RNA–Protein interactions for RNA: ENST00000457461.1

CUBNP3-201, Transcript of cubilin pseudogene 3, humanhuman

BASIC

Gene CUBNP3, Length 1,784 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUBNP3-201ENST00000457461 RAPGEF3O95398 923 aa9.25□□□□□ -0.93
CUBNP3-201ENST00000457461 EFCAB6Q5THR3 1501 aa9.25□□□□□ -0.93
CUBNP3-201ENST00000457461 ARHGEF40Q8TER5 1519 aa9.25□□□□□ -0.93
CUBNP3-201ENST00000457461 ZC3H13Q5T200 1668 aaKnown RBP9.25□□□□□ -0.93
CUBNP3-201ENST00000457461 ATXN8OSP0DMR3 200 aa9.24□□□□□ -0.93
CUBNP3-201ENST00000457461 USP35Q9P2H5 1018 aa9.24□□□□□ -0.93
CUBNP3-201ENST00000457461 YEATS2Q9ULM3 1422 aa9.24□□□□□ -0.93
CUBNP3-201ENST00000457461 WASHC2CQ9Y4E1 1318 aa9.24□□□□□ -0.93
CUBNP3-201ENST00000457461 COL17A1Q9UMD9 1497 aaPredicted RBP9.24□□□□□ -0.93
CUBNP3-201ENST00000457461 TRPM2O94759 1503 aa9.24□□□□□ -0.93
CUBNP3-201ENST00000457461 AGLP35573 1532 aa9.24□□□□□ -0.93
CUBNP3-201ENST00000457461 PTPRTO14522 1441 aa9.24□□□□□ -0.93
CUBNP3-201ENST00000457461 DNAJC5Q9H3Z4 198 aa9.23□□□□□ -0.93
CUBNP3-201ENST00000457461 NEURL4Q96JN8 1562 aa9.23□□□□□ -0.93
CUBNP3-201ENST00000457461 ABCC3O15438 1527 aa9.22□□□□□ -0.93
CUBNP3-201ENST00000457461 KANK1Q14678 1352 aa9.22□□□□□ -0.93
CUBNP3-201ENST00000457461 SIGLEC1Q9BZZ2 1709 aa9.22□□□□□ -0.93
CUBNP3-201ENST00000457461 IL27Q8NEV9 243 aa9.22□□□□□ -0.93
CUBNP3-201ENST00000457461 CAMSAP1Q5T5Y3 1602 aa9.21□□□□□ -0.94
CUBNP3-201ENST00000457461 KIF3BO15066 747 aa9.21□□□□□ -0.94
CUBNP3-201ENST00000457461 WASHC2AQ641Q2 1341 aa9.21□□□□□ -0.94
CUBNP3-201ENST00000457461 CENPJQ9HC77 1338 aaPredicted RBP9.2□□□□□ -0.94
CUBNP3-201ENST00000457461 CLTCL1P53675 1640 aa9.2□□□□□ -0.94
CUBNP3-201ENST00000457461 CCDC144AA2RUR9 1427 aa9.2□□□□□ -0.94
CUBNP3-201ENST00000457461 UHRF1BP1Q6BDS2 1440 aa9.2□□□□□ -0.94
CUBNP3-201ENST00000457461 HSP90B1P14625 803 aaKnown RBP9.19□□□□□ -0.94
CUBNP3-201ENST00000457461 MIER1Q8N108 512 aa9.19□□□□□ -0.94
CUBNP3-201ENST00000457461 L3MBTL2Q969R5 705 aa9.19□□□□□ -0.94
CUBNP3-201ENST00000457461 CHMP4AQ9BY43 222 aa9.19□□□□□ -0.94
CUBNP3-201ENST00000457461 ATF5Q9Y2D1 282 aaPredicted RBP9.19□□□□□ -0.94
CUBNP3-201ENST00000457461 NAP1L5Q96NT1 182 aaPredicted RBP9.19□□□□□ -0.94
CUBNP3-201ENST00000457461 U3KPZ7 1027 aaPredicted RBP9.19□□□□□ -0.94
CUBNP3-201ENST00000457461 A0A0U1RQG5 324 aaPredicted RBP9.18□□□□□ -0.94
CUBNP3-201ENST00000457461 ARHGAP31Q2M1Z3 1444 aa9.18□□□□□ -0.94
CUBNP3-201ENST00000457461 SPATA31E1Q6ZUB1 1445 aa9.18□□□□□ -0.94
CUBNP3-201ENST00000457461 NPATQ14207 1427 aa9.17□□□□□ -0.94
CUBNP3-201ENST00000457461 KIF1BO60333 1816 aa9.17□□□□□ -0.94
CUBNP3-201ENST00000457461 RTL5Q5HYW3 569 aaPredicted RBP9.17□□□□□ -0.94
CUBNP3-201ENST00000457461 FAM43AQ8N2R8 423 aa9.17□□□□□ -0.94
CUBNP3-201ENST00000457461 PIK3C2BO00750 1634 aa9.16□□□□□ -0.94
CUBNP3-201ENST00000457461 IPO4Q8TEX9 1081 aaKnown RBP9.16□□□□□ -0.94
CUBNP3-201ENST00000457461 IFT172Q9UG01 1749 aa9.16□□□□□ -0.94
CUBNP3-201ENST00000457461 NOS1P29475 1434 aa9.15□□□□□ -0.94
CUBNP3-201ENST00000457461 NCLP19338 710 aaKnown RBP9.15□□□□□ -0.94
CUBNP3-201ENST00000457461 CALD1Q05682 793 aaKnown RBP9.15□□□□□ -0.94
CUBNP3-201ENST00000457461 CFAP65Q6ZU64 1925 aaKnown RBP9.15□□□□□ -0.94
CUBNP3-201ENST00000457461 RALGAPBQ86X10 1494 aa9.15□□□□□ -0.95
CUBNP3-201ENST00000457461 CNTLNQ9NXG0 1405 aa9.15□□□□□ -0.95
CUBNP3-201ENST00000457461 PREX1Q8TCU6 1659 aa9.14□□□□□ -0.95
CUBNP3-201ENST00000457461 TRPM1Q7Z4N2 1603 aa9.14□□□□□ -0.95
CUBNP3-201ENST00000457461 SYNMO15061 1565 aa9.14□□□□□ -0.95
CUBNP3-201ENST00000457461 CHRM1P11229 460 aaPredicted RBP9.14□□□□□ -0.95
CUBNP3-201ENST00000457461 NBPF8Q3BBV2 869 aa9.14□□□□□ -0.95
CUBNP3-201ENST00000457461 MROH2AA6NES4 1674 aa9.14□□□□□ -0.95
CUBNP3-201ENST00000457461 LAMC1P11047 1609 aa9.14□□□□□ -0.95
CUBNP3-201ENST00000457461 ADGRB3O60242 1522 aa9.13□□□□□ -0.95
CUBNP3-201ENST00000457461 POLR1AO95602 1720 aaPredicted RBP9.13□□□□□ -0.95
CUBNP3-201ENST00000457461 NOP58Q9Y2X3 529 aaKnown RBP9.13□□□□□ -0.95
CUBNP3-201ENST00000457461 PRAG1Q86YV5 1406 aa9.13□□□□□ -0.95
CUBNP3-201ENST00000457461 UGGT1Q9NYU2 1555 aa9.12□□□□□ -0.95
CUBNP3-201ENST00000457461 SAMD1Q6SPF0 538 aaPredicted RBP9.12□□□□□ -0.95
CUBNP3-201ENST00000457461 ARID3AQ99856 593 aa9.12□□□□□ -0.95
CUBNP3-201ENST00000457461 CLTCQ00610 1675 aaKnown RBP9.12□□□□□ -0.95
CUBNP3-201ENST00000457461 MADDQ8WXG6 1647 aa9.12□□□□□ -0.95
CUBNP3-201ENST00000457461 VGFO15240 615 aaPredicted RBP9.12□□□□□ -0.95
CUBNP3-201ENST00000457461 GGT6Q6P531 493 aa9.12□□□□□ -0.95
CUBNP3-201ENST00000457461 NAP1L2Q9ULW6 460 aaPredicted RBP9.12□□□□□ -0.95
CUBNP3-201ENST00000457461 KIAA1210Q9ULL0 1709 aa9.11□□□□□ -0.95
CUBNP3-201ENST00000457461 TAOK2Q9UL54 1235 aa9.11□□□□□ -0.95
CUBNP3-201ENST00000457461 PPLO60437 1756 aa9.11□□□□□ -0.95
CUBNP3-201ENST00000457461 MYOM2P54296 1465 aa9.1□□□□□ -0.95
CUBNP3-201ENST00000457461 HSP90AA2PQ14568 343 aaPredicted RBP9.1□□□□□ -0.95
CUBNP3-201ENST00000457461 SPATA31D1Q6ZQQ2 1576 aa9.1□□□□□ -0.95
CUBNP3-201ENST00000457461 C14orf37Q86TY3 774 aa9.09□□□□□ -0.95
CUBNP3-201ENST00000457461 TEX2Q8IWB9 1127 aa9.09□□□□□ -0.95
CUBNP3-201ENST00000457461 STAC3Q96MF2 364 aa9.09□□□□□ -0.95
CUBNP3-201ENST00000457461 GPRASP1Q5JY77 1395 aa9.09□□□□□ -0.95
CUBNP3-201ENST00000457461 NRXN1Q9ULB1 1477 aa9.09□□□□□ -0.95
CUBNP3-201ENST00000457461 CDK11BP21127 795 aaKnown RBP9.09□□□□□ -0.95
CUBNP3-201ENST00000457461 ERVK-7P63135 1459 aa9.08□□□□□ -0.96
CUBNP3-201ENST00000457461 ARID4BQ4LE39 1312 aaPredicted RBP9.08□□□□□ -0.96
CUBNP3-201ENST00000457461 MYO5BQ9ULV0 1848 aa9.08□□□□□ -0.96
CUBNP3-201ENST00000457461 TMEM131LA2VDJ0 1609 aa9.07□□□□□ -0.96
CUBNP3-201ENST00000457461 HMGB1P09429 215 aaKnown RBP9.07□□□□□ -0.96
CUBNP3-201ENST00000457461 FKBP8Q14318 412 aa9.07□□□□□ -0.96
CUBNP3-201ENST00000457461 DCAF11Q8TEB1 546 aa9.07□□□□□ -0.96
CUBNP3-201ENST00000457461 IQGAP1P46940 1657 aa9.06□□□□□ -0.96
CUBNP3-201ENST00000457461 TRHP20396 242 aaPredicted RBP9.06□□□□□ -0.96
CUBNP3-201ENST00000457461 EIF4G2P78344 907 aaKnown RBP eCLIP9.06□□□□□ -0.96
CUBNP3-201ENST00000457461 PRDM4Q9UKN5 801 aa9.06□□□□□ -0.96
CUBNP3-201ENST00000457461 KDM5AP29375 1690 aaKnown RBP9.05□□□□□ -0.96
CUBNP3-201ENST00000457461 HSPA5P11021 654 aaKnown RBP9.05□□□□□ -0.96
CUBNP3-201ENST00000457461 NEXMIFQ5QGS0 1516 aa9.05□□□□□ -0.96
CUBNP3-201ENST00000457461 FER1L4A9Z1Z3 1794 aa9.04□□□□□ -0.96
CUBNP3-201ENST00000457461 PPM1GO15355 546 aaPredicted RBP9.04□□□□□ -0.96
CUBNP3-201ENST00000457461 USP47Q96K76 1375 aa9.04□□□□□ -0.96
CUBNP3-201ENST00000457461 RGL3Q3MIN7 710 aa9.04□□□□□ -0.96
CUBNP3-201ENST00000457461 SLC52A1Q9NWF4 448 aa9.04□□□□□ -0.96
CUBNP3-201ENST00000457461 SETBP1Q9Y6X0 1596 aa9.03□□□□□ -0.96
CUBNP3-201ENST00000457461 PAXIP1Q6ZW49 1069 aaPredicted RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms