RNA–Protein interactions for RNA: ENST00000440400.1

ACTN4-204, Transcript of actinin alpha 4, humanhuman

TSL 5

Gene ACTN4, Length 3,180 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4-204ENST00000440400 SUPT16HQ9Y5B9 1047 aaKnown RBP18.34■□□□□ 0.53
ACTN4-204ENST00000440400 ANP32CO43423 234 aa18.34■□□□□ 0.53
ACTN4-204ENST00000440400 NEXMIFQ5QGS0 1516 aa18.33■□□□□ 0.52
ACTN4-204ENST00000440400 TMEM131LA2VDJ0 1609 aa18.32■□□□□ 0.52
ACTN4-204ENST00000440400 SCAF11Q99590 1463 aaKnown RBP18.31■□□□□ 0.52
ACTN4-204ENST00000440400 PPP6R1Q9UPN7 881 aa18.31■□□□□ 0.52
ACTN4-204ENST00000440400 SPATA31D1Q6ZQQ2 1576 aa18.3■□□□□ 0.52
ACTN4-204ENST00000440400 KDM2AQ9Y2K7 1162 aa18.3■□□□□ 0.52
ACTN4-204ENST00000440400 PIK3C2GO75747 1445 aa18.3■□□□□ 0.52
ACTN4-204ENST00000440400 ADGRB1O14514 1584 aa18.29■□□□□ 0.52
ACTN4-204ENST00000440400 MYOM1P52179 1685 aa18.29■□□□□ 0.52
ACTN4-204ENST00000440400 ZFYVE9O95405 1425 aa18.29■□□□□ 0.52
ACTN4-204ENST00000440400 CLTCQ00610 1675 aaKnown RBP18.28■□□□□ 0.52
ACTN4-204ENST00000440400 TESK2Q96S53 571 aa18.28■□□□□ 0.52
ACTN4-204ENST00000440400 NBPF1Q3BBV0 1214 aa18.28■□□□□ 0.52
ACTN4-204ENST00000440400 RPGRIP1LQ68CZ1 1315 aa18.27■□□□□ 0.52
ACTN4-204ENST00000440400 ZNF326Q5BKZ1 582 aaKnown RBP18.27■□□□□ 0.51
ACTN4-204ENST00000440400 MYT1LQ9UL68 1186 aa18.27■□□□□ 0.51
ACTN4-204ENST00000440400 RGL3Q3MIN7 710 aa18.26■□□□□ 0.51
ACTN4-204ENST00000440400 KDM5AP29375 1690 aaKnown RBP18.26■□□□□ 0.51
ACTN4-204ENST00000440400 ST20-MTHFSA0A0A6YYL1 179 aa18.26■□□□□ 0.51
ACTN4-204ENST00000440400 MYO5BQ9ULV0 1848 aa18.26■□□□□ 0.51
ACTN4-204ENST00000440400 ERVK-7P63135 1459 aa18.26■□□□□ 0.51
ACTN4-204ENST00000440400 KTN1Q86UP2 1357 aaKnown RBP18.24■□□□□ 0.51
ACTN4-204ENST00000440400 PRKRIP1Q9H875 184 aaPredicted RBP18.23■□□□□ 0.51
ACTN4-204ENST00000440400 WASHC2CQ9Y4E1 1318 aa18.23■□□□□ 0.51
ACTN4-204ENST00000440400 SBNO2Q9Y2G9 1366 aa18.21■□□□□ 0.51
ACTN4-204ENST00000440400 DISP3Q9P2K9 1392 aa18.2■□□□□ 0.5
ACTN4-204ENST00000440400 ARHGEF28Q8N1W1 1705 aaKnown RBP18.19■□□□□ 0.5
ACTN4-204ENST00000440400 GGT6Q6P531 493 aa18.19■□□□□ 0.5
ACTN4-204ENST00000440400 CFAP65Q6ZU64 1925 aaKnown RBP18.19■□□□□ 0.5
ACTN4-204ENST00000440400 EIF3AQ14152 1382 aaKnown RBP18.18■□□□□ 0.5
ACTN4-204ENST00000440400 SETD1AO15047 1707 aaKnown RBP18.17■□□□□ 0.5
ACTN4-204ENST00000440400 QRICH2Q9H0J4 1663 aa18.17■□□□□ 0.5
ACTN4-204ENST00000440400 ADGRF5Q8IZF2 1346 aa18.17■□□□□ 0.5
ACTN4-204ENST00000440400 SLC52A1Q9NWF4 448 aa18.16■□□□□ 0.5
ACTN4-204ENST00000440400 ASXL1Q8IXJ9 1541 aa18.15■□□□□ 0.5
ACTN4-204ENST00000440400 BCANQ96GW7 911 aa18.14■□□□□ 0.49
ACTN4-204ENST00000440400 C14orf93Q9H972 538 aaKnown RBP18.12■□□□□ 0.49
ACTN4-204ENST00000440400 PARD3Q8TEW0 1356 aa18.12■□□□□ 0.49
ACTN4-204ENST00000440400 PER1O15534 1290 aaPredicted RBP18.11■□□□□ 0.49
ACTN4-204ENST00000440400 TMF1P82094 1093 aa18.1■□□□□ 0.49
ACTN4-204ENST00000440400 USP32Q8NFA0 1604 aa18.1■□□□□ 0.49
ACTN4-204ENST00000440400 A2ML1A8K2U0 1454 aa18.08■□□□□ 0.49
ACTN4-204ENST00000440400 NRXN3Q9Y4C0 1643 aa18.07■□□□□ 0.48
ACTN4-204ENST00000440400 NPC1L1Q9UHC9 1359 aa18.06■□□□□ 0.48
ACTN4-204ENST00000440400 IDI1Q13907 227 aa18.06■□□□□ 0.48
ACTN4-204ENST00000440400 CFAP70Q5T0N1 1121 aa18.06■□□□□ 0.48
ACTN4-204ENST00000440400 INSRP06213 1382 aa18.06■□□□□ 0.48
ACTN4-204ENST00000440400 UBR1Q8IWV7 1749 aa18.06■□□□□ 0.48
ACTN4-204ENST00000440400 RALBP1Q15311 655 aa18.05■□□□□ 0.48
ACTN4-204ENST00000440400 KNDC1Q76NI1 1749 aa18.05■□□□□ 0.48
ACTN4-204ENST00000440400 BRD4O60885 1362 aaPredicted RBP18.05■□□□□ 0.48
ACTN4-204ENST00000440400 ALKQ9UM73 1620 aa18.04■□□□□ 0.48
ACTN4-204ENST00000440400 DLC1Q96QB1 1528 aa18.04■□□□□ 0.48
ACTN4-204ENST00000440400 CCDC184Q52MB2 194 aa18.04■□□□□ 0.48
ACTN4-204ENST00000440400 CDCA8Q53HL2 280 aa18.03■□□□□ 0.48
ACTN4-204ENST00000440400 LRPPRCP42704 1394 aaKnown RBP18.03■□□□□ 0.48
ACTN4-204ENST00000440400 VGFO15240 615 aaPredicted RBP18.02■□□□□ 0.48
ACTN4-204ENST00000440400 PUS7Q96PZ0 661 aaKnown RBP18.01■□□□□ 0.47
ACTN4-204ENST00000440400 PTPRMP28827 1452 aa18.01■□□□□ 0.47
ACTN4-204ENST00000440400 MYBBP1AQ9BQG0 1328 aaKnown RBP18.01■□□□□ 0.47
ACTN4-204ENST00000440400 TULP4Q9NRJ4 1543 aa18.01■□□□□ 0.47
ACTN4-204ENST00000440400 C3P01024 1663 aa18■□□□□ 0.47
ACTN4-204ENST00000440400 FER1L4A9Z1Z3 1794 aa17.99■□□□□ 0.47
ACTN4-204ENST00000440400 ZMYM3Q14202 1370 aa17.98■□□□□ 0.47
ACTN4-204ENST00000440400 FBXO31Q5XUX0 539 aaPredicted RBP17.96■□□□□ 0.47
ACTN4-204ENST00000440400 CENPJQ9HC77 1338 aaPredicted RBP17.95■□□□□ 0.46
ACTN4-204ENST00000440400 NLRP1Q9C000 1473 aa17.95■□□□□ 0.46
ACTN4-204ENST00000440400 MRS2Q9HD23 443 aa17.94■□□□□ 0.46
ACTN4-204ENST00000440400 RBM19Q9Y4C8 960 aaKnown RBP17.94■□□□□ 0.46
ACTN4-204ENST00000440400 PANK3Q9H999 370 aa17.93■□□□□ 0.46
ACTN4-204ENST00000440400 RIMS2Q9UQ26 1411 aa17.93■□□□□ 0.46
ACTN4-204ENST00000440400 ZBED9Q6R2W3 1325 aa17.93■□□□□ 0.46
ACTN4-204ENST00000440400 PNISRQ8TF01 805 aaKnown RBP17.93■□□□□ 0.46
ACTN4-204ENST00000440400 YTHDC2Q9H6S0 1430 aaKnown RBP17.91■□□□□ 0.46
ACTN4-204ENST00000440400 ANO8Q9HCE9 1232 aaPredicted RBP17.91■□□□□ 0.46
ACTN4-204ENST00000440400 CPS1P31327 1500 aa17.91■□□□□ 0.46
ACTN4-204ENST00000440400 AMER1Q5JTC6 1135 aaPredicted RBP17.91■□□□□ 0.46
ACTN4-204ENST00000440400 CHGAP10645 457 aaKnown RBP17.9■□□□□ 0.46
ACTN4-204ENST00000440400 SLIT1O75093 1534 aa17.9■□□□□ 0.46
ACTN4-204ENST00000440400 TNRQ92752 1358 aa17.9■□□□□ 0.46
ACTN4-204ENST00000440400 ANKRD26Q9UPS8 1709 aa17.9■□□□□ 0.46
ACTN4-204ENST00000440400 BLMP54132 1417 aaPredicted RBP17.9■□□□□ 0.46
ACTN4-204ENST00000440400 TECPR2O15040 1411 aa17.89■□□□□ 0.45
ACTN4-204ENST00000440400 NLRP13Q86W25 1043 aa17.89■□□□□ 0.45
ACTN4-204ENST00000440400 ARHGAP23Q9P227 1491 aa17.88■□□□□ 0.45
ACTN4-204ENST00000440400 NINLQ9Y2I6 1382 aa17.88■□□□□ 0.45
ACTN4-204ENST00000440400 POLR3GLQ9BT43 218 aa17.88■□□□□ 0.45
ACTN4-204ENST00000440400 MED14O60244 1454 aa17.86■□□□□ 0.45
ACTN4-204ENST00000440400 MSH5O43196 834 aa17.86■□□□□ 0.45
ACTN4-204ENST00000440400 ZNF142P52746 1687 aaPredicted RBP17.85■□□□□ 0.45
ACTN4-204ENST00000440400 ADGRB2O60241 1585 aa17.85■□□□□ 0.45
ACTN4-204ENST00000440400 ADAMTSL3P82987 1691 aa17.84■□□□□ 0.45
ACTN4-204ENST00000440400 FKBP8Q14318 412 aa17.84■□□□□ 0.45
ACTN4-204ENST00000440400 DIP2AQ14689 1571 aa17.84■□□□□ 0.45
ACTN4-204ENST00000440400 HNRNPUQ00839 825 aaKnown RBP eCLIP17.83■□□□□ 0.45
ACTN4-204ENST00000440400 ABCC11Q96J66 1382 aa17.83■□□□□ 0.44
ACTN4-204ENST00000440400 TMEM132EQ6IEE7 984 aa17.83■□□□□ 0.44
ACTN4-204ENST00000440400 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms