RNA–Protein interactions for RNA: ENST00000484855.2

CTSA-207, Transcript of cathepsin A, humanhuman

TSL 1 (best)

Gene CTSA, Length 2,183 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-207ENST00000484855 PPP6R1Q9UPN7 881 aa23.18■■□□□ 1.3
CTSA-207ENST00000484855 NRXN1Q9ULB1 1477 aa23.18■■□□□ 1.3
CTSA-207ENST00000484855 MYO5BQ9ULV0 1848 aa23.16■■□□□ 1.3
CTSA-207ENST00000484855 ADGRF5Q8IZF2 1346 aa23.15■■□□□ 1.3
CTSA-207ENST00000484855 SCAF11Q99590 1463 aaKnown RBP23.14■■□□□ 1.3
CTSA-207ENST00000484855 ERVK-7P63135 1459 aa23.14■■□□□ 1.29
CTSA-207ENST00000484855 RPGRIP1LQ68CZ1 1315 aa23.13■■□□□ 1.29
CTSA-207ENST00000484855 SLC52A1Q9NWF4 448 aa23.12■■□□□ 1.29
CTSA-207ENST00000484855 NEXMIFQ5QGS0 1516 aa23.11■■□□□ 1.29
CTSA-207ENST00000484855 MLECQ14165 292 aa23.11■■□□□ 1.29
CTSA-207ENST00000484855 TMEM131LA2VDJ0 1609 aa23.1■■□□□ 1.29
CTSA-207ENST00000484855 IDI1Q13907 227 aa23.09■■□□□ 1.29
CTSA-207ENST00000484855 TESK2Q96S53 571 aa23.09■■□□□ 1.29
CTSA-207ENST00000484855 PIK3C2GO75747 1445 aa23.09■■□□□ 1.29
CTSA-207ENST00000484855 SETBP1Q9Y6X0 1596 aa23.09■■□□□ 1.29
CTSA-207ENST00000484855 CFAP70Q5T0N1 1121 aa23.08■■□□□ 1.29
CTSA-207ENST00000484855 EIF3AQ14152 1382 aaKnown RBP23.07■■□□□ 1.28
CTSA-207ENST00000484855 SPATA31D1Q6ZQQ2 1576 aa23.07■■□□□ 1.28
CTSA-207ENST00000484855 TRHP20396 242 aaPredicted RBP23.07■■□□□ 1.28
CTSA-207ENST00000484855 FBXO31Q5XUX0 539 aaPredicted RBP23.06■■□□□ 1.28
CTSA-207ENST00000484855 DISP3Q9P2K9 1392 aa23.06■■□□□ 1.28
CTSA-207ENST00000484855 PRKRIP1Q9H875 184 aaPredicted RBP23.05■■□□□ 1.28
CTSA-207ENST00000484855 TMF1P82094 1093 aa23.04■■□□□ 1.28
CTSA-207ENST00000484855 ESF1Q9H501 851 aaKnown RBP23.02■■□□□ 1.28
CTSA-207ENST00000484855 MYO3AQ8NEV4 1616 aa23.02■■□□□ 1.27
CTSA-207ENST00000484855 VGFO15240 615 aaPredicted RBP23■■□□□ 1.27
CTSA-207ENST00000484855 ADGRB1O14514 1584 aa22.99■■□□□ 1.27
CTSA-207ENST00000484855 C14orf93Q9H972 538 aaKnown RBP22.99■■□□□ 1.27
CTSA-207ENST00000484855 ZFYVE9O95405 1425 aa22.98■■□□□ 1.27
CTSA-207ENST00000484855 ZMYM3Q14202 1370 aa22.97■■□□□ 1.27
CTSA-207ENST00000484855 NUTM2DQ5VT03 806 aaPredicted RBP22.96■■□□□ 1.27
CTSA-207ENST00000484855 KDM5AP29375 1690 aaKnown RBP22.96■■□□□ 1.27
CTSA-207ENST00000484855 STAG3Q9UJ98 1225 aa22.94■■□□□ 1.26
CTSA-207ENST00000484855 QRICH2Q9H0J4 1663 aa22.93■■□□□ 1.26
CTSA-207ENST00000484855 CDCA8Q53HL2 280 aa22.92■■□□□ 1.26
CTSA-207ENST00000484855 A2ML1A8K2U0 1454 aa22.91■■□□□ 1.26
CTSA-207ENST00000484855 ARHGEF28Q8N1W1 1705 aaKnown RBP22.91■■□□□ 1.26
CTSA-207ENST00000484855 MYOM1P52179 1685 aa22.9■■□□□ 1.26
CTSA-207ENST00000484855 DNAJC5Q9H3Z4 198 aa22.9■■□□□ 1.26
CTSA-207ENST00000484855 SLC24A1O60721 1099 aa22.9■■□□□ 1.26
CTSA-207ENST00000484855 CNGB1Q14028 1251 aaPredicted RBP22.89■■□□□ 1.26
CTSA-207ENST00000484855 FER1L4A9Z1Z3 1794 aa22.89■■□□□ 1.25
CTSA-207ENST00000484855 SBNO2Q9Y2G9 1366 aa22.88■■□□□ 1.25
CTSA-207ENST00000484855 TMEM132EQ6IEE7 984 aa22.88■■□□□ 1.25
CTSA-207ENST00000484855 SCAF1Q9H7N4 1312 aaKnown RBP22.88■■□□□ 1.25
CTSA-207ENST00000484855 CCDC184Q52MB2 194 aa22.87■■□□□ 1.25
CTSA-207ENST00000484855 TRAK1Q9UPV9 953 aa22.87■■□□□ 1.25
CTSA-207ENST00000484855 CENPJQ9HC77 1338 aaPredicted RBP22.87■■□□□ 1.25
CTSA-207ENST00000484855 ASXL1Q8IXJ9 1541 aa22.86■■□□□ 1.25
CTSA-207ENST00000484855 KTN1Q86UP2 1357 aaKnown RBP22.86■■□□□ 1.25
CTSA-207ENST00000484855 MRS2Q9HD23 443 aa22.86■■□□□ 1.25
CTSA-207ENST00000484855 TNRQ92752 1358 aa22.86■■□□□ 1.25
CTSA-207ENST00000484855 PANK3Q9H999 370 aa22.84■■□□□ 1.25
CTSA-207ENST00000484855 RIMS2Q9UQ26 1411 aa22.84■■□□□ 1.25
CTSA-207ENST00000484855 C3P01024 1663 aa22.83■■□□□ 1.25
CTSA-207ENST00000484855 ALKQ9UM73 1620 aa22.83■■□□□ 1.24
CTSA-207ENST00000484855 PER1O15534 1290 aaPredicted RBP22.83■■□□□ 1.24
CTSA-207ENST00000484855 UBR1Q8IWV7 1749 aa22.82■■□□□ 1.24
CTSA-207ENST00000484855 RALBP1Q15311 655 aa22.82■■□□□ 1.24
CTSA-207ENST00000484855 SENP3Q9H4L4 574 aaPredicted RBP22.79■■□□□ 1.24
CTSA-207ENST00000484855 SETD1AO15047 1707 aaKnown RBP22.79■■□□□ 1.24
CTSA-207ENST00000484855 GTF3C3Q9Y5Q9 886 aa22.79■■□□□ 1.24
CTSA-207ENST00000484855 PARD3Q8TEW0 1356 aa22.78■■□□□ 1.24
CTSA-207ENST00000484855 MYBBP1AQ9BQG0 1328 aaKnown RBP22.77■■□□□ 1.24
CTSA-207ENST00000484855 FAM9BQ8IZU0 186 aa22.75■■□□□ 1.23
CTSA-207ENST00000484855 NRXN3Q9Y4C0 1643 aa22.75■■□□□ 1.23
CTSA-207ENST00000484855 YTHDC2Q9H6S0 1430 aaKnown RBP22.75■■□□□ 1.23
CTSA-207ENST00000484855 NLRP1Q9C000 1473 aa22.75■■□□□ 1.23
CTSA-207ENST00000484855 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.74■■□□□ 1.23
CTSA-207ENST00000484855 HNRNPUQ00839 825 aaKnown RBP eCLIP22.73■■□□□ 1.23
CTSA-207ENST00000484855 PTPRMP28827 1452 aa22.73■■□□□ 1.23
CTSA-207ENST00000484855 BRD4O60885 1362 aaPredicted RBP22.72■■□□□ 1.23
CTSA-207ENST00000484855 CC2D1BQ5T0F9 858 aaKnown RBP22.72■■□□□ 1.23
CTSA-207ENST00000484855 STK26Q9P289 416 aa22.72■■□□□ 1.23
CTSA-207ENST00000484855 KNSTRNQ9Y448 316 aa22.72■■□□□ 1.23
CTSA-207ENST00000484855 TULP4Q9NRJ4 1543 aa22.71■■□□□ 1.23
CTSA-207ENST00000484855 CEBPAP49715 358 aaPredicted RBP22.71■■□□□ 1.23
CTSA-207ENST00000484855 TMC1Q8TDI8 760 aa22.7■■□□□ 1.22
CTSA-207ENST00000484855 HDGFP51858 240 aaKnown RBP22.69■■□□□ 1.22
CTSA-207ENST00000484855 TMEM2Q9UHN6 1383 aa22.68■■□□□ 1.22
CTSA-207ENST00000484855 EVC2Q86UK5 1308 aa22.68■■□□□ 1.22
CTSA-207ENST00000484855 NLRP13Q86W25 1043 aa22.67■■□□□ 1.22
CTSA-207ENST00000484855 RIMS1Q86UR5 1692 aaKnown RBP22.66■■□□□ 1.22
CTSA-207ENST00000484855 DLC1Q96QB1 1528 aa22.66■■□□□ 1.22
CTSA-207ENST00000484855 SAFB2Q14151 953 aaKnown RBP eCLIP22.65■■□□□ 1.22
CTSA-207ENST00000484855 AMER1Q5JTC6 1135 aaPredicted RBP22.65■■□□□ 1.22
CTSA-207ENST00000484855 PLPPR3Q6T4P5 718 aa22.65■■□□□ 1.22
CTSA-207ENST00000484855 PUS7Q96PZ0 661 aaKnown RBP22.63■■□□□ 1.21
CTSA-207ENST00000484855 PRAM1Q96QH2 718 aa22.63■■□□□ 1.21
CTSA-207ENST00000484855 KNDC1Q76NI1 1749 aa22.63■■□□□ 1.21
CTSA-207ENST00000484855 LRPPRCP42704 1394 aaKnown RBP22.63■■□□□ 1.21
CTSA-207ENST00000484855 NPC1L1Q9UHC9 1359 aa22.63■■□□□ 1.21
CTSA-207ENST00000484855 POGKQ9P215 609 aa22.63■■□□□ 1.21
CTSA-207ENST00000484855 PNISRQ8TF01 805 aaKnown RBP22.62■■□□□ 1.21
CTSA-207ENST00000484855 SLIT1O75093 1534 aa22.58■■□□□ 1.21
CTSA-207ENST00000484855 ADAMTSL3P82987 1691 aa22.58■■□□□ 1.21
CTSA-207ENST00000484855 MINK1Q8N4C8 1332 aaPredicted RBP22.58■■□□□ 1.21
CTSA-207ENST00000484855 ABCC11Q96J66 1382 aa22.58■■□□□ 1.21
CTSA-207ENST00000484855 BCANQ96GW7 911 aa22.57■■□□□ 1.2
CTSA-207ENST00000484855 CARD14Q9BXL6 1004 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms