RNA–Protein interactions for RNA: ENST00000462730.5

HDAC6-213, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 1,999 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-213ENST00000462730 PPLO60437 1756 aa20.13■□□□□ 0.81
HDAC6-213ENST00000462730 CHGAP10645 457 aaKnown RBP20.12■□□□□ 0.81
HDAC6-213ENST00000462730 NBPF1Q3BBV0 1214 aa20.12■□□□□ 0.81
HDAC6-213ENST00000462730 ARID4BQ4LE39 1312 aaPredicted RBP20.11■□□□□ 0.81
HDAC6-213ENST00000462730 CCER2I3L3R5 266 aa20.11■□□□□ 0.81
HDAC6-213ENST00000462730 SPATA31D1Q6ZQQ2 1576 aa20.1■□□□□ 0.81
HDAC6-213ENST00000462730 KIAA1210Q9ULL0 1709 aa20.1■□□□□ 0.81
HDAC6-213ENST00000462730 FBXO31Q5XUX0 539 aaPredicted RBP20.09■□□□□ 0.81
HDAC6-213ENST00000462730 ST20-MTHFSA0A0A6YYL1 179 aa20.08■□□□□ 0.81
HDAC6-213ENST00000462730 SLC52A1Q9NWF4 448 aa20.08■□□□□ 0.81
HDAC6-213ENST00000462730 NRXN1Q9ULB1 1477 aa20.08■□□□□ 0.81
HDAC6-213ENST00000462730 MYO5BQ9ULV0 1848 aa20.07■□□□□ 0.8
HDAC6-213ENST00000462730 IDI1Q13907 227 aa20.07■□□□□ 0.8
HDAC6-213ENST00000462730 TMEM131LA2VDJ0 1609 aa20.07■□□□□ 0.8
HDAC6-213ENST00000462730 ESF1Q9H501 851 aaKnown RBP20.06■□□□□ 0.8
HDAC6-213ENST00000462730 NEXMIFQ5QGS0 1516 aa20.06■□□□□ 0.8
HDAC6-213ENST00000462730 IQGAP1P46940 1657 aa20.06■□□□□ 0.8
HDAC6-213ENST00000462730 ADGRF5Q8IZF2 1346 aa20.06■□□□□ 0.8
HDAC6-213ENST00000462730 POLR3GLQ9BT43 218 aa20.06■□□□□ 0.8
HDAC6-213ENST00000462730 ZMYM3Q14202 1370 aa20.04■□□□□ 0.8
HDAC6-213ENST00000462730 RPGRIP1LQ68CZ1 1315 aa20.03■□□□□ 0.8
HDAC6-213ENST00000462730 PIK3C2GO75747 1445 aa20.03■□□□□ 0.8
HDAC6-213ENST00000462730 FER1L4A9Z1Z3 1794 aa20■□□□□ 0.79
HDAC6-213ENST00000462730 SCAF11Q99590 1463 aaKnown RBP19.99■□□□□ 0.79
HDAC6-213ENST00000462730 CFAP70Q5T0N1 1121 aa19.98■□□□□ 0.79
HDAC6-213ENST00000462730 SETBP1Q9Y6X0 1596 aa19.97■□□□□ 0.79
HDAC6-213ENST00000462730 NUTM2DQ5VT03 806 aaPredicted RBP19.95■□□□□ 0.78
HDAC6-213ENST00000462730 PRKRIP1Q9H875 184 aaPredicted RBP19.95■□□□□ 0.78
HDAC6-213ENST00000462730 C3P01024 1663 aa19.94■□□□□ 0.78
HDAC6-213ENST00000462730 ZFYVE9O95405 1425 aa19.94■□□□□ 0.78
HDAC6-213ENST00000462730 A2ML1A8K2U0 1454 aa19.94■□□□□ 0.78
HDAC6-213ENST00000462730 VGFO15240 615 aaPredicted RBP19.94■□□□□ 0.78
HDAC6-213ENST00000462730 TESK2Q96S53 571 aa19.93■□□□□ 0.78
HDAC6-213ENST00000462730 STAG3Q9UJ98 1225 aa19.93■□□□□ 0.78
HDAC6-213ENST00000462730 ADGRB1O14514 1584 aa19.93■□□□□ 0.78
HDAC6-213ENST00000462730 EIF3AQ14152 1382 aaKnown RBP19.92■□□□□ 0.78
HDAC6-213ENST00000462730 TNRQ92752 1358 aa19.92■□□□□ 0.78
HDAC6-213ENST00000462730 DISP3Q9P2K9 1392 aa19.91■□□□□ 0.78
HDAC6-213ENST00000462730 C14orf93Q9H972 538 aaKnown RBP19.9■□□□□ 0.78
HDAC6-213ENST00000462730 KDM5AP29375 1690 aaKnown RBP19.89■□□□□ 0.77
HDAC6-213ENST00000462730 MYO3AQ8NEV4 1616 aa19.89■□□□□ 0.77
HDAC6-213ENST00000462730 TMF1P82094 1093 aa19.88■□□□□ 0.77
HDAC6-213ENST00000462730 UBR1Q8IWV7 1749 aa19.87■□□□□ 0.77
HDAC6-213ENST00000462730 RIMS2Q9UQ26 1411 aa19.86■□□□□ 0.77
HDAC6-213ENST00000462730 CEBPAP49715 358 aaPredicted RBP19.86■□□□□ 0.77
HDAC6-213ENST00000462730 ASXL1Q8IXJ9 1541 aa19.85■□□□□ 0.77
HDAC6-213ENST00000462730 CCDC184Q52MB2 194 aa19.84■□□□□ 0.77
HDAC6-213ENST00000462730 NLRP1Q9C000 1473 aa19.84■□□□□ 0.77
HDAC6-213ENST00000462730 RIMS1Q86UR5 1692 aaKnown RBP19.83■□□□□ 0.77
HDAC6-213ENST00000462730 TMEM132EQ6IEE7 984 aa19.83■□□□□ 0.77
HDAC6-213ENST00000462730 CNGB1Q14028 1251 aaPredicted RBP19.83■□□□□ 0.76
HDAC6-213ENST00000462730 ARHGEF28Q8N1W1 1705 aaKnown RBP19.82■□□□□ 0.76
HDAC6-213ENST00000462730 SENP3Q9H4L4 574 aaPredicted RBP19.81■□□□□ 0.76
HDAC6-213ENST00000462730 ALKQ9UM73 1620 aa19.81■□□□□ 0.76
HDAC6-213ENST00000462730 QRICH2Q9H0J4 1663 aa19.81■□□□□ 0.76
HDAC6-213ENST00000462730 MRS2Q9HD23 443 aa19.81■□□□□ 0.76
HDAC6-213ENST00000462730 PLPPR3Q6T4P5 718 aa19.8■□□□□ 0.76
HDAC6-213ENST00000462730 TRAK1Q9UPV9 953 aa19.8■□□□□ 0.76
HDAC6-213ENST00000462730 ADAMTSL3P82987 1691 aa19.79■□□□□ 0.76
HDAC6-213ENST00000462730 SETD1AO15047 1707 aaKnown RBP19.79■□□□□ 0.76
HDAC6-213ENST00000462730 NRXN3Q9Y4C0 1643 aa19.78■□□□□ 0.76
HDAC6-213ENST00000462730 SBNO2Q9Y2G9 1366 aa19.78■□□□□ 0.76
HDAC6-213ENST00000462730 CENPJQ9HC77 1338 aaPredicted RBP19.77■□□□□ 0.76
HDAC6-213ENST00000462730 TMEM2Q9UHN6 1383 aa19.77■□□□□ 0.75
HDAC6-213ENST00000462730 PTPRMP28827 1452 aa19.75■□□□□ 0.75
HDAC6-213ENST00000462730 MYOM1P52179 1685 aa19.75■□□□□ 0.75
HDAC6-213ENST00000462730 CDCA8Q53HL2 280 aa19.75■□□□□ 0.75
HDAC6-213ENST00000462730 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.75■□□□□ 0.75
HDAC6-213ENST00000462730 KTN1Q86UP2 1357 aaKnown RBP19.74■□□□□ 0.75
HDAC6-213ENST00000462730 PANK3Q9H999 370 aa19.74■□□□□ 0.75
HDAC6-213ENST00000462730 YTHDC2Q9H6S0 1430 aaKnown RBP19.73■□□□□ 0.75
HDAC6-213ENST00000462730 SLC24A1O60721 1099 aa19.72■□□□□ 0.75
HDAC6-213ENST00000462730 HNRNPUQ00839 825 aaKnown RBP eCLIP19.72■□□□□ 0.75
HDAC6-213ENST00000462730 RALBP1Q15311 655 aa19.72■□□□□ 0.75
HDAC6-213ENST00000462730 FAM9BQ8IZU0 186 aa19.72■□□□□ 0.75
HDAC6-213ENST00000462730 SUPT16HQ9Y5B9 1047 aaKnown RBP19.72■□□□□ 0.75
HDAC6-213ENST00000462730 PER1O15534 1290 aaPredicted RBP19.72■□□□□ 0.75
HDAC6-213ENST00000462730 HDGFP51858 240 aaKnown RBP19.7■□□□□ 0.74
HDAC6-213ENST00000462730 SLIT1O75093 1534 aa19.7■□□□□ 0.74
HDAC6-213ENST00000462730 MYBBP1AQ9BQG0 1328 aaKnown RBP19.69■□□□□ 0.74
HDAC6-213ENST00000462730 CEP170BQ9Y4F5 1589 aaPredicted RBP19.69■□□□□ 0.74
HDAC6-213ENST00000462730 STK26Q9P289 416 aa19.69■□□□□ 0.74
HDAC6-213ENST00000462730 PARD3Q8TEW0 1356 aa19.68■□□□□ 0.74
HDAC6-213ENST00000462730 ARHGAP23Q9P227 1491 aa19.68■□□□□ 0.74
HDAC6-213ENST00000462730 TULP4Q9NRJ4 1543 aa19.67■□□□□ 0.74
HDAC6-213ENST00000462730 DLC1Q96QB1 1528 aa19.65■□□□□ 0.74
HDAC6-213ENST00000462730 ZNF142P52746 1687 aaPredicted RBP19.65■□□□□ 0.74
HDAC6-213ENST00000462730 BRD4O60885 1362 aaPredicted RBP19.65■□□□□ 0.74
HDAC6-213ENST00000462730 PLEKHG1Q9ULL1 1385 aa19.65■□□□□ 0.74
HDAC6-213ENST00000462730 LTKP29376 864 aa19.64■□□□□ 0.74
HDAC6-213ENST00000462730 METP08581 1390 aa19.64■□□□□ 0.73
HDAC6-213ENST00000462730 LRPPRCP42704 1394 aaKnown RBP19.64■□□□□ 0.73
HDAC6-213ENST00000462730 CC2D1BQ5T0F9 858 aaKnown RBP19.64■□□□□ 0.73
HDAC6-213ENST00000462730 TMC1Q8TDI8 760 aa19.64■□□□□ 0.73
HDAC6-213ENST00000462730 ADAMTS13Q76LX8 1427 aa19.63■□□□□ 0.73
HDAC6-213ENST00000462730 SAFB2Q14151 953 aaKnown RBP eCLIP19.63■□□□□ 0.73
HDAC6-213ENST00000462730 KNDC1Q76NI1 1749 aa19.63■□□□□ 0.73
HDAC6-213ENST00000462730 PRAM1Q96QH2 718 aa19.63■□□□□ 0.73
HDAC6-213ENST00000462730 TXNDC2Q86VQ3 553 aa19.62■□□□□ 0.73
HDAC6-213ENST00000462730 BCANQ96GW7 911 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms