RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 MYT1LQ9UL68 1186 aa11.07□□□□□ -0.64
HDAC3-209ENST00000486618 CDK13Q14004 1512 aaKnown RBP11.06□□□□□ -0.64
HDAC3-209ENST00000486618 ESF1Q9H501 851 aaKnown RBP11.06□□□□□ -0.64
HDAC3-209ENST00000486618 ATP1B4Q9UN42 357 aaPredicted RBP11.06□□□□□ -0.64
HDAC3-209ENST00000486618 MYO5CQ9NQX4 1742 aa11.06□□□□□ -0.64
HDAC3-209ENST00000486618 STRCQ7RTU9 1775 aa11.05□□□□□ -0.64
HDAC3-209ENST00000486618 ZNF518AQ6AHZ1 1483 aa11.05□□□□□ -0.64
HDAC3-209ENST00000486618 PTPRTO14522 1441 aa11.04□□□□□ -0.64
HDAC3-209ENST00000486618 FMN1Q68DA7 1419 aa11.02□□□□□ -0.64
HDAC3-209ENST00000486618 AFAP1Q8N556 730 aa11.02□□□□□ -0.65
HDAC3-209ENST00000486618 ARHGAP5Q13017 1502 aa11.01□□□□□ -0.65
HDAC3-209ENST00000486618 PPP1R37O75864 691 aa11.01□□□□□ -0.65
HDAC3-209ENST00000486618 PRKCSHP14314 528 aaPredicted RBP11.01□□□□□ -0.65
HDAC3-209ENST00000486618 NKX1-1Q15270 411 aaPredicted RBP11.01□□□□□ -0.65
HDAC3-209ENST00000486618 CLIP1P30622 1438 aa11.01□□□□□ -0.65
HDAC3-209ENST00000486618 KDM5CP41229 1560 aa11□□□□□ -0.65
HDAC3-209ENST00000486618 SPATA31D1Q6ZQQ2 1576 aa11□□□□□ -0.65
HDAC3-209ENST00000486618 TRAPPC8Q9Y2L5 1435 aa11□□□□□ -0.65
HDAC3-209ENST00000486618 IQSEC2Q5JU85 1478 aa11□□□□□ -0.65
HDAC3-209ENST00000486618 REREQ9P2R6 1566 aa10.99□□□□□ -0.65
HDAC3-209ENST00000486618 KIF14Q15058 1648 aa10.99□□□□□ -0.65
HDAC3-209ENST00000486618 HOXB3P14651 431 aaPredicted RBP10.99□□□□□ -0.65
HDAC3-209ENST00000486618 UBTFP17480 764 aaKnown RBP10.99□□□□□ -0.65
HDAC3-209ENST00000486618 TROQ12816 1431 aaPredicted RBP10.99□□□□□ -0.65
HDAC3-209ENST00000486618 MLH3Q9UHC1 1453 aa10.98□□□□□ -0.65
HDAC3-209ENST00000486618 DIP2CQ9Y2E4 1556 aa10.98□□□□□ -0.65
HDAC3-209ENST00000486618 C3P01024 1663 aa10.98□□□□□ -0.65
HDAC3-209ENST00000486618 CNTLNQ9NXG0 1405 aa10.97□□□□□ -0.65
HDAC3-209ENST00000486618 AGLP35573 1532 aa10.97□□□□□ -0.65
HDAC3-209ENST00000486618 LTBP4Q8N2S1 1624 aa10.96□□□□□ -0.65
HDAC3-209ENST00000486618 NCOA1Q15788 1441 aa10.95□□□□□ -0.66
HDAC3-209ENST00000486618 MARVELD3Q96A59 401 aa10.95□□□□□ -0.66
HDAC3-209ENST00000486618 ABCA6Q8N139 1617 aa10.95□□□□□ -0.66
HDAC3-209ENST00000486618 DOK7Q18PE1 504 aa10.94□□□□□ -0.66
HDAC3-209ENST00000486618 CDC42BPBQ9Y5S2 1711 aa10.94□□□□□ -0.66
HDAC3-209ENST00000486618 KIF3CO14782 793 aa10.93□□□□□ -0.66
HDAC3-209ENST00000486618 ARHGAP35Q9NRY4 1499 aa10.93□□□□□ -0.66
HDAC3-209ENST00000486618 NPATQ14207 1427 aa10.92□□□□□ -0.66
HDAC3-209ENST00000486618 UBAP1LF5GYI3 381 aa10.91□□□□□ -0.66
HDAC3-209ENST00000486618 ZNF710Q8N1W2 664 aa10.91□□□□□ -0.66
HDAC3-209ENST00000486618 PCDH10Q9P2E7 1040 aa10.91□□□□□ -0.66
HDAC3-209ENST00000486618 CAMSAP1Q5T5Y3 1602 aa10.91□□□□□ -0.66
HDAC3-209ENST00000486618 PREX2Q70Z35 1606 aa10.91□□□□□ -0.66
HDAC3-209ENST00000486618 ZMYM3Q14202 1370 aa10.9□□□□□ -0.66
HDAC3-209ENST00000486618 KIDINS220Q9ULH0 1771 aa10.9□□□□□ -0.66
HDAC3-209ENST00000486618 ABCC1P33527 1531 aa10.9□□□□□ -0.66
HDAC3-209ENST00000486618 MROH2AA6NES4 1674 aa10.9□□□□□ -0.66
HDAC3-209ENST00000486618 ITSN2Q9NZM3 1697 aa10.9□□□□□ -0.66
HDAC3-209ENST00000486618 C2orf72A6NCS6 295 aa10.9□□□□□ -0.66
HDAC3-209ENST00000486618 NCKAP5LQ9HCH0 1330 aa10.89□□□□□ -0.67
HDAC3-209ENST00000486618 EMP3P54852 163 aa10.89□□□□□ -0.67
HDAC3-209ENST00000486618 RYDENQ9NUL5 291 aaKnown RBP10.89□□□□□ -0.67
HDAC3-209ENST00000486618 SPAG9O60271 1321 aaKnown RBP10.88□□□□□ -0.67
HDAC3-209ENST00000486618 ZNF335Q9H4Z2 1342 aaPredicted RBP10.88□□□□□ -0.67
HDAC3-209ENST00000486618 CCDC18Q5T9S5 1454 aa10.88□□□□□ -0.67
HDAC3-209ENST00000486618 ZNF777Q9ULD5 760 aaPredicted RBP10.88□□□□□ -0.67
HDAC3-209ENST00000486618 LRRIQ1Q96JM4 1722 aa10.87□□□□□ -0.67
HDAC3-209ENST00000486618 RIMBP2O15034 1052 aa10.87□□□□□ -0.67
HDAC3-209ENST00000486618 HOMEZQ8IX15 550 aa10.87□□□□□ -0.67
HDAC3-209ENST00000486618 PLA2R1Q13018 1463 aa10.87□□□□□ -0.67
HDAC3-209ENST00000486618 HOXB1P14653 301 aaPredicted RBP10.86□□□□□ -0.67
HDAC3-209ENST00000486618 CDAN1Q8IWY9 1227 aa10.86□□□□□ -0.67
HDAC3-209ENST00000486618 SUPT6HQ7KZ85 1726 aaKnown RBP10.86□□□□□ -0.67
HDAC3-209ENST00000486618 SAMD9LQ8IVG5 1584 aa10.86□□□□□ -0.67
HDAC3-209ENST00000486618 CASKIN1Q8WXD9 1431 aa10.85□□□□□ -0.67
HDAC3-209ENST00000486618 CDC42BPAQ5VT25 1732 aa10.85□□□□□ -0.67
HDAC3-209ENST00000486618 GTPBP6O43824 516 aaPredicted RBP10.85□□□□□ -0.67
HDAC3-209ENST00000486618 TMC2Q8TDI7 906 aa10.85□□□□□ -0.67
HDAC3-209ENST00000486618 TIMELESSQ9UNS1 1208 aa10.85□□□□□ -0.67
HDAC3-209ENST00000486618 HNRNPMP52272 730 aaKnown RBP eCLIP10.84□□□□□ -0.67
HDAC3-209ENST00000486618 GGT6Q6P531 493 aa10.84□□□□□ -0.67
HDAC3-209ENST00000486618 ZSWIM6Q9HCJ5 1215 aa10.84□□□□□ -0.67
HDAC3-209ENST00000486618 ZNF142P52746 1687 aaPredicted RBP10.83□□□□□ -0.68
HDAC3-209ENST00000486618 CLTCQ00610 1675 aaKnown RBP10.83□□□□□ -0.68
HDAC3-209ENST00000486618 CEP170BQ9Y4F5 1589 aaPredicted RBP10.82□□□□□ -0.68
HDAC3-209ENST00000486618 TCOF1Q13428 1488 aaKnown RBP10.82□□□□□ -0.68
HDAC3-209ENST00000486618 PLEKHH2Q8IVE3 1493 aa10.82□□□□□ -0.68
HDAC3-209ENST00000486618 FAM205CA6NFA0 338 aa10.82□□□□□ -0.68
HDAC3-209ENST00000486618 TOM1O60784 492 aa10.82□□□□□ -0.68
HDAC3-209ENST00000486618 MYO3AQ8NEV4 1616 aa10.82□□□□□ -0.68
HDAC3-209ENST00000486618 PTPRKQ15262 1439 aa10.82□□□□□ -0.68
HDAC3-209ENST00000486618 KIAA1107Q9UPP5 1409 aa10.82□□□□□ -0.68
HDAC3-209ENST00000486618 A2MP01023 1474 aa10.81□□□□□ -0.68
HDAC3-209ENST00000486618 ATP7AQ04656 1500 aa10.81□□□□□ -0.68
HDAC3-209ENST00000486618 SYCP2Q9BX26 1530 aa10.81□□□□□ -0.68
HDAC3-209ENST00000486618 POTEB3A0JP26 581 aa10.81□□□□□ -0.68
HDAC3-209ENST00000486618 GPR153Q6NV75 609 aa10.81□□□□□ -0.68
HDAC3-209ENST00000486618 POTEBQ6S5H4 581 aa10.81□□□□□ -0.68
HDAC3-209ENST00000486618 BCANQ96GW7 911 aa10.81□□□□□ -0.68
HDAC3-209ENST00000486618 HS3ST6Q96QI5 342 aa10.81□□□□□ -0.68
HDAC3-209ENST00000486618 CFDP1Q9UEE9 299 aaPredicted RBP10.81□□□□□ -0.68
HDAC3-209ENST00000486618 GPATCH8Q9UKJ3 1502 aaKnown RBP10.8□□□□□ -0.68
HDAC3-209ENST00000486618 HSPA1LP34931 641 aa10.79□□□□□ -0.68
HDAC3-209ENST00000486618 PIP4K2BP78356 416 aa10.79□□□□□ -0.68
HDAC3-209ENST00000486618 PLSCR2Q9NRY7 297 aa10.79□□□□□ -0.68
HDAC3-209ENST00000486618 A2ML1A8K2U0 1454 aa10.79□□□□□ -0.68
HDAC3-209ENST00000486618 FYCO1Q9BQS8 1478 aa10.79□□□□□ -0.68
HDAC3-209ENST00000486618 CCNB3Q8WWL7 1395 aa10.78□□□□□ -0.68
HDAC3-209ENST00000486618 PLXNC1O60486 1568 aa10.78□□□□□ -0.68
HDAC3-209ENST00000486618 GPHNQ9NQX3 736 aaPredicted RBP10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms