RNA–Protein interactions for RNA: ENST00000488228.1

UBE4B-210, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-210ENST00000488228 SPATA31E1Q6ZUB1 1445 aa16.26■□□□□ 0.19
UBE4B-210ENST00000488228 MED14O60244 1454 aa16.25■□□□□ 0.19
UBE4B-210ENST00000488228 NPHP4O75161 1426 aaPredicted RBP16.25■□□□□ 0.19
UBE4B-210ENST00000488228 NRXN3Q9Y4C0 1643 aa16.24■□□□□ 0.19
UBE4B-210ENST00000488228 LTKP29376 864 aa16.22■□□□□ 0.19
UBE4B-210ENST00000488228 ZNF326Q5BKZ1 582 aaKnown RBP16.21■□□□□ 0.19
UBE4B-210ENST00000488228 ANKLE2Q86XL3 938 aa16.21■□□□□ 0.19
UBE4B-210ENST00000488228 SETD1AO15047 1707 aaKnown RBP16.21■□□□□ 0.19
UBE4B-210ENST00000488228 STRCP1A6NGW2 1772 aa16.21■□□□□ 0.18
UBE4B-210ENST00000488228 NUTM2DQ5VT03 806 aaPredicted RBP16.2■□□□□ 0.18
UBE4B-210ENST00000488228 TXNDC2Q86VQ3 553 aa16.2■□□□□ 0.18
UBE4B-210ENST00000488228 SENP3Q9H4L4 574 aaPredicted RBP16.2■□□□□ 0.18
UBE4B-210ENST00000488228 SETBP1Q9Y6X0 1596 aa16.19■□□□□ 0.18
UBE4B-210ENST00000488228 PPP1R15AO75807 674 aaPredicted RBP16.18■□□□□ 0.18
UBE4B-210ENST00000488228 EID1Q9Y6B2 187 aa16.18■□□□□ 0.18
UBE4B-210ENST00000488228 DIP2AQ14689 1571 aa16.17■□□□□ 0.18
UBE4B-210ENST00000488228 PLEKHG1Q9ULL1 1385 aa16.17■□□□□ 0.18
UBE4B-210ENST00000488228 RGL3Q3MIN7 710 aa16.15■□□□□ 0.18
UBE4B-210ENST00000488228 MYOM2P54296 1465 aa16.15■□□□□ 0.18
UBE4B-210ENST00000488228 ADAMTS13Q76LX8 1427 aa16.14■□□□□ 0.17
UBE4B-210ENST00000488228 DMRT2Q9Y5R5 561 aa16.14■□□□□ 0.17
UBE4B-210ENST00000488228 CHD2O14647 1828 aaKnown RBP16.14■□□□□ 0.17
UBE4B-210ENST00000488228 NWD1Q149M9 1564 aa16.13■□□□□ 0.17
UBE4B-210ENST00000488228 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.13■□□□□ 0.17
UBE4B-210ENST00000488228 LAMC1P11047 1609 aa16.12■□□□□ 0.17
UBE4B-210ENST00000488228 LTBP4Q8N2S1 1624 aa16.12■□□□□ 0.17
UBE4B-210ENST00000488228 XRN1Q8IZH2 1706 aaKnown RBP16.11■□□□□ 0.17
UBE4B-210ENST00000488228 SIN3AQ96ST3 1273 aa16.11■□□□□ 0.17
UBE4B-210ENST00000488228 ZNF335Q9H4Z2 1342 aaPredicted RBP16.11■□□□□ 0.17
UBE4B-210ENST00000488228 ALKQ9UM73 1620 aa16.11■□□□□ 0.17
UBE4B-210ENST00000488228 NRXN1Q9ULB1 1477 aa16.1■□□□□ 0.17
UBE4B-210ENST00000488228 BCANQ96GW7 911 aa16.1■□□□□ 0.17
UBE4B-210ENST00000488228 SLC26A8Q96RN1 970 aa16.1■□□□□ 0.17
UBE4B-210ENST00000488228 RPGRIP1LQ68CZ1 1315 aa16.1■□□□□ 0.17
UBE4B-210ENST00000488228 XIRP1Q702N8 1843 aaKnown RBP16.1■□□□□ 0.17
UBE4B-210ENST00000488228 PIK3C2GO75747 1445 aa16.1■□□□□ 0.17
UBE4B-210ENST00000488228 ASXL1Q8IXJ9 1541 aa16.09■□□□□ 0.17
UBE4B-210ENST00000488228 HDGFP51858 240 aaKnown RBP16.09■□□□□ 0.17
UBE4B-210ENST00000488228 ADGRF5Q8IZF2 1346 aa16.08■□□□□ 0.16
UBE4B-210ENST00000488228 NEUROD1Q13562 356 aa16.07■□□□□ 0.16
UBE4B-210ENST00000488228 CPS1P31327 1500 aa16.05■□□□□ 0.16
UBE4B-210ENST00000488228 VGFO15240 615 aaPredicted RBP16.05■□□□□ 0.16
UBE4B-210ENST00000488228 KNDC1Q76NI1 1749 aa16.05■□□□□ 0.16
UBE4B-210ENST00000488228 KIAA1210Q9ULL0 1709 aa16.05■□□□□ 0.16
UBE4B-210ENST00000488228 NKTRP30414 1462 aaKnown RBP16.03■□□□□ 0.16
UBE4B-210ENST00000488228 PTPRUQ92729 1446 aa16.03■□□□□ 0.16
UBE4B-210ENST00000488228 METP08581 1390 aa16.03■□□□□ 0.16
UBE4B-210ENST00000488228 DCAF11Q8TEB1 546 aa16.03■□□□□ 0.16
UBE4B-210ENST00000488228 TRPM1Q7Z4N2 1603 aa16.03■□□□□ 0.16
UBE4B-210ENST00000488228 LRRC7Q96NW7 1537 aa16.01■□□□□ 0.15
UBE4B-210ENST00000488228 CCER1Q8TC90 406 aaPredicted RBP16.01■□□□□ 0.15
UBE4B-210ENST00000488228 KDM2AQ9Y2K7 1162 aa16.01■□□□□ 0.15
UBE4B-210ENST00000488228 PRAG1Q86YV5 1406 aa16.01■□□□□ 0.15
UBE4B-210ENST00000488228 ADGRB1O14514 1584 aa16■□□□□ 0.15
UBE4B-210ENST00000488228 TBX22Q9Y458 520 aa16■□□□□ 0.15
UBE4B-210ENST00000488228 TONSLQ96HA7 1378 aa16■□□□□ 0.15
UBE4B-210ENST00000488228 PIK3R4Q99570 1358 aa16■□□□□ 0.15
UBE4B-210ENST00000488228 NALCNQ8IZF0 1738 aa15.99■□□□□ 0.15
UBE4B-210ENST00000488228 L3MBTL2Q969R5 705 aa15.99■□□□□ 0.15
UBE4B-210ENST00000488228 ARHGEF28Q8N1W1 1705 aaKnown RBP15.98■□□□□ 0.15
UBE4B-210ENST00000488228 CLSPNQ9HAW4 1339 aa15.97■□□□□ 0.15
UBE4B-210ENST00000488228 KCNA6P17658 529 aa15.96■□□□□ 0.15
UBE4B-210ENST00000488228 CFAP70Q5T0N1 1121 aa15.95■□□□□ 0.14
UBE4B-210ENST00000488228 IQSEC2Q5JU85 1478 aa15.95■□□□□ 0.14
UBE4B-210ENST00000488228 PTCH1Q13635 1447 aa15.94■□□□□ 0.14
UBE4B-210ENST00000488228 YTHDC2Q9H6S0 1430 aaKnown RBP15.94■□□□□ 0.14
UBE4B-210ENST00000488228 TMEM94Q12767 1356 aa15.93■□□□□ 0.14
UBE4B-210ENST00000488228 TMEM132EQ6IEE7 984 aa15.93■□□□□ 0.14
UBE4B-210ENST00000488228 C14orf93Q9H972 538 aaKnown RBP15.93■□□□□ 0.14
UBE4B-210ENST00000488228 ROBO2Q9HCK4 1378 aa15.92■□□□□ 0.14
UBE4B-210ENST00000488228 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.92■□□□□ 0.14
UBE4B-210ENST00000488228 CERKQ8TCT0 537 aa15.92■□□□□ 0.14
UBE4B-210ENST00000488228 RBM33Q96EV2 1170 aaKnown RBP15.92■□□□□ 0.14
UBE4B-210ENST00000488228 AMOTL2Q9Y2J4 779 aa15.92■□□□□ 0.14
UBE4B-210ENST00000488228 TECPR2O15040 1411 aa15.92■□□□□ 0.14
UBE4B-210ENST00000488228 LRPPRCP42704 1394 aaKnown RBP15.91■□□□□ 0.14
UBE4B-210ENST00000488228 STAC3Q96MF2 364 aa15.91■□□□□ 0.14
UBE4B-210ENST00000488228 RALGAPBQ86X10 1494 aa15.91■□□□□ 0.14
UBE4B-210ENST00000488228 DLC1Q96QB1 1528 aa15.9■□□□□ 0.14
UBE4B-210ENST00000488228 PROSER2Q86WR7 435 aaPredicted RBP15.89■□□□□ 0.13
UBE4B-210ENST00000488228 STK26Q9P289 416 aa15.89■□□□□ 0.13
UBE4B-210ENST00000488228 QRICH2Q9H0J4 1663 aa15.89■□□□□ 0.13
UBE4B-210ENST00000488228 ADGRL3Q9HAR2 1447 aa15.87■□□□□ 0.13
UBE4B-210ENST00000488228 NBPF8Q3BBV2 869 aa15.87■□□□□ 0.13
UBE4B-210ENST00000488228 PLEKHH1Q9ULM0 1364 aa15.87■□□□□ 0.13
UBE4B-210ENST00000488228 NBPF1Q3BBV0 1214 aa15.86■□□□□ 0.13
UBE4B-210ENST00000488228 CDC42BPGQ6DT37 1551 aa15.86■□□□□ 0.13
UBE4B-210ENST00000488228 ABCC11Q96J66 1382 aa15.86■□□□□ 0.13
UBE4B-210ENST00000488228 ROCK2O75116 1388 aaKnown RBP15.85■□□□□ 0.13
UBE4B-210ENST00000488228 FMN2Q9NZ56 1722 aa15.85■□□□□ 0.13
UBE4B-210ENST00000488228 ADGRB2O60241 1585 aa15.84■□□□□ 0.13
UBE4B-210ENST00000488228 FAM135BQ49AJ0 1406 aa15.84■□□□□ 0.13
UBE4B-210ENST00000488228 C14orf37Q86TY3 774 aa15.83■□□□□ 0.12
UBE4B-210ENST00000488228 MSH6P52701 1360 aa15.83■□□□□ 0.12
UBE4B-210ENST00000488228 TRAK1Q9UPV9 953 aa15.82■□□□□ 0.12
UBE4B-210ENST00000488228 NCOA3Q9Y6Q9 1424 aa15.82■□□□□ 0.12
UBE4B-210ENST00000488228 RGPD8O14715 1765 aaPredicted RBP15.82■□□□□ 0.12
UBE4B-210ENST00000488228 GPRASP1Q5JY77 1395 aa15.81■□□□□ 0.12
UBE4B-210ENST00000488228 ROBO1Q9Y6N7 1651 aa15.81■□□□□ 0.12
UBE4B-210ENST00000488228 DCCP43146 1447 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms