RNA–Protein interactions for RNA: ENST00000442975.6

CDKN3-204, Transcript of cyclin dependent kinase inhibitor 3, humanhuman

TSL 1 (best) BASIC

Gene CDKN3, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN3-204ENST00000442975 HDGFP51858 240 aaKnown RBP31.55■■■□□ 2.64
CDKN3-204ENST00000442975 SLC4A1APQ9BWU0 796 aaKnown RBP31.54■■■□□ 2.64
CDKN3-204ENST00000442975 NUTM2DQ5VT03 806 aaPredicted RBP31.53■■■□□ 2.64
CDKN3-204ENST00000442975 MYO5BQ9ULV0 1848 aa31.53■■■□□ 2.64
CDKN3-204ENST00000442975 LRRC7Q96NW7 1537 aa31.53■■■□□ 2.64
CDKN3-204ENST00000442975 PLEKHG1Q9ULL1 1385 aa31.53■■■□□ 2.64
CDKN3-204ENST00000442975 TRPM2O94759 1503 aa31.52■■■□□ 2.64
CDKN3-204ENST00000442975 STRCP1A6NGW2 1772 aa31.52■■■□□ 2.64
CDKN3-204ENST00000442975 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.51■■■□□ 2.63
CDKN3-204ENST00000442975 SCAF1Q9H7N4 1312 aaKnown RBP31.49■■■□□ 2.63
CDKN3-204ENST00000442975 ZNF326Q5BKZ1 582 aaKnown RBP31.47■■■□□ 2.63
CDKN3-204ENST00000442975 CLTCL1P53675 1640 aa31.46■■■□□ 2.63
CDKN3-204ENST00000442975 TOM1O60784 492 aa31.46■■■□□ 2.63
CDKN3-204ENST00000442975 PIP4K2BP78356 416 aa31.46■■■□□ 2.63
CDKN3-204ENST00000442975 KCNA6P17658 529 aa31.42■■■□□ 2.62
CDKN3-204ENST00000442975 FOXD1Q16676 465 aa31.4■■■□□ 2.62
CDKN3-204ENST00000442975 SETD5Q9C0A6 1442 aa31.4■■■□□ 2.62
CDKN3-204ENST00000442975 TMEM94Q12767 1356 aa31.37■■■□□ 2.61
CDKN3-204ENST00000442975 NWD1Q149M9 1564 aa31.37■■■□□ 2.61
CDKN3-204ENST00000442975 NKTRP30414 1462 aaKnown RBP31.36■■■□□ 2.61
CDKN3-204ENST00000442975 ADAMTS13Q76LX8 1427 aa31.36■■■□□ 2.61
CDKN3-204ENST00000442975 MPHOSPH9Q99550 1183 aa31.35■■■□□ 2.61
CDKN3-204ENST00000442975 PROSER2Q86WR7 435 aaPredicted RBP31.34■■■□□ 2.61
CDKN3-204ENST00000442975 RBM33Q96EV2 1170 aaKnown RBP31.34■■■□□ 2.61
CDKN3-204ENST00000442975 TBX22Q9Y458 520 aa31.34■■■□□ 2.61
CDKN3-204ENST00000442975 DIP2AQ14689 1571 aa31.33■■■□□ 2.61
CDKN3-204ENST00000442975 RAB3GAP2Q9H2M9 1393 aa31.32■■■□□ 2.6
CDKN3-204ENST00000442975 ALKQ9UM73 1620 aa31.32■■■□□ 2.6
CDKN3-204ENST00000442975 NEXMIFQ5QGS0 1516 aa31.3■■■□□ 2.6
CDKN3-204ENST00000442975 CCDC144AA2RUR9 1427 aa31.28■■■□□ 2.6
CDKN3-204ENST00000442975 ACIN1Q9UKV3 1341 aaKnown RBP31.26■■■□□ 2.6
CDKN3-204ENST00000442975 KIF1BO60333 1816 aa31.26■■■□□ 2.59
CDKN3-204ENST00000442975 SETBP1Q9Y6X0 1596 aa31.26■■■□□ 2.59
CDKN3-204ENST00000442975 HSPA1LP34931 641 aa31.24■■■□□ 2.59
CDKN3-204ENST00000442975 PIK3R4Q99570 1358 aa31.24■■■□□ 2.59
CDKN3-204ENST00000442975 XIRP1Q702N8 1843 aaKnown RBP31.23■■■□□ 2.59
CDKN3-204ENST00000442975 NRXN3Q9Y4C0 1643 aa31.23■■■□□ 2.59
CDKN3-204ENST00000442975 MSH6P52701 1360 aa31.2■■■□□ 2.59
CDKN3-204ENST00000442975 CHD2O14647 1828 aaKnown RBP31.19■■■□□ 2.58
CDKN3-204ENST00000442975 C14orf37Q86TY3 774 aa31.18■■■□□ 2.58
CDKN3-204ENST00000442975 PTPRUQ92729 1446 aa31.17■■■□□ 2.58
CDKN3-204ENST00000442975 AMOTL2Q9Y2J4 779 aa31.17■■■□□ 2.58
CDKN3-204ENST00000442975 RPGRIP1LQ68CZ1 1315 aa31.16■■■□□ 2.58
CDKN3-204ENST00000442975 METP08581 1390 aa31.16■■■□□ 2.58
CDKN3-204ENST00000442975 VGFO15240 615 aaPredicted RBP31.15■■■□□ 2.58
CDKN3-204ENST00000442975 RGL3Q3MIN7 710 aa31.13■■■□□ 2.57
CDKN3-204ENST00000442975 DISP3Q9P2K9 1392 aa31.12■■■□□ 2.57
CDKN3-204ENST00000442975 SPATA31E1Q6ZUB1 1445 aa31.11■■■□□ 2.57
CDKN3-204ENST00000442975 NCOA3Q9Y6Q9 1424 aa31.07■■■□□ 2.57
CDKN3-204ENST00000442975 XRN1Q8IZH2 1706 aaKnown RBP31.07■■■□□ 2.56
CDKN3-204ENST00000442975 FAM135BQ49AJ0 1406 aa31.05■■■□□ 2.56
CDKN3-204ENST00000442975 PPLO60437 1756 aa31.05■■■□□ 2.56
CDKN3-204ENST00000442975 ANKRD30BQ9BXX2 1392 aa31.02■■■□□ 2.56
CDKN3-204ENST00000442975 ADGRF5Q8IZF2 1346 aa31.01■■■□□ 2.56
CDKN3-204ENST00000442975 SLAIN2Q9P270 581 aa31.01■■■□□ 2.55
CDKN3-204ENST00000442975 ATF3P18847 181 aa31■■■□□ 2.55
CDKN3-204ENST00000442975 C19orf44Q9H6X5 657 aa31■■■□□ 2.55
CDKN3-204ENST00000442975 ROBO1Q9Y6N7 1651 aa30.99■■■□□ 2.55
CDKN3-204ENST00000442975 HRCP23327 699 aa30.98■■■□□ 2.55
CDKN3-204ENST00000442975 CADPS2Q86UW7 1296 aa30.98■■■□□ 2.55
CDKN3-204ENST00000442975 SETD1AO15047 1707 aaKnown RBP30.95■■■□□ 2.55
CDKN3-204ENST00000442975 PTCH1Q13635 1447 aa30.95■■■□□ 2.54
CDKN3-204ENST00000442975 SIPA1L2Q9P2F8 1722 aaPredicted RBP30.94■■■□□ 2.54
CDKN3-204ENST00000442975 IFT172Q9UG01 1749 aa30.92■■■□□ 2.54
CDKN3-204ENST00000442975 MED1Q15648 1581 aaPredicted RBP30.92■■■□□ 2.54
CDKN3-204ENST00000442975 ROBO2Q9HCK4 1378 aa30.92■■■□□ 2.54
CDKN3-204ENST00000442975 PIK3C2GO75747 1445 aa30.91■■■□□ 2.54
CDKN3-204ENST00000442975 DCCP43146 1447 aa30.91■■■□□ 2.54
CDKN3-204ENST00000442975 ADGRL3Q9HAR2 1447 aa30.91■■■□□ 2.54
CDKN3-204ENST00000442975 PRAG1Q86YV5 1406 aa30.87■■■□□ 2.53
CDKN3-204ENST00000442975 MYOM2P54296 1465 aa30.86■■■□□ 2.53
CDKN3-204ENST00000442975 STK26Q9P289 416 aa30.85■■■□□ 2.53
CDKN3-204ENST00000442975 ASXL1Q8IXJ9 1541 aa30.83■■■□□ 2.53
CDKN3-204ENST00000442975 NALCNQ8IZF0 1738 aa30.83■■■□□ 2.53
CDKN3-204ENST00000442975 TMEM132EQ6IEE7 984 aa30.82■■■□□ 2.52
CDKN3-204ENST00000442975 MST1RQ04912 1400 aa30.81■■■□□ 2.52
CDKN3-204ENST00000442975 NRXN1Q9ULB1 1477 aa30.81■■■□□ 2.52
CDKN3-204ENST00000442975 LRPPRCP42704 1394 aaKnown RBP30.79■■■□□ 2.52
CDKN3-204ENST00000442975 BRINP3Q76B58 766 aa30.79■■■□□ 2.52
CDKN3-204ENST00000442975 PHF23Q9BUL5 403 aaPredicted RBP30.79■■■□□ 2.52
CDKN3-204ENST00000442975 PHLPP1O60346 1717 aa30.78■■■□□ 2.52
CDKN3-204ENST00000442975 ILDR2Q71H61 639 aa30.77■■■□□ 2.52
CDKN3-204ENST00000442975 TECPR2O15040 1411 aa30.76■■■□□ 2.51
CDKN3-204ENST00000442975 CFAP70Q5T0N1 1121 aa30.76■■■□□ 2.51
CDKN3-204ENST00000442975 YTHDC2Q9H6S0 1430 aaKnown RBP30.75■■■□□ 2.51
CDKN3-204ENST00000442975 C14orf93Q9H972 538 aaKnown RBP30.75■■■□□ 2.51
CDKN3-204ENST00000442975 KDM2AQ9Y2K7 1162 aa30.75■■■□□ 2.51
CDKN3-204ENST00000442975 DCAF11Q8TEB1 546 aa30.74■■■□□ 2.51
CDKN3-204ENST00000442975 AHDC1Q5TGY3 1603 aaPredicted RBP30.73■■■□□ 2.51
CDKN3-204ENST00000442975 ABCC11Q96J66 1382 aa30.72■■■□□ 2.51
CDKN3-204ENST00000442975 LAMC1P11047 1609 aa30.72■■■□□ 2.51
CDKN3-204ENST00000442975 COL16A1Q07092 1604 aaPredicted RBP30.72■■■□□ 2.51
CDKN3-204ENST00000442975 JCADQ9P266 1359 aa30.71■■■□□ 2.51
CDKN3-204ENST00000442975 WAPLQ7Z5K2 1190 aa30.71■■■□□ 2.51
CDKN3-204ENST00000442975 C1orf167Q5SNV9 1468 aa30.7■■■□□ 2.5
CDKN3-204ENST00000442975 PLEKHH1Q9ULM0 1364 aa30.69■■■□□ 2.5
CDKN3-204ENST00000442975 DHX57Q6P158 1386 aaKnown RBP30.68■■■□□ 2.5
CDKN3-204ENST00000442975 KNDC1Q76NI1 1749 aa30.67■■■□□ 2.5
CDKN3-204ENST00000442975 CDC42BPGQ6DT37 1551 aa30.66■■■□□ 2.5
CDKN3-204ENST00000442975 DDX17Q92841 729 aaKnown RBP30.63■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 114 ms