RNA–Protein interactions for RNA: ENST00000459727.5

HDAC3-202, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 524 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-202ENST00000459727 CCDC136Q96JN2 1154 aa11.78□□□□□ -0.52
HDAC3-202ENST00000459727 CLTCL1P53675 1640 aa11.78□□□□□ -0.52
HDAC3-202ENST00000459727 EFCAB6Q5THR3 1501 aa11.77□□□□□ -0.52
HDAC3-202ENST00000459727 NBPF1Q3BBV0 1214 aa11.77□□□□□ -0.53
HDAC3-202ENST00000459727 ILDR1Q86SU0 546 aaPredicted RBP11.77□□□□□ -0.53
HDAC3-202ENST00000459727 NGEFQ8N5V2 710 aa11.77□□□□□ -0.53
HDAC3-202ENST00000459727 PIK3C2GO75747 1445 aa11.77□□□□□ -0.53
HDAC3-202ENST00000459727 KNSTRNQ9Y448 316 aa11.76□□□□□ -0.53
HDAC3-202ENST00000459727 SBNO2Q9Y2G9 1366 aa11.76□□□□□ -0.53
HDAC3-202ENST00000459727 ASXL1Q8IXJ9 1541 aa11.76□□□□□ -0.53
HDAC3-202ENST00000459727 RRP1P56182 461 aaKnown RBP11.75□□□□□ -0.53
HDAC3-202ENST00000459727 PANK3Q9H999 370 aa11.75□□□□□ -0.53
HDAC3-202ENST00000459727 RCAN3Q9UKA8 241 aa11.75□□□□□ -0.53
HDAC3-202ENST00000459727 MAP3K4Q9Y6R4 1608 aa11.75□□□□□ -0.53
HDAC3-202ENST00000459727 B4GALNT3Q6L9W6 998 aa11.74□□□□□ -0.53
HDAC3-202ENST00000459727 SETBP1Q9Y6X0 1596 aa11.74□□□□□ -0.53
HDAC3-202ENST00000459727 KDM5AP29375 1690 aaKnown RBP11.74□□□□□ -0.53
HDAC3-202ENST00000459727 ASXL2Q76L83 1435 aa11.73□□□□□ -0.53
HDAC3-202ENST00000459727 MROH1Q8NDA8 1641 aa11.73□□□□□ -0.53
HDAC3-202ENST00000459727 MYO3AQ8NEV4 1616 aa11.72□□□□□ -0.53
HDAC3-202ENST00000459727 NRXN1Q9ULB1 1477 aa11.72□□□□□ -0.53
HDAC3-202ENST00000459727 KIF1BO60333 1816 aa11.72□□□□□ -0.53
HDAC3-202ENST00000459727 MLH3Q9UHC1 1453 aa11.71□□□□□ -0.53
HDAC3-202ENST00000459727 NPM1P06748 294 aaKnown RBP eCLIP11.71□□□□□ -0.53
HDAC3-202ENST00000459727 WDR43Q15061 677 aaKnown RBP eCLIP11.71□□□□□ -0.53
HDAC3-202ENST00000459727 AFAP1Q8N556 730 aa11.71□□□□□ -0.53
HDAC3-202ENST00000459727 ADGRB3O60242 1522 aa11.7□□□□□ -0.54
HDAC3-202ENST00000459727 IFT172Q9UG01 1749 aa11.7□□□□□ -0.54
HDAC3-202ENST00000459727 RPGRIP1LQ68CZ1 1315 aa11.69□□□□□ -0.54
HDAC3-202ENST00000459727 TCERG1O14776 1098 aaKnown RBP11.69□□□□□ -0.54
HDAC3-202ENST00000459727 KIF3BO15066 747 aa11.69□□□□□ -0.54
HDAC3-202ENST00000459727 MS4A1P11836 297 aa11.69□□□□□ -0.54
HDAC3-202ENST00000459727 ANP32AP39687 249 aaKnown RBP11.69□□□□□ -0.54
HDAC3-202ENST00000459727 CNGB1Q14028 1251 aaPredicted RBP11.69□□□□□ -0.54
HDAC3-202ENST00000459727 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.69□□□□□ -0.54
HDAC3-202ENST00000459727 HECW2Q9P2P5 1572 aa11.69□□□□□ -0.54
HDAC3-202ENST00000459727 POGZQ7Z3K3 1410 aa11.69□□□□□ -0.54
HDAC3-202ENST00000459727 KIF13AQ9H1H9 1805 aa11.68□□□□□ -0.54
HDAC3-202ENST00000459727 CC2D1BQ5T0F9 858 aaKnown RBP11.68□□□□□ -0.54
HDAC3-202ENST00000459727 KIDINS220Q9ULH0 1771 aa11.68□□□□□ -0.54
HDAC3-202ENST00000459727 NEO1Q92859 1461 aa11.68□□□□□ -0.54
HDAC3-202ENST00000459727 ABCA6Q8N139 1617 aa11.68□□□□□ -0.54
HDAC3-202ENST00000459727 AMER1Q5JTC6 1135 aaPredicted RBP11.67□□□□□ -0.54
HDAC3-202ENST00000459727 MYOM1P52179 1685 aa11.67□□□□□ -0.54
HDAC3-202ENST00000459727 PPRC1Q5VV67 1664 aaKnown RBP11.67□□□□□ -0.54
HDAC3-202ENST00000459727 PPP2R1AP30153 589 aa11.66□□□□□ -0.54
HDAC3-202ENST00000459727 PUS7Q96PZ0 661 aaKnown RBP11.66□□□□□ -0.54
HDAC3-202ENST00000459727 KDM4FA0A1W2PPD8 638 aa11.65□□□□□ -0.54
HDAC3-202ENST00000459727 ZC3H13Q5T200 1668 aaKnown RBP11.65□□□□□ -0.55
HDAC3-202ENST00000459727 CD109Q6YHK3 1445 aa11.64□□□□□ -0.55
HDAC3-202ENST00000459727 NINLQ9Y2I6 1382 aa11.64□□□□□ -0.55
HDAC3-202ENST00000459727 USP32Q8NFA0 1604 aa11.64□□□□□ -0.55
HDAC3-202ENST00000459727 ERVK-7P63135 1459 aa11.63□□□□□ -0.55
HDAC3-202ENST00000459727 GOLGA2Q08379 1002 aa11.62□□□□□ -0.55
HDAC3-202ENST00000459727 ARHGAP31Q2M1Z3 1444 aa11.61□□□□□ -0.55
HDAC3-202ENST00000459727 NOP58Q9Y2X3 529 aaKnown RBP11.61□□□□□ -0.55
HDAC3-202ENST00000459727 NSD2O96028 1365 aa11.61□□□□□ -0.55
HDAC3-202ENST00000459727 CENPJQ9HC77 1338 aaPredicted RBP11.6□□□□□ -0.55
HDAC3-202ENST00000459727 ABCC3O15438 1527 aa11.6□□□□□ -0.55
HDAC3-202ENST00000459727 POLR3AO14802 1390 aaPredicted RBP11.6□□□□□ -0.55
HDAC3-202ENST00000459727 MSH5O43196 834 aa11.6□□□□□ -0.55
HDAC3-202ENST00000459727 NCBP3Q53F19 620 aaKnown RBP11.6□□□□□ -0.55
HDAC3-202ENST00000459727 NPATQ14207 1427 aa11.6□□□□□ -0.55
HDAC3-202ENST00000459727 ZNF521Q96K83 1311 aa11.6□□□□□ -0.55
HDAC3-202ENST00000459727 PPLO60437 1756 aa11.59□□□□□ -0.55
HDAC3-202ENST00000459727 MROH2AA6NES4 1674 aa11.59□□□□□ -0.55
HDAC3-202ENST00000459727 ADAMTS8Q9UP79 889 aa11.59□□□□□ -0.55
HDAC3-202ENST00000459727 ZFYVE9O95405 1425 aa11.59□□□□□ -0.55
HDAC3-202ENST00000459727 NOS1P29475 1434 aa11.59□□□□□ -0.55
HDAC3-202ENST00000459727 FRMPD1Q5SYB0 1578 aa11.58□□□□□ -0.55
HDAC3-202ENST00000459727 CAMSAP1Q5T5Y3 1602 aa11.58□□□□□ -0.56
HDAC3-202ENST00000459727 E9PSI1 815 aa11.58□□□□□ -0.56
HDAC3-202ENST00000459727 AAMPQ13685 434 aa11.58□□□□□ -0.56
HDAC3-202ENST00000459727 EXOC6Q8TAG9 804 aa11.58□□□□□ -0.56
HDAC3-202ENST00000459727 IPO9Q96P70 1041 aaKnown RBP11.58□□□□□ -0.56
HDAC3-202ENST00000459727 C14orf93Q9H972 538 aaKnown RBP11.58□□□□□ -0.56
HDAC3-202ENST00000459727 NKTRP30414 1462 aaKnown RBP11.57□□□□□ -0.56
HDAC3-202ENST00000459727 PIK3C2BO00750 1634 aa11.57□□□□□ -0.56
HDAC3-202ENST00000459727 CFAP70Q5T0N1 1121 aa11.57□□□□□ -0.56
HDAC3-202ENST00000459727 CENPQQ7L2Z9 268 aaPredicted RBP11.57□□□□□ -0.56
HDAC3-202ENST00000459727 ADGRB1O14514 1584 aa11.57□□□□□ -0.56
HDAC3-202ENST00000459727 UGGT1Q9NYU2 1555 aa11.57□□□□□ -0.56
HDAC3-202ENST00000459727 ADGRF5Q8IZF2 1346 aa11.57□□□□□ -0.56
HDAC3-202ENST00000459727 VGFO15240 615 aaPredicted RBP11.56□□□□□ -0.56
HDAC3-202ENST00000459727 DUSP27Q5VZP5 1158 aa11.56□□□□□ -0.56
HDAC3-202ENST00000459727 QRICH2Q9H0J4 1663 aa11.55□□□□□ -0.56
HDAC3-202ENST00000459727 DDRGK1Q96HY6 314 aa11.55□□□□□ -0.56
HDAC3-202ENST00000459727 CFAP53Q96M91 514 aa11.55□□□□□ -0.56
HDAC3-202ENST00000459727 ZBTB47Q9UFB7 747 aaPredicted RBP11.55□□□□□ -0.56
HDAC3-202ENST00000459727 CGNL1Q0VF96 1302 aa11.55□□□□□ -0.56
HDAC3-202ENST00000459727 PLEKHH1Q9ULM0 1364 aa11.54□□□□□ -0.56
HDAC3-202ENST00000459727 SLFN5Q08AF3 891 aa11.54□□□□□ -0.56
HDAC3-202ENST00000459727 CDCA7LQ96GN5 454 aa11.54□□□□□ -0.56
HDAC3-202ENST00000459727 SALL2Q9Y467 1007 aaPredicted RBP11.54□□□□□ -0.56
HDAC3-202ENST00000459727 EVC2Q86UK5 1308 aa11.54□□□□□ -0.56
HDAC3-202ENST00000459727 DIP2CQ9Y2E4 1556 aa11.54□□□□□ -0.56
HDAC3-202ENST00000459727 TRMT2AQ8IZ69 625 aaKnown RBP11.53□□□□□ -0.56
HDAC3-202ENST00000459727 SLC52A1Q9NWF4 448 aa11.53□□□□□ -0.56
HDAC3-202ENST00000459727 GLI2P10070 1586 aa11.53□□□□□ -0.56
HDAC3-202ENST00000459727 CRBNQ96SW2 442 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms