RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-222ENST00000473373 SLIT1O75093 1534 aa17.3■□□□□ 0.36
CPNE1-222ENST00000473373 PPP1R15AO75807 674 aaPredicted RBP17.28■□□□□ 0.36
CPNE1-222ENST00000473373 NAIPQ13075 1403 aa17.28■□□□□ 0.36
CPNE1-222ENST00000473373 TMEM2Q9UHN6 1383 aa17.28■□□□□ 0.36
CPNE1-222ENST00000473373 LRRC7Q96NW7 1537 aa17.27■□□□□ 0.36
CPNE1-222ENST00000473373 ARHGAP23Q9P227 1491 aa17.26■□□□□ 0.35
CPNE1-222ENST00000473373 STRCP1A6NGW2 1772 aa17.26■□□□□ 0.35
CPNE1-222ENST00000473373 KIF1BO60333 1816 aa17.26■□□□□ 0.35
CPNE1-222ENST00000473373 HFM1A2PYH4 1435 aa17.25■□□□□ 0.35
CPNE1-222ENST00000473373 LTKP29376 864 aa17.25■□□□□ 0.35
CPNE1-222ENST00000473373 HDGFP51858 240 aaKnown RBP17.25■□□□□ 0.35
CPNE1-222ENST00000473373 TMEM131LA2VDJ0 1609 aa17.25■□□□□ 0.35
CPNE1-222ENST00000473373 ZNF326Q5BKZ1 582 aaKnown RBP17.21■□□□□ 0.35
CPNE1-222ENST00000473373 RIMS2Q9UQ26 1411 aa17.21■□□□□ 0.34
CPNE1-222ENST00000473373 SLC4A1APQ9BWU0 796 aaKnown RBP17.2■□□□□ 0.34
CPNE1-222ENST00000473373 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.19■□□□□ 0.34
CPNE1-222ENST00000473373 NUTM2DQ5VT03 806 aaPredicted RBP17.18■□□□□ 0.34
CPNE1-222ENST00000473373 SLC26A8Q96RN1 970 aa17.18■□□□□ 0.34
CPNE1-222ENST00000473373 RGS17Q9UGC6 210 aaPredicted RBP17.17■□□□□ 0.34
CPNE1-222ENST00000473373 CLTCL1P53675 1640 aa17.16■□□□□ 0.34
CPNE1-222ENST00000473373 TRPM2O94759 1503 aa17.15■□□□□ 0.34
CPNE1-222ENST00000473373 PLEKHG1Q9ULL1 1385 aa17.13■□□□□ 0.33
CPNE1-222ENST00000473373 ZFYVE9O95405 1425 aa17.13■□□□□ 0.33
CPNE1-222ENST00000473373 CHD2O14647 1828 aaKnown RBP17.12■□□□□ 0.33
CPNE1-222ENST00000473373 XIRP1Q702N8 1843 aaKnown RBP17.12■□□□□ 0.33
CPNE1-222ENST00000473373 RBM33Q96EV2 1170 aaKnown RBP17.12■□□□□ 0.33
CPNE1-222ENST00000473373 PROSER2Q86WR7 435 aaPredicted RBP17.1■□□□□ 0.33
CPNE1-222ENST00000473373 SETD5Q9C0A6 1442 aa17.1■□□□□ 0.33
CPNE1-222ENST00000473373 TMEM94Q12767 1356 aa17.09■□□□□ 0.33
CPNE1-222ENST00000473373 DIP2AQ14689 1571 aa17.09■□□□□ 0.33
CPNE1-222ENST00000473373 ACIN1Q9UKV3 1341 aaKnown RBP17.08■□□□□ 0.32
CPNE1-222ENST00000473373 KCNA6P17658 529 aa17.08■□□□□ 0.32
CPNE1-222ENST00000473373 FOXD1Q16676 465 aa17.08■□□□□ 0.32
CPNE1-222ENST00000473373 FAM135BQ49AJ0 1406 aa17.07■□□□□ 0.32
CPNE1-222ENST00000473373 POTEAQ6S8J7 498 aa17.07■□□□□ 0.32
CPNE1-222ENST00000473373 C14orf37Q86TY3 774 aa17.07■□□□□ 0.32
CPNE1-222ENST00000473373 MPHOSPH9Q99550 1183 aa17.06■□□□□ 0.32
CPNE1-222ENST00000473373 NWD1Q149M9 1564 aa17.06■□□□□ 0.32
CPNE1-222ENST00000473373 NKTRP30414 1462 aaKnown RBP17.05■□□□□ 0.32
CPNE1-222ENST00000473373 CCDC144AA2RUR9 1427 aa17.04■□□□□ 0.32
CPNE1-222ENST00000473373 RAB3GAP2Q9H2M9 1393 aa17.03■□□□□ 0.32
CPNE1-222ENST00000473373 PPLO60437 1756 aa17.03■□□□□ 0.32
CPNE1-222ENST00000473373 NEXMIFQ5QGS0 1516 aa17.03■□□□□ 0.32
CPNE1-222ENST00000473373 TBX22Q9Y458 520 aa17.03■□□□□ 0.32
CPNE1-222ENST00000473373 MSH6P52701 1360 aa17.02■□□□□ 0.31
CPNE1-222ENST00000473373 ROBO1Q9Y6N7 1651 aa17■□□□□ 0.31
CPNE1-222ENST00000473373 NRXN3Q9Y4C0 1643 aa16.99■□□□□ 0.31
CPNE1-222ENST00000473373 SETBP1Q9Y6X0 1596 aa16.99■□□□□ 0.31
CPNE1-222ENST00000473373 ADAMTS13Q76LX8 1427 aa16.99■□□□□ 0.31
CPNE1-222ENST00000473373 VGFO15240 615 aaPredicted RBP16.99■□□□□ 0.31
CPNE1-222ENST00000473373 RGL3Q3MIN7 710 aa16.99■□□□□ 0.31
CPNE1-222ENST00000473373 SLAIN2Q9P270 581 aa16.98■□□□□ 0.31
CPNE1-222ENST00000473373 PIK3R4Q99570 1358 aa16.98■□□□□ 0.31
CPNE1-222ENST00000473373 AMOTL2Q9Y2J4 779 aa16.97■□□□□ 0.31
CPNE1-222ENST00000473373 RPGRIP1LQ68CZ1 1315 aa16.96■□□□□ 0.3
CPNE1-222ENST00000473373 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.94■□□□□ 0.3
CPNE1-222ENST00000473373 IFT172Q9UG01 1749 aa16.94■□□□□ 0.3
CPNE1-222ENST00000473373 XRN1Q8IZH2 1706 aaKnown RBP16.93■□□□□ 0.3
CPNE1-222ENST00000473373 ATF3P18847 181 aa16.92■□□□□ 0.3
CPNE1-222ENST00000473373 JCADQ9P266 1359 aa16.9■□□□□ 0.3
CPNE1-222ENST00000473373 PHLPP1O60346 1717 aa16.9■□□□□ 0.3
CPNE1-222ENST00000473373 PTPRUQ92729 1446 aa16.9■□□□□ 0.3
CPNE1-222ENST00000473373 SETD1AO15047 1707 aaKnown RBP16.9■□□□□ 0.3
CPNE1-222ENST00000473373 METP08581 1390 aa16.89■□□□□ 0.3
CPNE1-222ENST00000473373 NCOA3Q9Y6Q9 1424 aa16.88■□□□□ 0.29
CPNE1-222ENST00000473373 CADPS2Q86UW7 1296 aa16.88■□□□□ 0.29
CPNE1-222ENST00000473373 ANKRD30BQ9BXX2 1392 aa16.88■□□□□ 0.29
CPNE1-222ENST00000473373 C19orf44Q9H6X5 657 aa16.87■□□□□ 0.29
CPNE1-222ENST00000473373 MEX3CQ5U5Q3 659 aaKnown RBP16.86■□□□□ 0.29
CPNE1-222ENST00000473373 NALCNQ8IZF0 1738 aa16.86■□□□□ 0.29
CPNE1-222ENST00000473373 SPATA31E1Q6ZUB1 1445 aa16.85■□□□□ 0.29
CPNE1-222ENST00000473373 ADGRF5Q8IZF2 1346 aa16.84■□□□□ 0.29
CPNE1-222ENST00000473373 LAMC1P11047 1609 aa16.83■□□□□ 0.28
CPNE1-222ENST00000473373 HRCP23327 699 aa16.83■□□□□ 0.28
CPNE1-222ENST00000473373 STK26Q9P289 416 aa16.83■□□□□ 0.28
CPNE1-222ENST00000473373 LRP6O75581 1613 aa16.82■□□□□ 0.28
CPNE1-222ENST00000473373 COL16A1Q07092 1604 aaPredicted RBP16.82■□□□□ 0.28
CPNE1-222ENST00000473373 SPATA31A6Q5VVP1 1343 aa16.82■□□□□ 0.28
CPNE1-222ENST00000473373 ZNF772Q68DY9 489 aaPredicted RBP16.81■□□□□ 0.28
CPNE1-222ENST00000473373 NUTM2BA6NNL0 878 aaPredicted RBP16.8■□□□□ 0.28
CPNE1-222ENST00000473373 NUTM2EB1AL46 878 aaPredicted RBP16.8■□□□□ 0.28
CPNE1-222ENST00000473373 NUTM2AQ8IVF1 878 aaPredicted RBP16.8■□□□□ 0.28
CPNE1-222ENST00000473373 KDM2AQ9Y2K7 1162 aa16.8■□□□□ 0.28
CPNE1-222ENST00000473373 DCCP43146 1447 aa16.79■□□□□ 0.28
CPNE1-222ENST00000473373 PTCH1Q13635 1447 aa16.79■□□□□ 0.28
CPNE1-222ENST00000473373 ADGRL3Q9HAR2 1447 aa16.79■□□□□ 0.28
CPNE1-222ENST00000473373 KNDC1Q76NI1 1749 aa16.79■□□□□ 0.28
CPNE1-222ENST00000473373 UPF1Q92900 1129 aaKnown RBP eCLIP16.79■□□□□ 0.28
CPNE1-222ENST00000473373 PIK3C2GO75747 1445 aa16.78■□□□□ 0.28
CPNE1-222ENST00000473373 TMEM132EQ6IEE7 984 aa16.77■□□□□ 0.28
CPNE1-222ENST00000473373 BRINP3Q76B58 766 aa16.77■□□□□ 0.28
CPNE1-222ENST00000473373 DCAF11Q8TEB1 546 aa16.77■□□□□ 0.28
CPNE1-222ENST00000473373 MYOM2P54296 1465 aa16.77■□□□□ 0.28
CPNE1-222ENST00000473373 ROBO2Q9HCK4 1378 aa16.77■□□□□ 0.27
CPNE1-222ENST00000473373 RXRBP28702 533 aa16.75■□□□□ 0.27
CPNE1-222ENST00000473373 DHX57Q6P158 1386 aaKnown RBP16.74■□□□□ 0.27
CPNE1-222ENST00000473373 AHDC1Q5TGY3 1603 aaPredicted RBP16.74■□□□□ 0.27
CPNE1-222ENST00000473373 MST1RQ04912 1400 aa16.73■□□□□ 0.27
CPNE1-222ENST00000473373 CFAP70Q5T0N1 1121 aa16.73■□□□□ 0.27
CPNE1-222ENST00000473373 ASXL1Q8IXJ9 1541 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms