■□□□□ 0.88
MCF2L-229ENST00000488765 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.53■□□□□ 0.88
MCF2L-229ENST00000488765 KIF14Q15058 1648 aa20.52■□□□□ 0.88
MCF2L-229ENST00000488765 TCOF1Q13428 1488 aaKnown RBP20.51■□□□□ 0.87
MCF2L-229ENST00000488765 MSNP26038 577 aaKnown RBP20.51■□□□□ 0.87
MCF2L-229ENST00000488765 ANKRD50Q9ULJ7 1429 aa20.51■□□□□ 0.87
MCF2L-229ENST00000488765 CLUAP1Q96AJ1 413 aa20.5■□□□□ 0.87
MCF2L-229ENST00000488765 MAPK8IP2Q13387 824 aaPredicted RBP20.49■□□□□ 0.87
MCF2L-229ENST00000488765 BCL2L13Q9BXK5 485 aa20.49■□□□□ 0.87
MCF2L-229ENST00000488765 GOLGA2Q08379 1002 aa20.49■□□□□ 0.87
MCF2L-229ENST00000488765 CHMP5Q9NZZ3 219 aa20.49■□□□□ 0.87
MCF2L-229ENST00000488765 TSC1Q92574 1164 aa20.48■□□□□ 0.87
MCF2L-229ENST00000488765 RPRD2Q5VT52 1461 aaKnown RBP20.48■□□□□ 0.87
MCF2L-229ENST00000488765 PLEKHH1Q9ULM0 1364 aa20.48■□□□□ 0.87
MCF2L-229ENST00000488765 WDR43Q15061 677 aaKnown RBP eCLIP20.48■□□□□ 0.87
MCF2L-229ENST00000488765 MPNDQ8N594 471 aa20.48■□□□□ 0.87
MCF2L-229ENST00000488765 TBC1D32Q96NH3 1257 aa20.48■□□□□ 0.87
MCF2L-229ENST00000488765 TNNQ9UQP3 1299 aa20.48■□□□□ 0.87
MCF2L-229ENST00000488765 UQCRHLA0A096LP55 91 aa20.47■□□□□ 0.87
MCF2L-229ENST00000488765 UQCRHP07919 91 aa20.47■□□□□ 0.87
MCF2L-229ENST00000488765 NCLP19338 710 aaKnown RBP20.47■□□□□ 0.87
MCF2L-229ENST00000488765 NEUROD2Q15784 382 aa20.47■□□□□ 0.87
MCF2L-229ENST00000488765 PANK3Q9H999 370 aa20.47■□□□□ 0.87
MCF2L-229ENST00000488765 TEX14Q8IWB6 1497 aa20.47■□□□□ 0.87
MCF2L-229ENST00000488765 IGSF3O75054 1194 aa20.46■□□□□ 0.87
MCF2L-229ENST00000488765 NUP160Q12769 1436 aa20.45■□□□□ 0.86
MCF2L-229ENST00000488765 AFAP1Q8N556 730 aa20.45■□□□□ 0.86
MCF2L-229ENST00000488765 CHMP4BQ9H444 224 aaKnown RBP20.44■□□□□ 0.86
MCF2L-229ENST00000488765 FAM177BA6PVY3 158 aa20.44■□□□□ 0.86
MCF2L-229ENST00000488765 NASPP49321 788 aaPredicted RBP20.44■□□□□ 0.86
MCF2L-229ENST00000488765 DMRT2Q9Y5R5 561 aa20.43■□□□□ 0.86
MCF2L-229ENST00000488765 C9orf84Q5VXU9 1444 aa20.42■□□□□ 0.86
MCF2L-229ENST00000488765 VGLL3A8MV65 326 aa20.42■□□□□ 0.86
MCF2L-229ENST00000488765 APAF1O14727 1248 aa20.42■□□□□ 0.86
MCF2L-229ENST00000488765 ZSCAN30Q86W11 494 aa20.42■□□□□ 0.86
MCF2L-229ENST00000488765 TNPO1Q92973 898 aaKnown RBP20.42■□□□□ 0.86
MCF2L-229ENST00000488765 ROCK1Q13464 1354 aa20.42■□□□□ 0.86
MCF2L-229ENST00000488765 OFD1O75665 1012 aa20.41■□□□□ 0.86
MCF2L-229ENST00000488765 C22orf23Q9BZE7 217 aa20.41■□□□□ 0.86
MCF2L-229ENST00000488765 PDZRN3Q9UPQ7 1066 aa20.41■□□□□ 0.86
MCF2L-229ENST00000488765 ANP32BQ92688 251 aaKnown RBP20.4■□□□□ 0.86
MCF2L-229ENST00000488765 NBPF1Q3BBV0 1214 aa20.4■□□□□ 0.86
MCF2L-229ENST00000488765 CENPJQ9HC77 1338 aaPredicted RBP20.39■□□□□ 0.86
MCF2L-229ENST00000488765 CBX1P83916 185 aa20.39■□□□□ 0.85
MCF2L-229ENST00000488765 PER1O15534 1290 aaPredicted RBP20.38■□□□□ 0.85
MCF2L-229ENST00000488765 PCDHB15Q9Y5E8 787 aa20.38■□□□□ 0.85
MCF2L-229ENST00000488765 ROCK2O75116 1388 aaKnown RBP20.38■□□□□ 0.85
MCF2L-229ENST00000488765 PLCD3Q8N3E9 789 aa20.38■□□□□ 0.85
MCF2L-229ENST00000488765 HSCBQ8IWL3 235 aa20.37■□□□□ 0.85
MCF2L-229ENST00000488765 DDX11L8A8MPP1 907 aa20.37■□□□□ 0.85
MCF2L-229ENST00000488765 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.35■□□□□ 0.85
MCF2L-229ENST00000488765 ERCC6L2Q5T890 1561 aa20.35■□□□□ 0.85
MCF2L-229ENST00000488765 MAPK8IP3Q9UPT6 1336 aa20.35■□□□□ 0.85
MCF2L-229ENST00000488765 SLFN5Q08AF3 891 aa20.34■□□□□ 0.85
MCF2L-229ENST00000488765 PZPP20742 1482 aa20.34■□□□□ 0.85
MCF2L-229ENST00000488765 KIAA1107Q9UPP5 1409 aa20.34■□□□□ 0.85
MCF2L-229ENST00000488765 HSP90AB1P08238 724 aaKnown RBP20.33■□□□□ 0.85
MCF2L-229ENST00000488765 CHGAP10645 457 aaKnown RBP20.33■□□□□ 0.85
MCF2L-229ENST00000488765 ZBTB22O15209 634 aa20.33■□□□□ 0.84
MCF2L-229ENST00000488765 DDX49Q9Y6V7 483 aaKnown RBP20.32■□□□□ 0.84
MCF2L-229ENST00000488765 PARD3Q8TEW0 1356 aa20.32■□□□□ 0.84
MCF2L-229ENST00000488765 DNMT1P26358 1616 aaKnown RBP20.32■□□□□ 0.84
MCF2L-229ENST00000488765 GTF2E1P29083 439 aaPredicted RBP20.32■□□□□ 0.84
MCF2L-229ENST00000488765 RRP7AQ9Y3A4 280 aaKnown RBP20.32■□□□□ 0.84
MCF2L-229ENST00000488765 EFCAB2Q5VUJ9 269 aa20.31■□□□□ 0.84
MCF2L-229ENST00000488765 RLBP1P12271 317 aa20.31■□□□□ 0.84
MCF2L-229ENST00000488765 CCDC173Q0VFZ6 552 aa20.3■□□□□ 0.84
MCF2L-229ENST00000488765 DNTTIP2Q5QJE6 756 aaKnown RBP20.3■□□□□ 0.84
MCF2L-229ENST00000488765 NLRP1Q9C000 1473 aa20.3■□□□□ 0.84
MCF2L-229ENST00000488765 ARHGAP5Q13017 1502 aa20.3■□□□□ 0.84
MCF2L-229ENST00000488765 SPDYE4A6NLX3 237 aa20.29■□□□□ 0.84
MCF2L-229ENST00000488765 TPRNQ4KMQ1 711 aa20.29■□□□□ 0.84
MCF2L-229ENST00000488765 SMAP1Q8IYB5 467 aaPredicted RBP20.28■□□□□ 0.84
MCF2L-229ENST00000488765 NAP1L2Q9ULW6 460 aaPredicted RBP20.28■□□□□ 0.84
MCF2L-229ENST00000488765 SSFA2P28290 1259 aa20.28■□□□□ 0.84
MCF2L-229ENST00000488765 CAVIN1Q6NZI2 390 aaKnown RBP20.27■□□□□ 0.84
MCF2L-229ENST00000488765 CHAMP1Q96JM3 812 aa20.27■□□□□ 0.84
MCF2L-229ENST00000488765 RBM42Q9BTD8 480 aaKnown RBP20.27■□□□□ 0.84
MCF2L-229ENST00000488765 GCC2Q8IWJ2 1684 aa20.26■□□□□ 0.83
MCF2L-229ENST00000488765 ZNF692Q9BU19 519 aaPredicted RBP20.26■□□□□ 0.83
MCF2L-229ENST00000488765 KIF3BO15066 747 aa20.26■□□□□ 0.83
MCF2L-229ENST00000488765 RNF214Q8ND24 703 aa20.26■□□□□ 0.83
MCF2L-229ENST00000488765 STAC3Q96MF2 364 aa20.25■□□□□ 0.83
MCF2L-229ENST00000488765 ZSCAN20P17040 1043 aaPredicted RBP20.25■□□□□ 0.83
MCF2L-229ENST00000488765 GBP4Q96PP9 640 aa20.25■□□□□ 0.83
MCF2L-229ENST00000488765 CD2BP2O95400 341 aaKnown RBP20.25■□□□□ 0.83
MCF2L-229ENST00000488765 PPP2R1AP30153 589 aa20.23■□□□□ 0.83
MCF2L-229ENST00000488765 PPP4R3BQ5MIZ7 849 aa20.23■□□□□ 0.83
MCF2L-229ENST00000488765 SPAG9O60271 1321 aaKnown RBP20.23■□□□□ 0.83
MCF2L-229ENST00000488765 FOXD4L5Q5VV16 416 aaPredicted RBP20.23■□□□□ 0.83
MCF2L-229ENST00000488765 FOXD4L4Q8WXT5 416 aaPredicted RBP20.23■□□□□ 0.83
MCF2L-229ENST00000488765 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.23■□□□□ 0.83
MCF2L-229ENST00000488765 MAP7D2Q96T17 732 aa20.22■□□□□ 0.83
MCF2L-229ENST00000488765 CGNL1Q0VF96 1302 aa20.22■□□□□ 0.83
MCF2L-229ENST00000488765 RBM27Q9P2N5 1060 aaKnown RBP20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms