RNA–Protein interactions for RNA: ENST00000461195.5

TRAF4-207, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 787 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-207ENST00000461195 HDGFP51858 240 aaKnown RBP33.65■■■□□ 2.98
TRAF4-207ENST00000461195 SLC4A1APQ9BWU0 796 aaKnown RBP33.65■■■□□ 2.98
TRAF4-207ENST00000461195 TRPM2O94759 1503 aa33.63■■■□□ 2.97
TRAF4-207ENST00000461195 STRCP1A6NGW2 1772 aa33.62■■■□□ 2.97
TRAF4-207ENST00000461195 PPP1R15AO75807 674 aaPredicted RBP33.59■■■□□ 2.97
TRAF4-207ENST00000461195 ABCF1Q8NE71 845 aaKnown RBP eCLIP33.59■■■□□ 2.97
TRAF4-207ENST00000461195 SETD5Q9C0A6 1442 aa33.59■■■□□ 2.97
TRAF4-207ENST00000461195 CLTCL1P53675 1640 aa33.58■■■□□ 2.97
TRAF4-207ENST00000461195 SCAF1Q9H7N4 1312 aaKnown RBP33.56■■■□□ 2.96
TRAF4-207ENST00000461195 ACIN1Q9UKV3 1341 aaKnown RBP33.56■■■□□ 2.96
TRAF4-207ENST00000461195 BCANQ96GW7 911 aa33.56■■■□□ 2.96
TRAF4-207ENST00000461195 PLEKHG1Q9ULL1 1385 aa33.56■■■□□ 2.96
TRAF4-207ENST00000461195 SLC26A8Q96RN1 970 aa33.54■■■□□ 2.96
TRAF4-207ENST00000461195 PIP4K2BP78356 416 aa33.53■■■□□ 2.96
TRAF4-207ENST00000461195 KIF1BO60333 1816 aa33.52■■■□□ 2.96
TRAF4-207ENST00000461195 TOM1O60784 492 aa33.51■■■□□ 2.95
TRAF4-207ENST00000461195 LRRC7Q96NW7 1537 aa33.5■■■□□ 2.95
TRAF4-207ENST00000461195 NUTM2DQ5VT03 806 aaPredicted RBP33.49■■■□□ 2.95
TRAF4-207ENST00000461195 MPHOSPH9Q99550 1183 aa33.49■■■□□ 2.95
TRAF4-207ENST00000461195 HSPA1LP34931 641 aa33.48■■■□□ 2.95
TRAF4-207ENST00000461195 SENP3Q9H4L4 574 aaPredicted RBP33.48■■■□□ 2.95
TRAF4-207ENST00000461195 ZNF326Q5BKZ1 582 aaKnown RBP33.47■■■□□ 2.95
TRAF4-207ENST00000461195 RAB3GAP2Q9H2M9 1393 aa33.47■■■□□ 2.95
TRAF4-207ENST00000461195 FOXD1Q16676 465 aa33.45■■■□□ 2.95
TRAF4-207ENST00000461195 KCNA6P17658 529 aa33.44■■■□□ 2.94
TRAF4-207ENST00000461195 TBX22Q9Y458 520 aa33.41■■■□□ 2.94
TRAF4-207ENST00000461195 DIP2AQ14689 1571 aa33.4■■■□□ 2.94
TRAF4-207ENST00000461195 NWD1Q149M9 1564 aa33.4■■■□□ 2.94
TRAF4-207ENST00000461195 ADAMTS13Q76LX8 1427 aa33.39■■■□□ 2.94
TRAF4-207ENST00000461195 NEXMIFQ5QGS0 1516 aa33.38■■■□□ 2.93
TRAF4-207ENST00000461195 CHD2O14647 1828 aaKnown RBP33.37■■■□□ 2.93
TRAF4-207ENST00000461195 XIRP1Q702N8 1843 aaKnown RBP33.37■■■□□ 2.93
TRAF4-207ENST00000461195 NKTRP30414 1462 aaKnown RBP33.35■■■□□ 2.93
TRAF4-207ENST00000461195 CCDC144AA2RUR9 1427 aa33.35■■■□□ 2.93
TRAF4-207ENST00000461195 SETBP1Q9Y6X0 1596 aa33.33■■■□□ 2.93
TRAF4-207ENST00000461195 MED1Q15648 1581 aaPredicted RBP33.31■■■□□ 2.92
TRAF4-207ENST00000461195 PROSER2Q86WR7 435 aaPredicted RBP33.31■■■□□ 2.92
TRAF4-207ENST00000461195 NRXN3Q9Y4C0 1643 aa33.31■■■□□ 2.92
TRAF4-207ENST00000461195 ALKQ9UM73 1620 aa33.3■■■□□ 2.92
TRAF4-207ENST00000461195 PIK3R4Q99570 1358 aa33.3■■■□□ 2.92
TRAF4-207ENST00000461195 HRCP23327 699 aa33.29■■■□□ 2.92
TRAF4-207ENST00000461195 TMEM94Q12767 1356 aa33.29■■■□□ 2.92
TRAF4-207ENST00000461195 RPGRIP1LQ68CZ1 1315 aa33.28■■■□□ 2.92
TRAF4-207ENST00000461195 PPLO60437 1756 aa33.25■■■□□ 2.91
TRAF4-207ENST00000461195 VGFO15240 615 aaPredicted RBP33.25■■■□□ 2.91
TRAF4-207ENST00000461195 RBM33Q96EV2 1170 aaKnown RBP33.21■■■□□ 2.91
TRAF4-207ENST00000461195 SPATA31E1Q6ZUB1 1445 aa33.2■■■□□ 2.91
TRAF4-207ENST00000461195 PTPRUQ92729 1446 aa33.18■■■□□ 2.9
TRAF4-207ENST00000461195 RGL3Q3MIN7 710 aa33.17■■■□□ 2.9
TRAF4-207ENST00000461195 AMOTL2Q9Y2J4 779 aa33.17■■■□□ 2.9
TRAF4-207ENST00000461195 METP08581 1390 aa33.15■■■□□ 2.9
TRAF4-207ENST00000461195 MSH6P52701 1360 aa33.14■■■□□ 2.9
TRAF4-207ENST00000461195 XRN1Q8IZH2 1706 aaKnown RBP33.14■■■□□ 2.89
TRAF4-207ENST00000461195 NCOA3Q9Y6Q9 1424 aa33.13■■■□□ 2.89
TRAF4-207ENST00000461195 PHF23Q9BUL5 403 aaPredicted RBP33.13■■■□□ 2.89
TRAF4-207ENST00000461195 IFT172Q9UG01 1749 aa33.13■■■□□ 2.89
TRAF4-207ENST00000461195 ANKRD30BQ9BXX2 1392 aa33.1■■■□□ 2.89
TRAF4-207ENST00000461195 SETD1AO15047 1707 aaKnown RBP33.1■■■□□ 2.89
TRAF4-207ENST00000461195 C14orf37Q86TY3 774 aa33.06■■■□□ 2.88
TRAF4-207ENST00000461195 ADGRF5Q8IZF2 1346 aa33.05■■■□□ 2.88
TRAF4-207ENST00000461195 FAM135BQ49AJ0 1406 aa33.01■■■□□ 2.87
TRAF4-207ENST00000461195 SIPA1L2Q9P2F8 1722 aaPredicted RBP33■■■□□ 2.87
TRAF4-207ENST00000461195 C19orf44Q9H6X5 657 aa33■■■□□ 2.87
TRAF4-207ENST00000461195 SLAIN2Q9P270 581 aa32.97■■■□□ 2.87
TRAF4-207ENST00000461195 ROBO1Q9Y6N7 1651 aa32.97■■■□□ 2.87
TRAF4-207ENST00000461195 PIK3C2GO75747 1445 aa32.95■■■□□ 2.87
TRAF4-207ENST00000461195 CADPS2Q86UW7 1296 aa32.95■■■□□ 2.87
TRAF4-207ENST00000461195 ATF3P18847 181 aa32.94■■■□□ 2.86
TRAF4-207ENST00000461195 PTCH1Q13635 1447 aa32.94■■■□□ 2.86
TRAF4-207ENST00000461195 MYOM2P54296 1465 aa32.93■■■□□ 2.86
TRAF4-207ENST00000461195 PRAG1Q86YV5 1406 aa32.93■■■□□ 2.86
TRAF4-207ENST00000461195 DCCP43146 1447 aa32.91■■■□□ 2.86
TRAF4-207ENST00000461195 NRXN1Q9ULB1 1477 aa32.9■■■□□ 2.86
TRAF4-207ENST00000461195 ROBO2Q9HCK4 1378 aa32.88■■■□□ 2.85
TRAF4-207ENST00000461195 ADGRL3Q9HAR2 1447 aa32.87■■■□□ 2.85
TRAF4-207ENST00000461195 NALCNQ8IZF0 1738 aa32.87■■■□□ 2.85
TRAF4-207ENST00000461195 LAMC1P11047 1609 aa32.84■■■□□ 2.85
TRAF4-207ENST00000461195 ASXL1Q8IXJ9 1541 aa32.84■■■□□ 2.85
TRAF4-207ENST00000461195 C14orf93Q9H972 538 aaKnown RBP32.83■■■□□ 2.85
TRAF4-207ENST00000461195 TMEM132EQ6IEE7 984 aa32.82■■■□□ 2.84
TRAF4-207ENST00000461195 RGS17Q9UGC6 210 aaPredicted RBP32.82■■■□□ 2.84
TRAF4-207ENST00000461195 LRPPRCP42704 1394 aaKnown RBP32.82■■■□□ 2.84
TRAF4-207ENST00000461195 DCAF11Q8TEB1 546 aa32.8■■■□□ 2.84
TRAF4-207ENST00000461195 STK26Q9P289 416 aa32.8■■■□□ 2.84
TRAF4-207ENST00000461195 KNDC1Q76NI1 1749 aa32.8■■■□□ 2.84
TRAF4-207ENST00000461195 TECPR2O15040 1411 aa32.79■■■□□ 2.84
TRAF4-207ENST00000461195 TRIM26Q12899 539 aaPredicted RBP32.79■■■□□ 2.84
TRAF4-207ENST00000461195 STAC3Q96MF2 364 aa32.79■■■□□ 2.84
TRAF4-207ENST00000461195 CFAP70Q5T0N1 1121 aa32.78■■■□□ 2.84
TRAF4-207ENST00000461195 KDM2AQ9Y2K7 1162 aa32.78■■■□□ 2.84
TRAF4-207ENST00000461195 ABCC11Q96J66 1382 aa32.78■■■□□ 2.84
TRAF4-207ENST00000461195 PHLPP1O60346 1717 aa32.77■■■□□ 2.84
TRAF4-207ENST00000461195 MST1RQ04912 1400 aa32.77■■■□□ 2.84
TRAF4-207ENST00000461195 YTHDC2Q9H6S0 1430 aaKnown RBP32.77■■■□□ 2.84
TRAF4-207ENST00000461195 DHX57Q6P158 1386 aaKnown RBP32.75■■■□□ 2.83
TRAF4-207ENST00000461195 BRINP3Q76B58 766 aa32.71■■■□□ 2.83
TRAF4-207ENST00000461195 AHDC1Q5TGY3 1603 aaPredicted RBP32.69■■■□□ 2.82
TRAF4-207ENST00000461195 WAPLQ7Z5K2 1190 aa32.69■■■□□ 2.82
TRAF4-207ENST00000461195 COL16A1Q07092 1604 aaPredicted RBP32.67■■■□□ 2.82
TRAF4-207ENST00000461195 SIRT1Q96EB6 747 aa32.67■■■□□ 2.82
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms