RNA–Protein interactions for RNA: ENST00000482399.5

VPS52-218, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2 BASIC

Gene VPS52, Length 3,338 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-218ENST00000482399 SMC4Q9NTJ3 1288 aa16.16■□□□□ 0.18
VPS52-218ENST00000482399 MBD5Q9P267 1494 aa16.16■□□□□ 0.18
VPS52-218ENST00000482399 SLC12A5Q9H2X9 1139 aa16.16■□□□□ 0.18
VPS52-218ENST00000482399 KIF14Q15058 1648 aa16.15■□□□□ 0.18
VPS52-218ENST00000482399 L1TD1Q5T7N2 865 aaKnown RBP16.15■□□□□ 0.18
VPS52-218ENST00000482399 RSPH4AQ5TD94 716 aa16.15■□□□□ 0.18
VPS52-218ENST00000482399 PMFBP1Q8TBY8 1022 aa16.15■□□□□ 0.18
VPS52-218ENST00000482399 TMEM132EQ6IEE7 984 aa16.15■□□□□ 0.18
VPS52-218ENST00000482399 WWC1Q8IX03 1113 aa16.14■□□□□ 0.17
VPS52-218ENST00000482399 TSR2Q969E8 191 aaKnown RBP16.14■□□□□ 0.17
VPS52-218ENST00000482399 RAPGEF6Q8TEU7 1601 aa16.14■□□□□ 0.17
VPS52-218ENST00000482399 STK26Q9P289 416 aa16.14■□□□□ 0.17
VPS52-218ENST00000482399 MAGI1Q96QZ7 1491 aaPredicted RBP16.14■□□□□ 0.17
VPS52-218ENST00000482399 PNNQ9H307 717 aaKnown RBP16.14■□□□□ 0.17
VPS52-218ENST00000482399 EFCAB2Q5VUJ9 269 aa16.13■□□□□ 0.17
VPS52-218ENST00000482399 HSCBQ8IWL3 235 aa16.13■□□□□ 0.17
VPS52-218ENST00000482399 TRIM44Q96DX7 344 aaPredicted RBP16.13■□□□□ 0.17
VPS52-218ENST00000482399 SPAG9O60271 1321 aaKnown RBP16.13■□□□□ 0.17
VPS52-218ENST00000482399 GRIN2AQ12879 1464 aa16.13■□□□□ 0.17
VPS52-218ENST00000482399 PLEKHH2Q8IVE3 1493 aa16.13■□□□□ 0.17
VPS52-218ENST00000482399 HSP90AB1P08238 724 aaKnown RBP16.12■□□□□ 0.17
VPS52-218ENST00000482399 NCLP19338 710 aaKnown RBP16.12■□□□□ 0.17
VPS52-218ENST00000482399 PCDHB15Q9Y5E8 787 aa16.12■□□□□ 0.17
VPS52-218ENST00000482399 MTHFSP49914 203 aa16.12■□□□□ 0.17
VPS52-218ENST00000482399 RLBP1P12271 317 aa16.11■□□□□ 0.17
VPS52-218ENST00000482399 GGT6Q6P531 493 aa16.11■□□□□ 0.17
VPS52-218ENST00000482399 TBC1D2Q9BYX2 928 aa16.11■□□□□ 0.17
VPS52-218ENST00000482399 ELL2O00472 640 aaPredicted RBP16.1■□□□□ 0.17
VPS52-218ENST00000482399 KIAA0556O60303 1618 aa16.1■□□□□ 0.17
VPS52-218ENST00000482399 MRC2Q9UBG0 1479 aa16.1■□□□□ 0.17
VPS52-218ENST00000482399 PANK2Q9BZ23 570 aa16.09■□□□□ 0.17
VPS52-218ENST00000482399 PDE3AQ14432 1141 aa16.09■□□□□ 0.17
VPS52-218ENST00000482399 RSPH6AQ9H0K4 717 aa16.09■□□□□ 0.17
VPS52-218ENST00000482399 TPRNQ4KMQ1 711 aa16.09■□□□□ 0.17
VPS52-218ENST00000482399 C22orf23Q9BZE7 217 aa16.09■□□□□ 0.17
VPS52-218ENST00000482399 LNPKQ9C0E8 428 aa16.09■□□□□ 0.17
VPS52-218ENST00000482399 ADAMTS12P58397 1594 aa16.08■□□□□ 0.17
VPS52-218ENST00000482399 ATP10BO94823 1461 aa16.08■□□□□ 0.16
VPS52-218ENST00000482399 APBB1O00213 710 aa16.08■□□□□ 0.16
VPS52-218ENST00000482399 ARHGAP5Q13017 1502 aa16.08■□□□□ 0.16
VPS52-218ENST00000482399 A2MP01023 1474 aa16.07■□□□□ 0.16
VPS52-218ENST00000482399 FAM43AQ8N2R8 423 aa16.07■□□□□ 0.16
VPS52-218ENST00000482399 NKTRP30414 1462 aaKnown RBP16.07■□□□□ 0.16
VPS52-218ENST00000482399 KIF21AQ7Z4S6 1674 aa16.07■□□□□ 0.16
VPS52-218ENST00000482399 FAM135AQ9P2D6 1515 aa16.07■□□□□ 0.16
VPS52-218ENST00000482399 RARSP54136 660 aaKnown RBP16.07■□□□□ 0.16
VPS52-218ENST00000482399 ZBTB7CA1YPR0 619 aa16.06■□□□□ 0.16
VPS52-218ENST00000482399 SRPK2P78362 688 aaKnown RBP16.06■□□□□ 0.16
VPS52-218ENST00000482399 RUNDC1Q96C34 613 aa16.06■□□□□ 0.16
VPS52-218ENST00000482399 BLMP54132 1417 aaPredicted RBP16.06■□□□□ 0.16
VPS52-218ENST00000482399 COL17A1Q9UMD9 1497 aaPredicted RBP16.06■□□□□ 0.16
VPS52-218ENST00000482399 ZKSCAN2Q63HK3 967 aa16.06■□□□□ 0.16
VPS52-218ENST00000482399 CARD14Q9BXL6 1004 aa16.06■□□□□ 0.16
VPS52-218ENST00000482399 MYH16Q9H6N6 1097 aa16.06■□□□□ 0.16
VPS52-218ENST00000482399 DZIP1LQ8IYY4 767 aaKnown RBP16.06■□□□□ 0.16
VPS52-218ENST00000482399 CCDC141Q6ZP82 1450 aa16.05■□□□□ 0.16
VPS52-218ENST00000482399 TRAK2O60296 914 aa16.05■□□□□ 0.16
VPS52-218ENST00000482399 EIF3AQ14152 1382 aaKnown RBP16.05■□□□□ 0.16
VPS52-218ENST00000482399 IFT140Q96RY7 1462 aa16.05■□□□□ 0.16
VPS52-218ENST00000482399 ARHGEF12Q9NZN5 1544 aa16.04■□□□□ 0.16
VPS52-218ENST00000482399 ARID3AQ99856 593 aa16.04■□□□□ 0.16
VPS52-218ENST00000482399 ADGRL2O95490 1459 aa16.04■□□□□ 0.16
VPS52-218ENST00000482399 RRAGDQ9NQL2 400 aaPredicted RBP16.04■□□□□ 0.16
VPS52-218ENST00000482399 MAGI2Q86UL8 1455 aa16.03■□□□□ 0.16
VPS52-218ENST00000482399 EXOSC9Q06265 439 aaKnown RBP16.03■□□□□ 0.16
VPS52-218ENST00000482399 ADGRF5Q8IZF2 1346 aa16.03■□□□□ 0.16
VPS52-218ENST00000482399 TARBP1Q13395 1621 aaKnown RBP16.03■□□□□ 0.16
VPS52-218ENST00000482399 MCM4P33991 863 aa16.02■□□□□ 0.16
VPS52-218ENST00000482399 ANP32BQ92688 251 aaKnown RBP16.02■□□□□ 0.16
VPS52-218ENST00000482399 GGNBP2Q9H3C7 697 aa16.02■□□□□ 0.16
VPS52-218ENST00000482399 ZMYM4Q5VZL5 1548 aa16.02■□□□□ 0.16
VPS52-218ENST00000482399 SYNJ2O15056 1496 aa16.02■□□□□ 0.15
VPS52-218ENST00000482399 C1orf115Q9H7X2 142 aa16.01■□□□□ 0.15
VPS52-218ENST00000482399 CHMP5Q9NZZ3 219 aa16.01■□□□□ 0.15
VPS52-218ENST00000482399 CABP2Q9NPB3 220 aa16.01■□□□□ 0.15
VPS52-218ENST00000482399 ANKRD45Q5TZF3 282 aa16■□□□□ 0.15
VPS52-218ENST00000482399 XRCC6P12956 609 aaKnown RBP eCLIP16■□□□□ 0.15
VPS52-218ENST00000482399 GLIPR1L2Q4G1C9 344 aa16■□□□□ 0.15
VPS52-218ENST00000482399 KANK1Q14678 1352 aa16■□□□□ 0.15
VPS52-218ENST00000482399 ZNF521Q96K83 1311 aa16■□□□□ 0.15
VPS52-218ENST00000482399 SLC24A1O60721 1099 aa15.99■□□□□ 0.15
VPS52-218ENST00000482399 TBC1D32Q96NH3 1257 aa15.99■□□□□ 0.15
VPS52-218ENST00000482399 PBRM1Q86U86 1689 aa15.99■□□□□ 0.15
VPS52-218ENST00000482399 VSIG10Q8N0Z9 540 aa15.99■□□□□ 0.15
VPS52-218ENST00000482399 USP19O94966 1318 aa15.98■□□□□ 0.15
VPS52-218ENST00000482399 FOXD4L5Q5VV16 416 aaPredicted RBP15.97■□□□□ 0.15
VPS52-218ENST00000482399 FOXD4L4Q8WXT5 416 aaPredicted RBP15.97■□□□□ 0.15
VPS52-218ENST00000482399 ITSN2Q9NZM3 1697 aa15.97■□□□□ 0.15
VPS52-218ENST00000482399 MVPQ14764 893 aaKnown RBP15.97■□□□□ 0.15
VPS52-218ENST00000482399 NOB1Q9ULX3 412 aaKnown RBP15.97■□□□□ 0.15
VPS52-218ENST00000482399 PLA2R1Q13018 1463 aa15.97■□□□□ 0.15
VPS52-218ENST00000482399 SYCP2Q9BX26 1530 aa15.96■□□□□ 0.15
VPS52-218ENST00000482399 RIPK4P57078 832 aa15.96■□□□□ 0.14
VPS52-218ENST00000482399 NSD3Q9BZ95 1437 aa15.95■□□□□ 0.14
VPS52-218ENST00000482399 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.95■□□□□ 0.14
VPS52-218ENST00000482399 SSH1Q8WYL5 1049 aa15.94■□□□□ 0.14
VPS52-218ENST00000482399 STAG3Q9UJ98 1225 aa15.94■□□□□ 0.14
VPS52-218ENST00000482399 GPRASP1Q5JY77 1395 aa15.94■□□□□ 0.14
VPS52-218ENST00000482399 GOLGA6L22H0YM25 854 aa15.94■□□□□ 0.14
VPS52-218ENST00000482399 HSP90AA2PQ14568 343 aaPredicted RBP15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms