RNA–Protein interactions for RNA: ENST00000441443.6

SHOX2-203, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHOX2, Length 3,038 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-203ENST00000441443 WDR43Q15061 677 aaKnown RBP eCLIP26.23■■□□□ 1.79
SHOX2-203ENST00000441443 SLKQ9H2G2 1235 aaPredicted RBP26.23■■□□□ 1.79
SHOX2-203ENST00000441443 PRAG1Q86YV5 1406 aa26.23■■□□□ 1.79
SHOX2-203ENST00000441443 MYO5CQ9NQX4 1742 aa26.23■■□□□ 1.79
SHOX2-203ENST00000441443 USP19O94966 1318 aa26.2■■□□□ 1.79
SHOX2-203ENST00000441443 SEC24BO95487 1268 aa26.2■■□□□ 1.79
SHOX2-203ENST00000441443 ARXQ96QS3 562 aa26.2■■□□□ 1.79
SHOX2-203ENST00000441443 COL17A1Q9UMD9 1497 aaPredicted RBP26.2■■□□□ 1.79
SHOX2-203ENST00000441443 RRAGDQ9NQL2 400 aaPredicted RBP26.2■■□□□ 1.78
SHOX2-203ENST00000441443 ZCCHC11Q5TAX3 1644 aaKnown RBP26.19■■□□□ 1.78
SHOX2-203ENST00000441443 IGHDP01880 384 aa26.18■■□□□ 1.78
SHOX2-203ENST00000441443 BCAR3O75815 825 aa26.17■■□□□ 1.78
SHOX2-203ENST00000441443 A2MP01023 1474 aa26.17■■□□□ 1.78
SHOX2-203ENST00000441443 KIF3BO15066 747 aa26.17■■□□□ 1.78
SHOX2-203ENST00000441443 TRPM1Q7Z4N2 1603 aa26.17■■□□□ 1.78
SHOX2-203ENST00000441443 ZNF521Q96K83 1311 aa26.16■■□□□ 1.78
SHOX2-203ENST00000441443 CCDC146Q8IYE0 955 aa26.16■■□□□ 1.78
SHOX2-203ENST00000441443 PPP2R1AP30153 589 aa26.15■■□□□ 1.78
SHOX2-203ENST00000441443 TMF1P82094 1093 aa26.15■■□□□ 1.78
SHOX2-203ENST00000441443 ERBINQ96RT1 1412 aa26.15■■□□□ 1.78
SHOX2-203ENST00000441443 SPINK5Q9NQ38 1064 aaPredicted RBP26.15■■□□□ 1.78
SHOX2-203ENST00000441443 SLFN5Q08AF3 891 aa26.14■■□□□ 1.78
SHOX2-203ENST00000441443 DUOX2Q9NRD8 1548 aa26.13■■□□□ 1.77
SHOX2-203ENST00000441443 KNSTRNQ9Y448 316 aa26.1■■□□□ 1.77
SHOX2-203ENST00000441443 BECN1Q14457 450 aa26.09■■□□□ 1.77
SHOX2-203ENST00000441443 CLASP1Q7Z460 1538 aa26.09■■□□□ 1.77
SHOX2-203ENST00000441443 GPRASP1Q5JY77 1395 aa26.09■■□□□ 1.77
SHOX2-203ENST00000441443 SCAPERQ9BY12 1400 aa26.08■■□□□ 1.77
SHOX2-203ENST00000441443 MAST1Q9Y2H9 1570 aa26.07■■□□□ 1.76
SHOX2-203ENST00000441443 EIF3AQ14152 1382 aaKnown RBP26.06■■□□□ 1.76
SHOX2-203ENST00000441443 UNC13BO14795 1591 aa26.06■■□□□ 1.76
SHOX2-203ENST00000441443 APAF1O14727 1248 aa26.05■■□□□ 1.76
SHOX2-203ENST00000441443 L1TD1Q5T7N2 865 aaKnown RBP26.05■■□□□ 1.76
SHOX2-203ENST00000441443 ABCC1P33527 1531 aa26.05■■□□□ 1.76
SHOX2-203ENST00000441443 PLXNC1O60486 1568 aa26.04■■□□□ 1.76
SHOX2-203ENST00000441443 MAGI2Q86UL8 1455 aa26.04■■□□□ 1.76
SHOX2-203ENST00000441443 CHGAP10645 457 aaKnown RBP26.04■■□□□ 1.76
SHOX2-203ENST00000441443 PRDM15P57071 1507 aaPredicted RBP26.02■■□□□ 1.76
SHOX2-203ENST00000441443 TRMT2AQ8IZ69 625 aaKnown RBP26.02■■□□□ 1.76
SHOX2-203ENST00000441443 UHRF1BP1LA0JNW5 1464 aa26.02■■□□□ 1.76
SHOX2-203ENST00000441443 FANCAO15360 1455 aa26.02■■□□□ 1.76
SHOX2-203ENST00000441443 SPRYD3Q8NCJ5 442 aa26.01■■□□□ 1.75
SHOX2-203ENST00000441443 ANTXR1Q9H6X2 564 aa26.01■■□□□ 1.75
SHOX2-203ENST00000441443 COG6Q9Y2V7 657 aa26.01■■□□□ 1.75
SHOX2-203ENST00000441443 NPM1P06748 294 aaKnown RBP eCLIP26.01■■□□□ 1.75
SHOX2-203ENST00000441443 AMER1Q5JTC6 1135 aaPredicted RBP26.01■■□□□ 1.75
SHOX2-203ENST00000441443 IQGAP3Q86VI3 1631 aa26.01■■□□□ 1.75
SHOX2-203ENST00000441443 PANK1Q8TE04 598 aa26.01■■□□□ 1.75
SHOX2-203ENST00000441443 DMRT2Q9Y5R5 561 aa26.01■■□□□ 1.75
SHOX2-203ENST00000441443 GZF1Q9H116 711 aaPredicted RBP26■■□□□ 1.75
SHOX2-203ENST00000441443 NKTRP30414 1462 aaKnown RBP25.99■■□□□ 1.75
SHOX2-203ENST00000441443 WDR7Q9Y4E6 1490 aa25.99■■□□□ 1.75
SHOX2-203ENST00000441443 XRCC6P12956 609 aaKnown RBP eCLIP25.98■■□□□ 1.75
SHOX2-203ENST00000441443 CANXP27824 592 aaKnown RBP25.98■■□□□ 1.75
SHOX2-203ENST00000441443 CLUAP1Q96AJ1 413 aa25.98■■□□□ 1.75
SHOX2-203ENST00000441443 SENP3Q9H4L4 574 aaPredicted RBP25.98■■□□□ 1.75
SHOX2-203ENST00000441443 MAPK8IP3Q9UPT6 1336 aa25.97■■□□□ 1.75
SHOX2-203ENST00000441443 NAP1L5Q96NT1 182 aaPredicted RBP25.97■■□□□ 1.75
SHOX2-203ENST00000441443 PANK2Q9BZ23 570 aa25.97■■□□□ 1.75
SHOX2-203ENST00000441443 KANK1Q14678 1352 aa25.96■■□□□ 1.75
SHOX2-203ENST00000441443 TBC1D2Q9BYX2 928 aa25.95■■□□□ 1.74
SHOX2-203ENST00000441443 ADGRL1O94910 1474 aa25.94■■□□□ 1.74
SHOX2-203ENST00000441443 GGT6Q6P531 493 aa25.94■■□□□ 1.74
SHOX2-203ENST00000441443 CGNL1Q0VF96 1302 aa25.94■■□□□ 1.74
SHOX2-203ENST00000441443 NLRP1Q9C000 1473 aa25.94■■□□□ 1.74
SHOX2-203ENST00000441443 GOLGA6L3A6NEY3 463 aa25.93■■□□□ 1.74
SHOX2-203ENST00000441443 E9PSI1 815 aa25.93■■□□□ 1.74
SHOX2-203ENST00000441443 VIRMAQ69YN4 1812 aaKnown RBP25.93■■□□□ 1.74
SHOX2-203ENST00000441443 ASXL2Q76L83 1435 aa25.92■■□□□ 1.74
SHOX2-203ENST00000441443 UPF2Q9HAU5 1272 aaKnown RBP25.91■■□□□ 1.74
SHOX2-203ENST00000441443 CFAP70Q5T0N1 1121 aa25.91■■□□□ 1.74
SHOX2-203ENST00000441443 PNNQ9H307 717 aaKnown RBP25.9■■□□□ 1.74
SHOX2-203ENST00000441443 ZFYVE16Q7Z3T8 1539 aa25.9■■□□□ 1.74
SHOX2-203ENST00000441443 PDE3AQ14432 1141 aa25.9■■□□□ 1.74
SHOX2-203ENST00000441443 TBC1D32Q96NH3 1257 aa25.89■■□□□ 1.74
SHOX2-203ENST00000441443 ATP10AO60312 1499 aa25.89■■□□□ 1.74
SHOX2-203ENST00000441443 CENPJQ9HC77 1338 aaPredicted RBP25.89■■□□□ 1.73
SHOX2-203ENST00000441443 OSCARQ8IYS5 282 aa25.88■■□□□ 1.73
SHOX2-203ENST00000441443 LAMC1P11047 1609 aa25.88■■□□□ 1.73
SHOX2-203ENST00000441443 RTEL1-TNFRSF6BF6WH68 1400 aa25.86■■□□□ 1.73
SHOX2-203ENST00000441443 MCM4P33991 863 aa25.86■■□□□ 1.73
SHOX2-203ENST00000441443 ATP7AQ04656 1500 aa25.85■■□□□ 1.73
SHOX2-203ENST00000441443 FSD2A1L4K1 749 aa25.85■■□□□ 1.73
SHOX2-203ENST00000441443 PKNOX2Q96KN3 472 aa25.85■■□□□ 1.73
SHOX2-203ENST00000441443 TNNQ9UQP3 1299 aa25.84■■□□□ 1.73
SHOX2-203ENST00000441443 PCDHB15Q9Y5E8 787 aa25.84■■□□□ 1.73
SHOX2-203ENST00000441443 PIK3C2GO75747 1445 aa25.84■■□□□ 1.73
SHOX2-203ENST00000441443 UGGT1Q9NYU2 1555 aa25.83■■□□□ 1.73
SHOX2-203ENST00000441443 ADGRF5Q8IZF2 1346 aa25.83■■□□□ 1.73
SHOX2-203ENST00000441443 PDZRN3Q9UPQ7 1066 aa25.83■■□□□ 1.73
SHOX2-203ENST00000441443 CLCN1P35523 988 aa25.82■■□□□ 1.72
SHOX2-203ENST00000441443 NEUROD2Q15784 382 aa25.82■■□□□ 1.72
SHOX2-203ENST00000441443 NUTM2DQ5VT03 806 aaPredicted RBP25.82■■□□□ 1.72
SHOX2-203ENST00000441443 GLIPR1L2Q4G1C9 344 aa25.82■■□□□ 1.72
SHOX2-203ENST00000441443 ASXL1Q8IXJ9 1541 aa25.81■■□□□ 1.72
SHOX2-203ENST00000441443 EIF2AK4Q9P2K8 1649 aaKnown RBP25.81■■□□□ 1.72
SHOX2-203ENST00000441443 VSIG10Q8N0Z9 540 aa25.81■■□□□ 1.72
SHOX2-203ENST00000441443 BCL2L13Q9BXK5 485 aa25.8■■□□□ 1.72
SHOX2-203ENST00000441443 RLBP1P12271 317 aa25.79■■□□□ 1.72
SHOX2-203ENST00000441443 CFAP65Q6ZU64 1925 aaKnown RBP25.79■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms