RNA–Protein interactions for RNA: ENST00000462613.1

SF3B1-206, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 3

Gene SF3B1, Length 141 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-206ENST00000462613 BCANQ96GW7 911 aa9.28□□□□□ -0.92
SF3B1-206ENST00000462613 ARHGAP23Q9P227 1491 aa9.28□□□□□ -0.92
SF3B1-206ENST00000462613 RIMS2Q9UQ26 1411 aa9.27□□□□□ -0.93
SF3B1-206ENST00000462613 IFT172Q9UG01 1749 aa9.27□□□□□ -0.93
SF3B1-206ENST00000462613 RPGRIP1LQ68CZ1 1315 aa9.27□□□□□ -0.93
SF3B1-206ENST00000462613 ANKRD30BQ9BXX2 1392 aa9.26□□□□□ -0.93
SF3B1-206ENST00000462613 DHX57Q6P158 1386 aaKnown RBP9.25□□□□□ -0.93
SF3B1-206ENST00000462613 NPHP4O75161 1426 aaPredicted RBP9.25□□□□□ -0.93
SF3B1-206ENST00000462613 VGFO15240 615 aaPredicted RBP9.25□□□□□ -0.93
SF3B1-206ENST00000462613 RGL3Q3MIN7 710 aa9.25□□□□□ -0.93
SF3B1-206ENST00000462613 MED14O60244 1454 aa9.25□□□□□ -0.93
SF3B1-206ENST00000462613 NCKAP5LQ9HCH0 1330 aa9.25□□□□□ -0.93
SF3B1-206ENST00000462613 NEXMIFQ5QGS0 1516 aa9.24□□□□□ -0.93
SF3B1-206ENST00000462613 DIP2AQ14689 1571 aa9.24□□□□□ -0.93
SF3B1-206ENST00000462613 ZFYVE9O95405 1425 aa9.23□□□□□ -0.93
SF3B1-206ENST00000462613 STAC3Q96MF2 364 aa9.23□□□□□ -0.93
SF3B1-206ENST00000462613 PLEKHG1Q9ULL1 1385 aa9.23□□□□□ -0.93
SF3B1-206ENST00000462613 SPATA31E1Q6ZUB1 1445 aa9.22□□□□□ -0.93
SF3B1-206ENST00000462613 LTKP29376 864 aa9.22□□□□□ -0.93
SF3B1-206ENST00000462613 LAMC1P11047 1609 aa9.22□□□□□ -0.93
SF3B1-206ENST00000462613 CLSPNQ9HAW4 1339 aa9.22□□□□□ -0.93
SF3B1-206ENST00000462613 CCER1Q8TC90 406 aaPredicted RBP9.21□□□□□ -0.94
SF3B1-206ENST00000462613 SETBP1Q9Y6X0 1596 aa9.2□□□□□ -0.94
SF3B1-206ENST00000462613 CHD2O14647 1828 aaKnown RBP9.2□□□□□ -0.94
SF3B1-206ENST00000462613 NEUROD1Q13562 356 aa9.2□□□□□ -0.94
SF3B1-206ENST00000462613 NUTM2DQ5VT03 806 aaPredicted RBP9.2□□□□□ -0.94
SF3B1-206ENST00000462613 TONSLQ96HA7 1378 aa9.2□□□□□ -0.94
SF3B1-206ENST00000462613 MYOM2P54296 1465 aa9.2□□□□□ -0.94
SF3B1-206ENST00000462613 CPS1P31327 1500 aa9.18□□□□□ -0.94
SF3B1-206ENST00000462613 DCAF11Q8TEB1 546 aa9.18□□□□□ -0.94
SF3B1-206ENST00000462613 NRXN3Q9Y4C0 1643 aa9.17□□□□□ -0.94
SF3B1-206ENST00000462613 PIK3R4Q99570 1358 aa9.17□□□□□ -0.94
SF3B1-206ENST00000462613 SLC26A8Q96RN1 970 aa9.17□□□□□ -0.94
SF3B1-206ENST00000462613 SENP3Q9H4L4 574 aaPredicted RBP9.17□□□□□ -0.94
SF3B1-206ENST00000462613 KDM2AQ9Y2K7 1162 aa9.17□□□□□ -0.94
SF3B1-206ENST00000462613 TBX22Q9Y458 520 aa9.17□□□□□ -0.94
SF3B1-206ENST00000462613 KIAA1210Q9ULL0 1709 aa9.17□□□□□ -0.94
SF3B1-206ENST00000462613 ALKQ9UM73 1620 aa9.16□□□□□ -0.94
SF3B1-206ENST00000462613 SIN3AQ96ST3 1273 aa9.16□□□□□ -0.94
SF3B1-206ENST00000462613 SETD1AO15047 1707 aaKnown RBP9.16□□□□□ -0.94
SF3B1-206ENST00000462613 NKTRP30414 1462 aaKnown RBP9.15□□□□□ -0.94
SF3B1-206ENST00000462613 PIK3C2GO75747 1445 aa9.15□□□□□ -0.94
SF3B1-206ENST00000462613 NWD1Q149M9 1564 aa9.15□□□□□ -0.95
SF3B1-206ENST00000462613 ADAMTS13Q76LX8 1427 aa9.14□□□□□ -0.95
SF3B1-206ENST00000462613 STRCP1A6NGW2 1772 aa9.14□□□□□ -0.95
SF3B1-206ENST00000462613 ADGRF5Q8IZF2 1346 aa9.14□□□□□ -0.95
SF3B1-206ENST00000462613 ZNF335Q9H4Z2 1342 aaPredicted RBP9.14□□□□□ -0.95
SF3B1-206ENST00000462613 KCNA6P17658 529 aa9.14□□□□□ -0.95
SF3B1-206ENST00000462613 TIMELESSQ9UNS1 1208 aa9.14□□□□□ -0.95
SF3B1-206ENST00000462613 KNDC1Q76NI1 1749 aa9.14□□□□□ -0.95
SF3B1-206ENST00000462613 XRN1Q8IZH2 1706 aaKnown RBP9.13□□□□□ -0.95
SF3B1-206ENST00000462613 NRXN1Q9ULB1 1477 aa9.13□□□□□ -0.95
SF3B1-206ENST00000462613 C14orf37Q86TY3 774 aa9.12□□□□□ -0.95
SF3B1-206ENST00000462613 L3MBTL2Q969R5 705 aa9.12□□□□□ -0.95
SF3B1-206ENST00000462613 IQSEC2Q5JU85 1478 aa9.12□□□□□ -0.95
SF3B1-206ENST00000462613 LTBP4Q8N2S1 1624 aa9.12□□□□□ -0.95
SF3B1-206ENST00000462613 PROSER2Q86WR7 435 aaPredicted RBP9.11□□□□□ -0.95
SF3B1-206ENST00000462613 C14orf93Q9H972 538 aaKnown RBP9.11□□□□□ -0.95
SF3B1-206ENST00000462613 AMOTL2Q9Y2J4 779 aa9.11□□□□□ -0.95
SF3B1-206ENST00000462613 TRPM1Q7Z4N2 1603 aa9.11□□□□□ -0.95
SF3B1-206ENST00000462613 XIRP1Q702N8 1843 aaKnown RBP9.1□□□□□ -0.95
SF3B1-206ENST00000462613 CERKQ8TCT0 537 aa9.1□□□□□ -0.95
SF3B1-206ENST00000462613 PRAG1Q86YV5 1406 aa9.1□□□□□ -0.95
SF3B1-206ENST00000462613 METP08581 1390 aa9.1□□□□□ -0.95
SF3B1-206ENST00000462613 CFAP70Q5T0N1 1121 aa9.09□□□□□ -0.95
SF3B1-206ENST00000462613 MSH6P52701 1360 aa9.09□□□□□ -0.95
SF3B1-206ENST00000462613 PTCH1Q13635 1447 aa9.08□□□□□ -0.96
SF3B1-206ENST00000462613 YTHDC2Q9H6S0 1430 aaKnown RBP9.08□□□□□ -0.96
SF3B1-206ENST00000462613 NCOA3Q9Y6Q9 1424 aa9.08□□□□□ -0.96
SF3B1-206ENST00000462613 STK26Q9P289 416 aa9.08□□□□□ -0.96
SF3B1-206ENST00000462613 LRRC7Q96NW7 1537 aa9.08□□□□□ -0.96
SF3B1-206ENST00000462613 ROCK2O75116 1388 aaKnown RBP9.08□□□□□ -0.96
SF3B1-206ENST00000462613 LRPPRCP42704 1394 aaKnown RBP9.08□□□□□ -0.96
SF3B1-206ENST00000462613 ARHGEF28Q8N1W1 1705 aaKnown RBP9.08□□□□□ -0.96
SF3B1-206ENST00000462613 TMEM132EQ6IEE7 984 aa9.07□□□□□ -0.96
SF3B1-206ENST00000462613 EIF3AQ14152 1382 aaKnown RBP9.07□□□□□ -0.96
SF3B1-206ENST00000462613 ABCC11Q96J66 1382 aa9.07□□□□□ -0.96
SF3B1-206ENST00000462613 TECPR2O15040 1411 aa9.06□□□□□ -0.96
SF3B1-206ENST00000462613 PTPRUQ92729 1446 aa9.06□□□□□ -0.96
SF3B1-206ENST00000462613 ASXL1Q8IXJ9 1541 aa9.06□□□□□ -0.96
SF3B1-206ENST00000462613 DLC1Q96QB1 1528 aa9.06□□□□□ -0.96
SF3B1-206ENST00000462613 NALCNQ8IZF0 1738 aa9.06□□□□□ -0.96
SF3B1-206ENST00000462613 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.06□□□□□ -0.96
SF3B1-206ENST00000462613 TOM1O60784 492 aa9.06□□□□□ -0.96
SF3B1-206ENST00000462613 POGKQ9P215 609 aa9.06□□□□□ -0.96
SF3B1-206ENST00000462613 TMEM94Q12767 1356 aa9.06□□□□□ -0.96
SF3B1-206ENST00000462613 ADGRB1O14514 1584 aa9.06□□□□□ -0.96
SF3B1-206ENST00000462613 FAM135BQ49AJ0 1406 aa9.05□□□□□ -0.96
SF3B1-206ENST00000462613 ATF3P18847 181 aa9.05□□□□□ -0.96
SF3B1-206ENST00000462613 QRICH2Q9H0J4 1663 aa9.04□□□□□ -0.96
SF3B1-206ENST00000462613 RALGAPBQ86X10 1494 aa9.04□□□□□ -0.96
SF3B1-206ENST00000462613 CADPS2Q86UW7 1296 aa9.04□□□□□ -0.96
SF3B1-206ENST00000462613 SIRT1Q96EB6 747 aa9.04□□□□□ -0.96
SF3B1-206ENST00000462613 C19orf44Q9H6X5 657 aa9.04□□□□□ -0.96
SF3B1-206ENST00000462613 TRAK1Q9UPV9 953 aa9.04□□□□□ -0.96
SF3B1-206ENST00000462613 DCCP43146 1447 aa9.04□□□□□ -0.96
SF3B1-206ENST00000462613 ADGRL3Q9HAR2 1447 aa9.04□□□□□ -0.96
SF3B1-206ENST00000462613 UBAP1LF5GYI3 381 aa9.03□□□□□ -0.96
SF3B1-206ENST00000462613 CARD11Q9BXL7 1154 aa9.03□□□□□ -0.96
SF3B1-206ENST00000462613 SCAF1Q9H7N4 1312 aaKnown RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms