RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 PIP4K2BP78356 416 aa25.46■■□□□ 1.67
VIM-205ENST00000485947 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.44■■□□□ 1.66
VIM-205ENST00000485947 TMEM131LA2VDJ0 1609 aa25.41■■□□□ 1.66
VIM-205ENST00000485947 ZFYVE9O95405 1425 aa25.41■■□□□ 1.66
VIM-205ENST00000485947 ACIN1Q9UKV3 1341 aaKnown RBP25.4■■□□□ 1.66
VIM-205ENST00000485947 PLEKHG1Q9ULL1 1385 aa25.39■■□□□ 1.65
VIM-205ENST00000485947 RIMS2Q9UQ26 1411 aa25.38■■□□□ 1.65
VIM-205ENST00000485947 LRRC7Q96NW7 1537 aa25.38■■□□□ 1.65
VIM-205ENST00000485947 ALKQ9UM73 1620 aa25.38■■□□□ 1.65
VIM-205ENST00000485947 KCNA6P17658 529 aa25.37■■□□□ 1.65
VIM-205ENST00000485947 PHF23Q9BUL5 403 aaPredicted RBP25.37■■□□□ 1.65
VIM-205ENST00000485947 PPP1R15AO75807 674 aaPredicted RBP25.36■■□□□ 1.65
VIM-205ENST00000485947 CHGAP10645 457 aaKnown RBP25.34■■□□□ 1.65
VIM-205ENST00000485947 STRCP1A6NGW2 1772 aa25.32■■□□□ 1.64
VIM-205ENST00000485947 TBX22Q9Y458 520 aa25.32■■□□□ 1.64
VIM-205ENST00000485947 TRIM52Q96A61 297 aa25.31■■□□□ 1.64
VIM-205ENST00000485947 BCANQ96GW7 911 aa25.31■■□□□ 1.64
VIM-205ENST00000485947 SLC26A8Q96RN1 970 aa25.31■■□□□ 1.64
VIM-205ENST00000485947 SPHKAPQ2M3C7 1700 aa25.29■■□□□ 1.64
VIM-205ENST00000485947 NKTRP30414 1462 aaKnown RBP25.28■■□□□ 1.64
VIM-205ENST00000485947 TRPM2O94759 1503 aa25.27■■□□□ 1.64
VIM-205ENST00000485947 PIK3R4Q99570 1358 aa25.27■■□□□ 1.64
VIM-205ENST00000485947 MYO5BQ9ULV0 1848 aa25.26■■□□□ 1.63
VIM-205ENST00000485947 SLC4A1APQ9BWU0 796 aaKnown RBP25.26■■□□□ 1.63
VIM-205ENST00000485947 NWD1Q149M9 1564 aa25.25■■□□□ 1.63
VIM-205ENST00000485947 DIP2AQ14689 1571 aa25.24■■□□□ 1.63
VIM-205ENST00000485947 PROSER2Q86WR7 435 aaPredicted RBP25.22■■□□□ 1.63
VIM-205ENST00000485947 TMEM94Q12767 1356 aa25.21■■□□□ 1.63
VIM-205ENST00000485947 ADAMTS13Q76LX8 1427 aa25.2■■□□□ 1.63
VIM-205ENST00000485947 NCOA3Q9Y6Q9 1424 aa25.2■■□□□ 1.63
VIM-205ENST00000485947 RGS17Q9UGC6 210 aaPredicted RBP25.2■■□□□ 1.62
VIM-205ENST00000485947 ZNF326Q5BKZ1 582 aaKnown RBP25.19■■□□□ 1.62
VIM-205ENST00000485947 RPGRIP1LQ68CZ1 1315 aa25.16■■□□□ 1.62
VIM-205ENST00000485947 CLTCL1P53675 1640 aa25.16■■□□□ 1.62
VIM-205ENST00000485947 CHD2O14647 1828 aaKnown RBP25.15■■□□□ 1.62
VIM-205ENST00000485947 NUTM2DQ5VT03 806 aaPredicted RBP25.14■■□□□ 1.62
VIM-205ENST00000485947 SETBP1Q9Y6X0 1596 aa25.14■■□□□ 1.61
VIM-205ENST00000485947 SETD5Q9C0A6 1442 aa25.13■■□□□ 1.61
VIM-205ENST00000485947 VGFO15240 615 aaPredicted RBP25.13■■□□□ 1.61
VIM-205ENST00000485947 MPHOSPH9Q99550 1183 aa25.13■■□□□ 1.61
VIM-205ENST00000485947 XIRP1Q702N8 1843 aaKnown RBP25.13■■□□□ 1.61
VIM-205ENST00000485947 FAM135BQ49AJ0 1406 aa25.12■■□□□ 1.61
VIM-205ENST00000485947 MSH6P52701 1360 aa25.12■■□□□ 1.61
VIM-205ENST00000485947 KIF1BO60333 1816 aa25.12■■□□□ 1.61
VIM-205ENST00000485947 SENP3Q9H4L4 574 aaPredicted RBP25.1■■□□□ 1.61
VIM-205ENST00000485947 NEXMIFQ5QGS0 1516 aa25.1■■□□□ 1.61
VIM-205ENST00000485947 AMOTL2Q9Y2J4 779 aa25.07■■□□□ 1.6
VIM-205ENST00000485947 CCDC144AA2RUR9 1427 aa25.06■■□□□ 1.6
VIM-205ENST00000485947 HRCP23327 699 aa25.05■■□□□ 1.6
VIM-205ENST00000485947 C19orf44Q9H6X5 657 aa25.04■■□□□ 1.6
VIM-205ENST00000485947 NRXN3Q9Y4C0 1643 aa25.04■■□□□ 1.6
VIM-205ENST00000485947 CADPS2Q86UW7 1296 aa25.02■■□□□ 1.6
VIM-205ENST00000485947 RBM33Q96EV2 1170 aaKnown RBP25.01■■□□□ 1.59
VIM-205ENST00000485947 SLAIN2Q9P270 581 aa25.01■■□□□ 1.59
VIM-205ENST00000485947 PTPRUQ92729 1446 aa25.01■■□□□ 1.59
VIM-205ENST00000485947 FOXD1Q16676 465 aa25■■□□□ 1.59
VIM-205ENST00000485947 RAB3GAP2Q9H2M9 1393 aa25■■□□□ 1.59
VIM-205ENST00000485947 METP08581 1390 aa24.99■■□□□ 1.59
VIM-205ENST00000485947 POTEAQ6S8J7 498 aa24.99■■□□□ 1.59
VIM-205ENST00000485947 C14orf37Q86TY3 774 aa24.99■■□□□ 1.59
VIM-205ENST00000485947 DCCP43146 1447 aa24.97■■□□□ 1.59
VIM-205ENST00000485947 ANKRD30BQ9BXX2 1392 aa24.97■■□□□ 1.59
VIM-205ENST00000485947 XRN1Q8IZH2 1706 aaKnown RBP24.97■■□□□ 1.59
VIM-205ENST00000485947 SPATA31E1Q6ZUB1 1445 aa24.96■■□□□ 1.59
VIM-205ENST00000485947 ATF3P18847 181 aa24.96■■□□□ 1.59
VIM-205ENST00000485947 PRAG1Q86YV5 1406 aa24.95■■□□□ 1.58
VIM-205ENST00000485947 PPLO60437 1756 aa24.91■■□□□ 1.58
VIM-205ENST00000485947 ROBO1Q9Y6N7 1651 aa24.91■■□□□ 1.58
VIM-205ENST00000485947 PTCH1Q13635 1447 aa24.9■■□□□ 1.58
VIM-205ENST00000485947 RGL3Q3MIN7 710 aa24.88■■□□□ 1.57
VIM-205ENST00000485947 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.88■■□□□ 1.57
VIM-205ENST00000485947 ADGRL3Q9HAR2 1447 aa24.86■■□□□ 1.57
VIM-205ENST00000485947 SETD1AO15047 1707 aaKnown RBP24.85■■□□□ 1.57
VIM-205ENST00000485947 ADGRF5Q8IZF2 1346 aa24.84■■□□□ 1.57
VIM-205ENST00000485947 STAC3Q96MF2 364 aa24.81■■□□□ 1.56
VIM-205ENST00000485947 PIK3C2GO75747 1445 aa24.8■■□□□ 1.56
VIM-205ENST00000485947 IFT172Q9UG01 1749 aa24.8■■□□□ 1.56
VIM-205ENST00000485947 DHX57Q6P158 1386 aaKnown RBP24.8■■□□□ 1.56
VIM-205ENST00000485947 CCER1Q8TC90 406 aaPredicted RBP24.79■■□□□ 1.56
VIM-205ENST00000485947 ROBO2Q9HCK4 1378 aa24.79■■□□□ 1.56
VIM-205ENST00000485947 JCADQ9P266 1359 aa24.79■■□□□ 1.56
VIM-205ENST00000485947 TECPR2O15040 1411 aa24.78■■□□□ 1.56
VIM-205ENST00000485947 MST1RQ04912 1400 aa24.78■■□□□ 1.56
VIM-205ENST00000485947 MYOM2P54296 1465 aa24.77■■□□□ 1.56
VIM-205ENST00000485947 BRINP3Q76B58 766 aa24.77■■□□□ 1.56
VIM-205ENST00000485947 ABCC11Q96J66 1382 aa24.77■■□□□ 1.56
VIM-205ENST00000485947 NRXN1Q9ULB1 1477 aa24.77■■□□□ 1.56
VIM-205ENST00000485947 AHDC1Q5TGY3 1603 aaPredicted RBP24.76■■□□□ 1.55
VIM-205ENST00000485947 LRPPRCP42704 1394 aaKnown RBP24.76■■□□□ 1.55
VIM-205ENST00000485947 SIRT1Q96EB6 747 aa24.75■■□□□ 1.55
VIM-205ENST00000485947 C14orf93Q9H972 538 aaKnown RBP24.75■■□□□ 1.55
VIM-205ENST00000485947 PHLPP1O60346 1717 aa24.75■■□□□ 1.55
VIM-205ENST00000485947 CLSPNQ9HAW4 1339 aa24.74■■□□□ 1.55
VIM-205ENST00000485947 SPATA31A6Q5VVP1 1343 aa24.71■■□□□ 1.55
VIM-205ENST00000485947 COL16A1Q07092 1604 aaPredicted RBP24.71■■□□□ 1.55
VIM-205ENST00000485947 NALCNQ8IZF0 1738 aa24.7■■□□□ 1.54
VIM-205ENST00000485947 ASXL1Q8IXJ9 1541 aa24.7■■□□□ 1.54
VIM-205ENST00000485947 LAMC1P11047 1609 aa24.68■■□□□ 1.54
VIM-205ENST00000485947 C1orf167Q5SNV9 1468 aa24.68■■□□□ 1.54
VIM-205ENST00000485947 YTHDC2Q9H6S0 1430 aaKnown RBP24.68■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms