RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 ERICH6Q7L0X2 663 aa22.02■■□□□ 1.12
CLCNKA-203ENST00000439316 EFCAB6Q5THR3 1501 aa22.01■■□□□ 1.11
CLCNKA-203ENST00000439316 LMTK2Q8IWU2 1503 aa22.01■■□□□ 1.11
CLCNKA-203ENST00000439316 CCDC136Q96JN2 1154 aa21.99■■□□□ 1.11
CLCNKA-203ENST00000439316 PTPRTO14522 1441 aa21.99■■□□□ 1.11
CLCNKA-203ENST00000439316 NLRP13Q86W25 1043 aa21.99■■□□□ 1.11
CLCNKA-203ENST00000439316 TRPM2O94759 1503 aa21.98■■□□□ 1.11
CLCNKA-203ENST00000439316 TRHP20396 242 aaPredicted RBP21.98■■□□□ 1.11
CLCNKA-203ENST00000439316 WASHC2CQ9Y4E1 1318 aa21.98■■□□□ 1.11
CLCNKA-203ENST00000439316 CFAP65Q6ZU64 1925 aaKnown RBP21.97■■□□□ 1.11
CLCNKA-203ENST00000439316 RGL3Q3MIN7 710 aa21.97■■□□□ 1.11
CLCNKA-203ENST00000439316 NBPF1Q3BBV0 1214 aa21.96■■□□□ 1.11
CLCNKA-203ENST00000439316 ABCC3O15438 1527 aa21.96■■□□□ 1.11
CLCNKA-203ENST00000439316 PER1O15534 1290 aaPredicted RBP21.96■■□□□ 1.11
CLCNKA-203ENST00000439316 SENP3-EIF4A1A0A087X0R7 540 aa21.95■■□□□ 1.1
CLCNKA-203ENST00000439316 INSRP06213 1382 aa21.94■■□□□ 1.1
CLCNKA-203ENST00000439316 REREQ9P2R6 1566 aa21.93■■□□□ 1.1
CLCNKA-203ENST00000439316 CLTCL1P53675 1640 aa21.93■■□□□ 1.1
CLCNKA-203ENST00000439316 TESK2Q96S53 571 aa21.93■■□□□ 1.1
CLCNKA-203ENST00000439316 DISP3Q9P2K9 1392 aa21.93■■□□□ 1.1
CLCNKA-203ENST00000439316 ARHGEF40Q8TER5 1519 aa21.92■■□□□ 1.1
CLCNKA-203ENST00000439316 RRP1P56182 461 aaKnown RBP21.92■■□□□ 1.1
CLCNKA-203ENST00000439316 NPATQ14207 1427 aa21.91■■□□□ 1.1
CLCNKA-203ENST00000439316 CAMSAP1Q5T5Y3 1602 aa21.91■■□□□ 1.1
CLCNKA-203ENST00000439316 PDE3BQ13370 1112 aa21.91■■□□□ 1.1
CLCNKA-203ENST00000439316 SIGLEC1Q9BZZ2 1709 aa21.91■■□□□ 1.1
CLCNKA-203ENST00000439316 BLMP54132 1417 aaPredicted RBP21.89■■□□□ 1.1
CLCNKA-203ENST00000439316 UGGT1Q9NYU2 1555 aa21.89■■□□□ 1.09
CLCNKA-203ENST00000439316 AGLP35573 1532 aa21.89■■□□□ 1.09
CLCNKA-203ENST00000439316 ZC3H13Q5T200 1668 aaKnown RBP21.88■■□□□ 1.09
CLCNKA-203ENST00000439316 RCAN3Q9UKA8 241 aa21.87■■□□□ 1.09
CLCNKA-203ENST00000439316 NOP58Q9Y2X3 529 aaKnown RBP21.84■■□□□ 1.09
CLCNKA-203ENST00000439316 MADDQ8WXG6 1647 aa21.84■■□□□ 1.09
CLCNKA-203ENST00000439316 KIF1BO60333 1816 aa21.83■■□□□ 1.09
CLCNKA-203ENST00000439316 IQGAP1P46940 1657 aa21.83■■□□□ 1.08
CLCNKA-203ENST00000439316 TMF1P82094 1093 aa21.83■■□□□ 1.08
CLCNKA-203ENST00000439316 ARHGAP31Q2M1Z3 1444 aa21.82■■□□□ 1.08
CLCNKA-203ENST00000439316 MLECQ14165 292 aa21.81■■□□□ 1.08
CLCNKA-203ENST00000439316 PANK3Q9H999 370 aa21.81■■□□□ 1.08
CLCNKA-203ENST00000439316 EXOC6Q8TAG9 804 aa21.81■■□□□ 1.08
CLCNKA-203ENST00000439316 BCL11AQ9H165 835 aa21.81■■□□□ 1.08
CLCNKA-203ENST00000439316 CC2D1BQ5T0F9 858 aaKnown RBP21.79■■□□□ 1.08
CLCNKA-203ENST00000439316 NOS1P29475 1434 aa21.79■■□□□ 1.08
CLCNKA-203ENST00000439316 NEURL4Q96JN8 1562 aa21.78■■□□□ 1.08
CLCNKA-203ENST00000439316 PPP6R1Q9UPN7 881 aa21.78■■□□□ 1.08
CLCNKA-203ENST00000439316 ANP32AP39687 249 aaKnown RBP21.77■■□□□ 1.08
CLCNKA-203ENST00000439316 SALL2Q9Y467 1007 aaPredicted RBP21.77■■□□□ 1.08
CLCNKA-203ENST00000439316 MROH2AA6NES4 1674 aa21.76■■□□□ 1.07
CLCNKA-203ENST00000439316 CLTCQ00610 1675 aaKnown RBP21.76■■□□□ 1.07
CLCNKA-203ENST00000439316 SYNMO15061 1565 aa21.76■■□□□ 1.07
CLCNKA-203ENST00000439316 PAK3O75914 559 aaPredicted RBP21.75■■□□□ 1.07
CLCNKA-203ENST00000439316 CDCA7LQ96GN5 454 aa21.75■■□□□ 1.07
CLCNKA-203ENST00000439316 IPO9Q96P70 1041 aaKnown RBP21.75■■□□□ 1.07
CLCNKA-203ENST00000439316 CHGAP10645 457 aaKnown RBP21.74■■□□□ 1.07
CLCNKA-203ENST00000439316 PREX1Q8TCU6 1659 aa21.74■■□□□ 1.07
CLCNKA-203ENST00000439316 PIK3C2BO00750 1634 aa21.72■■□□□ 1.07
CLCNKA-203ENST00000439316 ADGRB3O60242 1522 aa21.72■■□□□ 1.07
CLCNKA-203ENST00000439316 TCERG1O14776 1098 aaKnown RBP21.72■■□□□ 1.07
CLCNKA-203ENST00000439316 FBXO31Q5XUX0 539 aaPredicted RBP21.71■■□□□ 1.07
CLCNKA-203ENST00000439316 STAC3Q96MF2 364 aa21.71■■□□□ 1.07
CLCNKA-203ENST00000439316 SCAF11Q99590 1463 aaKnown RBP21.7■■□□□ 1.06
CLCNKA-203ENST00000439316 IFT172Q9UG01 1749 aa21.69■■□□□ 1.06
CLCNKA-203ENST00000439316 IDI1Q13907 227 aa21.68■■□□□ 1.06
CLCNKA-203ENST00000439316 MYOM1P52179 1685 aa21.68■■□□□ 1.06
CLCNKA-203ENST00000439316 ESF1Q9H501 851 aaKnown RBP21.67■■□□□ 1.06
CLCNKA-203ENST00000439316 ERVK-7P63135 1459 aa21.67■■□□□ 1.06
CLCNKA-203ENST00000439316 SLC52A1Q9NWF4 448 aa21.67■■□□□ 1.06
CLCNKA-203ENST00000439316 KIAA1210Q9ULL0 1709 aa21.66■■□□□ 1.06
CLCNKA-203ENST00000439316 MS4A1P11836 297 aa21.66■■□□□ 1.06
CLCNKA-203ENST00000439316 MYOM2P54296 1465 aa21.65■■□□□ 1.06
CLCNKA-203ENST00000439316 ASXL1Q8IXJ9 1541 aa21.64■■□□□ 1.06
CLCNKA-203ENST00000439316 ADGRF5Q8IZF2 1346 aa21.64■■□□□ 1.06
CLCNKA-203ENST00000439316 PPP2R1AP30153 589 aa21.64■■□□□ 1.05
CLCNKA-203ENST00000439316 AMER1Q5JTC6 1135 aaPredicted RBP21.64■■□□□ 1.05
CLCNKA-203ENST00000439316 PPLO60437 1756 aa21.64■■□□□ 1.05
CLCNKA-203ENST00000439316 CDCA8Q53HL2 280 aa21.63■■□□□ 1.05
CLCNKA-203ENST00000439316 ADAMTS8Q9UP79 889 aa21.63■■□□□ 1.05
CLCNKA-203ENST00000439316 KNSTRNQ9Y448 316 aa21.63■■□□□ 1.05
CLCNKA-203ENST00000439316 ZBTB47Q9UFB7 747 aaPredicted RBP21.63■■□□□ 1.05
CLCNKA-203ENST00000439316 PIK3C2GO75747 1445 aa21.63■■□□□ 1.05
CLCNKA-203ENST00000439316 ZMYM3Q14202 1370 aa21.62■■□□□ 1.05
CLCNKA-203ENST00000439316 MYO5BQ9ULV0 1848 aa21.62■■□□□ 1.05
CLCNKA-203ENST00000439316 NPC1L1Q9UHC9 1359 aa21.62■■□□□ 1.05
CLCNKA-203ENST00000439316 PLIN1O60240 522 aa21.61■■□□□ 1.05
CLCNKA-203ENST00000439316 PDE4AP27815 886 aa21.61■■□□□ 1.05
CLCNKA-203ENST00000439316 CRBNQ96SW2 442 aa21.61■■□□□ 1.05
CLCNKA-203ENST00000439316 SPATA31D1Q6ZQQ2 1576 aa21.6■■□□□ 1.05
CLCNKA-203ENST00000439316 RPGRIP1LQ68CZ1 1315 aa21.6■■□□□ 1.05
CLCNKA-203ENST00000439316 PLEKHH1Q9ULM0 1364 aa21.6■■□□□ 1.05
CLCNKA-203ENST00000439316 KDM5AP29375 1690 aaKnown RBP21.6■■□□□ 1.05
CLCNKA-203ENST00000439316 BACH2Q9BYV9 841 aa21.59■■□□□ 1.05
CLCNKA-203ENST00000439316 EIF3AQ14152 1382 aaKnown RBP21.59■■□□□ 1.05
CLCNKA-203ENST00000439316 NRXN1Q9ULB1 1477 aa21.59■■□□□ 1.05
CLCNKA-203ENST00000439316 TMEM131LA2VDJ0 1609 aa21.59■■□□□ 1.05
CLCNKA-203ENST00000439316 ZNF521Q96K83 1311 aa21.59■■□□□ 1.05
CLCNKA-203ENST00000439316 DEKP35659 375 aaKnown RBP21.58■■□□□ 1.05
CLCNKA-203ENST00000439316 WDR43Q15061 677 aaKnown RBP eCLIP21.57■■□□□ 1.04
CLCNKA-203ENST00000439316 CFAP70Q5T0N1 1121 aa21.57■■□□□ 1.04
CLCNKA-203ENST00000439316 NEXMIFQ5QGS0 1516 aa21.56■■□□□ 1.04
CLCNKA-203ENST00000439316 NBR1Q14596 966 aa21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms