RNA–Protein interactions for RNA: ENST00000477739.1

CMC1-209, Transcript of C-X9-C motif containing 1, humanhuman

TSL 1 (best)

Gene CMC1, Length 3,749 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMC1-209ENST00000477739 ERBINQ96RT1 1412 aa12.66□□□□□ -0.38
CMC1-209ENST00000477739 NFKBIBQ15653 356 aa12.66□□□□□ -0.38
CMC1-209ENST00000477739 TRAK1Q9UPV9 953 aa12.66□□□□□ -0.38
CMC1-209ENST00000477739 CHD1O14646 1710 aa12.65□□□□□ -0.38
CMC1-209ENST00000477739 A2MP01023 1474 aa12.65□□□□□ -0.38
CMC1-209ENST00000477739 SLC24A1O60721 1099 aa12.65□□□□□ -0.38
CMC1-209ENST00000477739 GOLGA2Q08379 1002 aa12.65□□□□□ -0.38
CMC1-209ENST00000477739 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.65□□□□□ -0.38
CMC1-209ENST00000477739 CFAP70Q5T0N1 1121 aa12.64□□□□□ -0.39
CMC1-209ENST00000477739 PLA2R1Q13018 1463 aa12.64□□□□□ -0.39
CMC1-209ENST00000477739 PREX2Q70Z35 1606 aa12.64□□□□□ -0.39
CMC1-209ENST00000477739 PER1O15534 1290 aaPredicted RBP12.63□□□□□ -0.39
CMC1-209ENST00000477739 KDM5DQ9BY66 1539 aa12.63□□□□□ -0.39
CMC1-209ENST00000477739 DUOX2Q9NRD8 1548 aa12.63□□□□□ -0.39
CMC1-209ENST00000477739 CDC42BPBQ9Y5S2 1711 aa12.62□□□□□ -0.39
CMC1-209ENST00000477739 PRKCSHP14314 528 aaPredicted RBP12.62□□□□□ -0.39
CMC1-209ENST00000477739 PDE3BQ13370 1112 aa12.62□□□□□ -0.39
CMC1-209ENST00000477739 TMEM132EQ6IEE7 984 aa12.62□□□□□ -0.39
CMC1-209ENST00000477739 ZBTB7CA1YPR0 619 aa12.61□□□□□ -0.39
CMC1-209ENST00000477739 TNNQ9UQP3 1299 aa12.61□□□□□ -0.39
CMC1-209ENST00000477739 DDRGK1Q96HY6 314 aa12.61□□□□□ -0.39
CMC1-209ENST00000477739 SPINK5Q9NQ38 1064 aaPredicted RBP12.61□□□□□ -0.39
CMC1-209ENST00000477739 ELL2O00472 640 aaPredicted RBP12.6□□□□□ -0.39
CMC1-209ENST00000477739 SOX12O15370 315 aa12.6□□□□□ -0.39
CMC1-209ENST00000477739 APBB1O00213 710 aa12.59□□□□□ -0.39
CMC1-209ENST00000477739 WASHC2CQ9Y4E1 1318 aa12.59□□□□□ -0.39
CMC1-209ENST00000477739 PARD3Q8TEW0 1356 aa12.59□□□□□ -0.39
CMC1-209ENST00000477739 HSP90AA1P07900 732 aaKnown RBP12.59□□□□□ -0.39
CMC1-209ENST00000477739 PPP2R1AP30153 589 aa12.59□□□□□ -0.39
CMC1-209ENST00000477739 MFAP1P55081 439 aaKnown RBP12.59□□□□□ -0.39
CMC1-209ENST00000477739 U2AF1L5P0DN76 240 aaPredicted RBP12.58□□□□□ -0.4
CMC1-209ENST00000477739 U2AF1Q01081 240 aaKnown RBP eCLIP12.58□□□□□ -0.44e-11■■■■■ 37.5
CMC1-209ENST00000477739 MORC1Q86VD1 984 aa12.58□□□□□ -0.4
CMC1-209ENST00000477739 DMRT2Q9Y5R5 561 aa12.58□□□□□ -0.4
CMC1-209ENST00000477739 EIF3AQ14152 1382 aaKnown RBP12.58□□□□□ -0.4
CMC1-209ENST00000477739 GSE1Q14687 1217 aa12.58□□□□□ -0.4
CMC1-209ENST00000477739 FTSJ3Q8IY81 847 aaKnown RBP12.58□□□□□ -0.4
CMC1-209ENST00000477739 FANCAO15360 1455 aa12.58□□□□□ -0.4
CMC1-209ENST00000477739 LRPPRCP42704 1394 aaKnown RBP12.57□□□□□ -0.4
CMC1-209ENST00000477739 UPF2Q9HAU5 1272 aaKnown RBP12.57□□□□□ -0.4
CMC1-209ENST00000477739 MYO5CQ9NQX4 1742 aa12.57□□□□□ -0.4
CMC1-209ENST00000477739 GPRASP1Q5JY77 1395 aa12.57□□□□□ -0.4
CMC1-209ENST00000477739 ADGRF5Q8IZF2 1346 aa12.56□□□□□ -0.4
CMC1-209ENST00000477739 OSCARQ8IYS5 282 aa12.56□□□□□ -0.4
CMC1-209ENST00000477739 ADGRL1O94910 1474 aa12.56□□□□□ -0.4
CMC1-209ENST00000477739 FAM161AQ3B820 660 aa12.55□□□□□ -0.4
CMC1-209ENST00000477739 COL17A1Q9UMD9 1497 aaPredicted RBP12.55□□□□□ -0.4
CMC1-209ENST00000477739 SEC24BO95487 1268 aa12.54□□□□□ -0.4
CMC1-209ENST00000477739 STAC3Q96MF2 364 aa12.54□□□□□ -0.4
CMC1-209ENST00000477739 IGHDP01880 384 aa12.54□□□□□ -0.4
CMC1-209ENST00000477739 SLC12A5Q9H2X9 1139 aa12.54□□□□□ -0.4
CMC1-209ENST00000477739 TSR2Q969E8 191 aaKnown RBP12.53□□□□□ -0.4
CMC1-209ENST00000477739 ARID3AQ99856 593 aa12.53□□□□□ -0.4
CMC1-209ENST00000477739 POGKQ9P215 609 aa12.53□□□□□ -0.4
CMC1-209ENST00000477739 MAST1Q9Y2H9 1570 aa12.52□□□□□ -0.4
CMC1-209ENST00000477739 WDR7Q9Y4E6 1490 aa12.52□□□□□ -0.4
CMC1-209ENST00000477739 STAG3Q9UJ98 1225 aa12.52□□□□□ -0.4
CMC1-209ENST00000477739 CENPJQ9HC77 1338 aaPredicted RBP12.52□□□□□ -0.4
CMC1-209ENST00000477739 FBLN1P23142 703 aa12.52□□□□□ -0.41
CMC1-209ENST00000477739 ITPRIPQ8IWB1 547 aa12.52□□□□□ -0.41
CMC1-209ENST00000477739 ZCCHC11Q5TAX3 1644 aaKnown RBP12.52□□□□□ -0.41
CMC1-209ENST00000477739 POLR1AO95602 1720 aaPredicted RBP12.52□□□□□ -0.41
CMC1-209ENST00000477739 RAPGEF3O95398 923 aa12.52□□□□□ -0.41
CMC1-209ENST00000477739 AMER1Q5JTC6 1135 aaPredicted RBP12.51□□□□□ -0.41
CMC1-209ENST00000477739 CENPQQ7L2Z9 268 aaPredicted RBP12.51□□□□□ -0.41
CMC1-209ENST00000477739 RNF123Q5XPI4 1314 aa12.51□□□□□ -0.41
CMC1-209ENST00000477739 MLECQ14165 292 aa12.51□□□□□ -0.41
CMC1-209ENST00000477739 NUTM2FA1L443 756 aa12.51□□□□□ -0.41
CMC1-209ENST00000477739 SCAF11Q99590 1463 aaKnown RBP12.51□□□□□ -0.41
CMC1-209ENST00000477739 ABCC1P33527 1531 aa12.51□□□□□ -0.41
CMC1-209ENST00000477739 PLEKHH1Q9ULM0 1364 aa12.51□□□□□ -0.41
CMC1-209ENST00000477739 ASXL2Q76L83 1435 aa12.5□□□□□ -0.41
CMC1-209ENST00000477739 SRPK2P78362 688 aaKnown RBP12.5□□□□□ -0.41
CMC1-209ENST00000477739 DUSP27Q5VZP5 1158 aa12.5□□□□□ -0.41
CMC1-209ENST00000477739 UNC13BO14795 1591 aa12.5□□□□□ -0.41
CMC1-209ENST00000477739 TRPM1Q7Z4N2 1603 aa12.5□□□□□ -0.41
CMC1-209ENST00000477739 RTEL1-TNFRSF6BF6WH68 1400 aa12.5□□□□□ -0.41
CMC1-209ENST00000477739 NAP1L5Q96NT1 182 aaPredicted RBP12.49□□□□□ -0.41
CMC1-209ENST00000477739 ATP10AO60312 1499 aa12.49□□□□□ -0.41
CMC1-209ENST00000477739 PLXNC1O60486 1568 aa12.49□□□□□ -0.41
CMC1-209ENST00000477739 NCLP19338 710 aaKnown RBP12.48□□□□□ -0.41
CMC1-209ENST00000477739 UHRF1BP1LA0JNW5 1464 aa12.48□□□□□ -0.41
CMC1-209ENST00000477739 IQGAP3Q86VI3 1631 aa12.48□□□□□ -0.41
CMC1-209ENST00000477739 EIF2AK4Q9P2K8 1649 aaKnown RBP12.48□□□□□ -0.41
CMC1-209ENST00000477739 SHROOM2Q13796 1616 aa12.48□□□□□ -0.41
CMC1-209ENST00000477739 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.48□□□□□ -0.417e-7■■□□□ 12.2
CMC1-209ENST00000477739 SMC4Q9NTJ3 1288 aa12.48□□□□□ -0.41
CMC1-209ENST00000477739 BECN1Q14457 450 aa12.47□□□□□ -0.41
CMC1-209ENST00000477739 MS4A1P11836 297 aa12.47□□□□□ -0.41
CMC1-209ENST00000477739 GGNBP2Q9H3C7 697 aa12.47□□□□□ -0.41
CMC1-209ENST00000477739 C1orf115Q9H7X2 142 aa12.47□□□□□ -0.41
CMC1-209ENST00000477739 PRDM15P57071 1507 aaPredicted RBP12.46□□□□□ -0.41
CMC1-209ENST00000477739 MTHFSP49914 203 aa12.46□□□□□ -0.41
CMC1-209ENST00000477739 FOXD4L5Q5VV16 416 aaPredicted RBP12.46□□□□□ -0.41
CMC1-209ENST00000477739 TCP11L2Q8N4U5 519 aa12.46□□□□□ -0.41
CMC1-209ENST00000477739 FOXD4L4Q8WXT5 416 aaPredicted RBP12.46□□□□□ -0.41
CMC1-209ENST00000477739 CABP2Q9NPB3 220 aa12.46□□□□□ -0.41
CMC1-209ENST00000477739 MAGI2Q86UL8 1455 aa12.46□□□□□ -0.41
CMC1-209ENST00000477739 CD109Q6YHK3 1445 aa12.46□□□□□ -0.42
CMC1-209ENST00000477739 ATP7AQ04656 1500 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms